Wall clock time and date at job start Fri Apr 10 2020 17:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 120.00018 * 2 1 4 4 C 1.52996 * 109.47141 * 125.00588 * 3 2 1 5 5 C 1.53005 * 109.47108 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47073 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99640 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99876 * 180.27176 * 6 5 4 9 9 C 1.46498 * 119.99899 * 179.72562 * 8 6 5 10 10 C 1.52997 * 109.47284 * 175.13140 * 9 8 6 11 11 N 1.46506 * 110.01187 * 303.90019 * 10 9 8 12 12 C 1.36935 * 120.00380 * 301.44830 * 11 10 9 13 13 H 1.08004 * 119.99665 * 354.22423 * 12 11 10 14 14 C 1.38803 * 120.00122 * 174.22334 * 12 11 10 15 15 N 1.31628 * 120.00222 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00283 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47629 * 89.99617 * 16 14 12 18 18 H 1.48503 * 109.47656 * 210.00154 * 16 14 12 19 19 H 1.48507 * 109.47233 * 329.99588 * 16 14 12 20 20 C 1.54261 * 110.03508 * 182.46094 * 10 9 8 21 21 C 1.54890 * 104.19527 * 217.10169 * 20 10 9 22 22 C 1.54883 * 102.74835 * 37.94447 * 21 20 10 23 23 C 1.53868 * 110.03469 * 65.28943 * 10 9 8 24 24 H 1.07988 * 120.00063 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99783 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99829 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47341 * 4.99786 * 3 2 1 28 28 H 1.09004 * 109.46857 * 245.00287 * 3 2 1 29 29 H 1.08993 * 109.47752 * 59.99622 * 4 3 2 30 30 H 1.09004 * 109.46999 * 299.99612 * 4 3 2 31 31 H 1.08994 * 109.47162 * 59.99785 * 5 4 3 32 32 H 1.08996 * 109.47041 * 299.99409 * 5 4 3 33 33 H 0.96995 * 120.00104 * 359.72745 * 8 6 5 34 34 H 1.09005 * 109.47117 * 295.13274 * 9 8 6 35 35 H 1.08999 * 109.47504 * 55.12794 * 9 8 6 36 36 H 0.96998 * 119.99737 * 121.45320 * 11 10 9 37 37 H 0.96996 * 120.00072 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.48670 * 335.77973 * 20 10 9 39 39 H 1.09006 * 110.48663 * 98.42185 * 20 10 9 40 40 H 1.08991 * 110.75793 * 279.62439 * 21 20 10 41 41 H 1.09002 * 110.75017 * 156.25702 * 21 20 10 42 42 H 1.09001 * 110.48585 * 203.37723 * 22 21 20 43 43 H 1.09000 * 110.48886 * 80.73401 * 22 21 20 44 44 H 1.09005 * 110.03736 * 238.57312 * 23 10 9 45 45 H 1.09005 * 110.03554 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3330 1.1815 5 6 3.7997 2.6583 1.1819 6 6 4.7564 2.6861 2.3461 7 8 4.8199 1.7393 3.1013 8 7 5.5369 3.7655 2.5513 9 6 6.4624 3.7949 3.6865 10 6 7.3088 5.0678 3.6216 11 7 8.0041 5.1425 2.3342 12 6 8.8566 4.1394 1.9572 13 1 9.0888 3.3407 2.6461 14 6 9.4223 4.1490 0.6897 15 7 10.2413 3.1845 0.3271 16 14 9.0213 5.5308 -0.5016 17 1 9.9998 6.6342 -0.3275 18 1 9.0934 5.0204 -1.8943 19 1 7.6516 6.0365 -0.2303 20 6 8.3309 5.0824 4.7769 21 6 8.3972 6.5690 5.2067 22 6 6.9243 7.0293 5.0737 23 6 6.4145 6.3057 3.8101 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9315 29 1 3.7401 0.5065 1.0920 30 1 2.4774 1.2355 2.1130 31 1 3.0946 3.4845 1.2717 32 1 4.3575 2.7562 0.2505 33 1 5.4857 4.5228 1.9475 34 1 5.8959 3.7824 4.6176 35 1 7.1146 2.9225 3.6463 36 1 7.8607 5.9026 1.7489 37 1 10.6369 3.1915 -0.5585 38 1 7.9823 4.4618 5.6025 39 1 9.3059 4.7423 4.4280 40 1 9.0415 7.1368 4.5355 41 1 8.7381 6.6580 6.2382 42 1 6.8728 8.1100 4.9413 43 1 6.3486 6.7231 5.9471 44 1 6.4984 6.9625 2.9442 45 1 5.3775 5.9996 3.9484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482227847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:40 Heat of formation + Delta-G solvation = -30.972292 kcal Electronic energy + Delta-G solvation = -22430.314661 eV Core-core repulsion = 19254.448965 eV Total energy + Delta-G solvation = -3175.865696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.51167 -38.28687 -35.99197 -34.10480 -33.32139 -32.33352 -30.96452 -28.58482 -28.35775 -26.98072 -24.34621 -22.94820 -21.86390 -20.47392 -19.98940 -19.55921 -18.57062 -17.57914 -16.71965 -15.86921 -15.68330 -15.21648 -14.90077 -14.67271 -14.34014 -13.98706 -13.58701 -13.38949 -13.05656 -12.80368 -12.72234 -12.46237 -12.02858 -11.83194 -11.65366 -11.46004 -11.27645 -10.96305 -10.86477 -10.82132 -10.67969 -10.65472 -10.46811 -10.38573 -10.23892 -9.99626 -9.56798 -9.48181 -9.33533 -8.93406 -8.41135 -7.32804 -5.79625 -3.16790 2.16381 3.14405 3.29353 3.33278 3.40633 3.74529 4.53772 4.71796 4.92195 4.96728 5.00265 5.05402 5.11415 5.19673 5.29463 5.39811 5.50189 5.51618 5.60818 5.69771 5.73793 5.76892 5.83399 5.85885 5.87672 5.98479 6.08747 6.18016 6.19434 6.20590 6.35925 6.37522 6.47271 6.49227 6.51991 6.66157 6.69386 6.75629 6.95432 7.08822 7.96619 8.07569 8.38937 8.75778 9.16104 9.87807 10.06636 11.38442 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.004762 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.971835 B = 5878.921903 C = 7117.180178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.097 4.097 4 C -0.097 4.097 5 C -0.142 4.142 6 C 0.509 3.491 7 O -0.555 6.555 8 N -0.705 5.705 9 C 0.121 3.879 10 C 0.195 3.805 11 N -0.737 5.737 12 C -0.238 4.238 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.881 3.119 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.278 1.278 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.128 4.128 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.067 3.938 3.412 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.163 4.163 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.182 4.182 6 C 0.295 3.705 7 O -0.434 6.434 8 N -0.354 5.354 9 C -0.005 4.005 10 C 0.103 3.897 11 N -0.380 5.380 12 C -0.367 4.367 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.578 5.578 16 Si 0.712 3.288 17 H -0.213 1.213 18 H -0.220 1.220 19 H -0.204 1.204 20 C -0.171 4.171 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.167 4.167 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.194 0.806 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.869 3.052 3.923 15.677 hybrid contribution -0.072 1.285 -1.387 1.892 sum -14.941 4.336 2.535 15.763 Atomic orbital electron populations 1.23807 0.95964 1.01606 1.02677 1.23016 0.96000 0.98799 0.98522 1.20828 0.98217 0.95203 0.99191 1.21249 0.97542 0.96711 0.98038 1.21678 0.98257 0.99994 0.98265 1.20541 0.81354 0.82363 0.86212 1.90655 1.69267 1.35441 1.47997 1.45744 1.39945 1.19142 1.30582 1.21829 0.91122 1.00599 0.86970 1.20422 0.90384 0.91364 0.87522 1.42901 1.52759 1.24716 1.17579 1.18936 1.17682 1.02123 0.98003 0.89140 1.24658 0.99609 0.97524 0.97018 1.69701 1.34664 1.33125 1.20332 0.86630 0.77872 0.82702 0.81646 1.21262 1.21952 1.20428 1.22803 1.01548 0.95483 0.97269 1.22405 0.95937 0.97115 1.00137 1.22312 0.96862 0.99160 0.97530 1.22471 0.99040 0.96965 0.98182 0.88738 0.88753 0.87334 0.91607 0.90796 0.90940 0.91306 0.89501 0.88883 0.76847 0.93084 0.91019 0.80622 0.93108 0.92587 0.89807 0.91524 0.92481 0.92351 0.92061 0.91718 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 14.32 29.01 0.42 -1.43 16 2 C -0.15 -1.47 9.52 -36.03 -0.34 -1.81 16 3 C -0.10 -0.99 5.66 -27.89 -0.16 -1.15 16 4 C -0.10 -1.23 4.49 -26.73 -0.12 -1.35 16 5 C -0.14 -1.85 5.70 -27.88 -0.16 -2.00 16 6 C 0.51 8.87 7.83 -10.98 -0.09 8.78 16 7 O -0.55 -11.67 15.98 5.56 0.09 -11.58 16 8 N -0.70 -12.03 5.10 -60.29 -0.31 -12.33 16 9 C 0.12 2.20 3.99 -4.04 -0.02 2.18 16 10 C 0.19 3.38 0.68 -130.71 -0.09 3.29 16 11 N -0.74 -15.56 4.55 -46.20 -0.21 -15.77 16 12 C -0.24 -6.21 8.87 -15.06 -0.13 -6.34 16 13 H 0.09 2.62 7.46 -52.48 -0.39 2.23 16 14 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 15 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 16 Si 0.88 21.00 27.68 -169.99 -4.71 16.29 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.05 6.61 56.52 0.37 -5.67 16 20 C -0.13 -2.20 5.94 -25.07 -0.15 -2.35 16 21 C -0.12 -1.68 6.91 -24.74 -0.17 -1.85 16 22 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 23 C -0.13 -1.81 5.80 -25.61 -0.15 -1.96 16 24 H 0.09 0.75 8.06 -52.49 -0.42 0.33 16 25 H 0.09 0.78 7.84 -52.49 -0.41 0.37 16 26 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 30 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.40 6.24 7.99 -40.82 -0.33 5.91 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.57 7.50 -51.93 -0.39 1.18 16 36 H 0.36 7.51 5.20 -40.82 -0.21 7.30 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 39 H 0.08 1.66 7.11 -51.93 -0.37 1.29 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.91 7.44 -51.93 -0.39 0.53 16 45 H 0.06 0.84 7.55 -51.93 -0.39 0.44 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -31.28 359.63 -8.29 -39.57 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -7.92 Total: 13.67 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.42 Total: -7.56 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.26 Total: -55.81 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.28 -8.29 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482227847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.596 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds