Wall clock time and date at job start Fri Apr 10 2020 17:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46920 * 2 1 4 4 C 1.50694 * 120.00231 * 87.56775 * 3 2 1 5 5 C 1.32997 * 119.99735 * 267.56870 * 3 2 1 6 6 C 1.47098 * 120.00128 * 7.57850 * 5 3 2 7 7 O 1.21615 * 119.99937 * 6.27920 * 6 5 3 8 8 N 1.34781 * 120.00187 * 186.27325 * 6 5 3 9 9 C 1.46496 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.01815 * 33.61045 * 9 8 6 11 11 C 1.54262 * 110.03075 * 272.16644 * 9 8 6 12 12 C 1.54888 * 104.19676 * 264.32566 * 11 9 8 13 13 C 1.54964 * 102.77981 * 322.08502 * 12 11 9 14 14 C 1.53876 * 110.02992 * 155.00301 * 9 8 6 15 15 H 1.09001 * 110.03773 * 359.94663 * 14 9 8 16 16 C 1.53002 * 110.02829 * 238.56897 * 14 9 8 17 17 N 1.46506 * 109.47146 * 175.69354 * 16 14 9 18 18 C 1.36935 * 119.99976 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00038 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99699 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99763 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46966 * 269.99366 * 22 20 18 24 24 H 1.48497 * 109.47496 * 29.99666 * 22 20 18 25 25 H 1.48498 * 109.47145 * 149.99980 * 22 20 18 26 26 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47165 * 299.99911 * 1 2 3 28 28 H 1.09001 * 109.47208 * 60.00163 * 1 2 3 29 29 H 1.08997 * 109.47165 * 240.00089 * 2 1 3 30 30 H 1.09001 * 109.47208 * 119.99836 * 2 1 3 31 31 H 1.09007 * 109.46844 * 270.00063 * 4 3 2 32 32 H 1.09000 * 109.47099 * 29.99599 * 4 3 2 33 33 H 1.08997 * 109.47437 * 150.00165 * 4 3 2 34 34 H 1.07997 * 119.99779 * 187.58868 * 5 3 2 35 35 H 0.97002 * 119.99736 * 0.02562 * 8 6 5 36 36 H 1.08993 * 110.49176 * 23.00211 * 11 9 8 37 37 H 1.08998 * 110.48875 * 145.51867 * 11 9 8 38 38 H 1.09004 * 110.75708 * 80.37160 * 12 11 9 39 39 H 1.08998 * 110.75653 * 203.74482 * 12 11 9 40 40 H 1.09007 * 110.47952 * 279.23638 * 13 12 11 41 41 H 1.09000 * 110.53457 * 156.56310 * 13 12 11 42 42 H 1.08997 * 109.47421 * 55.68891 * 16 14 9 43 43 H 1.08997 * 109.47049 * 295.68834 * 16 14 9 44 44 H 0.96995 * 119.99515 * 359.97438 * 17 16 14 45 45 H 0.97000 * 120.00123 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2312 2.1497 1.3038 5 6 2.3000 2.0315 -1.1508 6 6 1.9505 1.3851 -2.4251 7 8 1.3157 0.3478 -2.4268 8 7 2.3338 1.9425 -3.5909 9 6 1.9853 1.2990 -4.8600 10 1 1.0161 0.8075 -4.7753 11 6 3.0685 0.2708 -5.2461 12 6 4.0032 1.0465 -6.2072 13 6 3.0122 1.9162 -7.0214 14 6 1.9494 2.3445 -5.9885 15 1 2.1904 3.3307 -5.5918 16 6 0.5648 2.3658 -6.6392 17 7 0.5123 3.4338 -7.6408 18 6 -0.6357 3.6451 -8.3567 19 1 -1.5022 3.0242 -8.1834 20 6 -0.6856 4.6574 -9.3053 21 7 0.3703 5.4143 -9.5161 22 14 -2.2518 4.9461 -10.2815 23 1 -2.2214 4.1269 -11.5198 24 1 -3.4261 4.5578 -9.4597 25 1 -2.3529 6.3833 -10.6414 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3111 2.6677 1.5746 32 1 2.4885 1.4340 2.0846 33 1 3.0379 2.8748 1.1954 34 1 2.7741 3.0018 -1.1496 35 1 2.8404 2.7697 -3.5895 36 1 3.6165 -0.0561 -4.3624 37 1 2.6202 -0.5833 -5.7535 38 1 4.6975 1.6739 -5.6482 39 1 4.5414 0.3597 -6.8605 40 1 2.5551 1.3291 -7.8181 41 1 3.5185 2.7896 -7.4323 42 1 -0.1925 2.5456 -5.8762 43 1 0.3749 1.4066 -7.1207 44 1 1.2904 3.9916 -7.7961 45 1 1.1835 5.2646 -9.0089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482679369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:53 Heat of formation + Delta-G solvation = -30.531379 kcal Electronic energy + Delta-G solvation = -22176.770384 eV Core-core repulsion = 19000.923808 eV Total energy + Delta-G solvation = -3175.846577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18488 -38.37130 -36.00395 -34.70461 -33.46436 -31.39679 -30.98937 -28.81797 -28.32963 -27.14383 -24.28363 -23.71425 -22.43096 -21.52933 -20.07410 -19.95706 -18.51177 -17.27218 -16.96223 -16.24393 -15.36312 -15.04218 -14.81715 -14.58967 -14.19376 -13.82085 -13.69250 -13.67456 -13.23025 -13.08888 -13.01622 -12.90960 -12.54976 -12.12591 -12.05246 -11.56969 -11.33070 -11.10400 -10.90209 -10.86174 -10.75879 -10.69308 -10.51269 -10.45439 -10.26013 -9.99602 -9.45186 -9.31168 -9.15834 -8.85817 -8.80418 -6.97390 -6.08562 -3.07468 1.24907 3.28706 3.29797 3.53459 3.58407 3.72330 4.55011 4.56731 4.62838 4.75516 4.80057 5.00776 5.04974 5.19863 5.21600 5.27819 5.42884 5.45858 5.52123 5.56439 5.56857 5.61405 5.67432 5.77067 5.81904 5.84135 5.86491 6.00555 6.04972 6.08722 6.14419 6.22447 6.23741 6.34129 6.42799 6.48746 6.54553 6.64732 6.73208 6.87762 7.61352 7.84282 8.32970 8.78273 9.25774 10.12111 10.27515 11.40346 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.003467 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.449939 B = 8073.497240 C = 8745.158445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.031 4.031 4 C -0.126 4.126 5 C -0.232 4.232 6 C 0.543 3.457 7 O -0.538 6.538 8 N -0.717 5.717 9 C 0.147 3.853 10 H 0.092 0.908 11 C -0.129 4.129 12 C -0.125 4.125 13 C -0.113 4.113 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.167 3.833 17 N -0.742 5.742 18 C -0.330 4.330 19 H 0.064 0.936 20 C -0.046 4.046 21 N -0.946 5.946 22 Si 1.083 2.917 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.288 1.288 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.398 0.602 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.018 0.982 43 H 0.022 0.978 44 H 0.367 0.633 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.156 -8.820 19.413 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C -0.033 4.033 4 C -0.183 4.183 5 C -0.252 4.252 6 C 0.332 3.668 7 O -0.418 6.418 8 N -0.367 5.367 9 C 0.042 3.958 10 H 0.110 0.890 11 C -0.168 4.168 12 C -0.162 4.162 13 C -0.151 4.151 14 C -0.124 4.124 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.388 5.388 18 C -0.461 4.461 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.592 5.592 22 Si 0.914 3.086 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.214 1.214 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.040 0.960 44 H 0.200 0.800 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.772 -8.753 18.251 21.344 hybrid contribution 1.220 -0.210 1.150 1.690 sum 7.992 -8.963 19.401 22.817 Atomic orbital electron populations 1.21525 0.94201 1.01654 1.01497 1.21036 0.97199 0.92489 1.03472 1.22549 0.90575 0.95795 0.94395 1.21000 1.02634 1.00172 0.94465 1.22411 1.08555 1.02108 0.92176 1.18553 0.79401 0.84476 0.84324 1.90711 1.40167 1.23527 1.87355 1.46113 1.57105 1.27799 1.05654 1.21607 0.99011 0.93142 0.82010 0.88954 1.22725 0.96902 0.97902 0.99223 1.22544 0.97463 0.98440 0.97789 1.22390 0.95517 0.99587 0.97564 1.22242 0.97504 0.98026 0.94594 0.90660 1.20663 0.92081 0.92225 0.91076 1.42338 1.14271 1.37666 1.44496 1.20080 0.91997 1.16376 1.17629 0.91783 1.25766 1.04657 0.94985 0.98960 1.70851 1.03050 1.41220 1.44046 0.83193 0.73764 0.76172 0.75499 1.22322 1.22165 1.21401 0.92773 0.93858 0.91684 0.87784 0.92422 0.90259 0.91233 0.91237 0.85830 0.76779 0.91717 0.90871 0.91968 0.91746 0.90822 0.91543 0.96389 0.95974 0.80037 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.45 37.16 0.35 -1.08 16 2 C -0.11 -1.11 5.33 -27.88 -0.15 -1.26 16 3 C -0.03 -0.30 5.36 -101.17 -0.54 -0.84 16 4 C -0.13 -0.85 10.05 36.00 0.36 -0.48 16 5 C -0.23 -2.42 9.63 -37.81 -0.36 -2.79 16 6 C 0.54 7.17 7.60 -12.66 -0.10 7.08 16 7 O -0.54 -8.48 11.32 5.26 0.06 -8.42 16 8 N -0.72 -8.92 5.03 -53.90 -0.27 -9.19 16 9 C 0.15 2.09 2.90 -66.82 -0.19 1.90 16 10 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16 11 C -0.13 -1.64 6.54 -25.07 -0.16 -1.80 16 12 C -0.12 -1.51 6.91 -24.70 -0.17 -1.68 16 13 C -0.11 -1.70 6.05 -25.03 -0.15 -1.85 16 14 C -0.10 -1.67 2.73 -89.50 -0.24 -1.91 16 15 H 0.08 1.20 7.62 -51.93 -0.40 0.81 16 16 C 0.17 3.49 5.31 -4.04 -0.02 3.46 16 17 N -0.74 -18.99 5.44 -59.91 -0.33 -19.31 16 18 C -0.33 -9.54 9.99 -15.06 -0.15 -9.70 16 19 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 21 N -0.95 -29.52 13.70 55.49 0.76 -28.76 16 22 Si 1.08 26.43 29.92 -169.99 -5.09 21.35 16 23 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.86 6.91 -51.93 -0.36 0.51 16 29 H 0.10 1.34 5.57 -51.93 -0.29 1.05 16 30 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.07 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 35 H 0.40 4.13 8.30 -40.82 -0.34 3.80 16 36 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.23 7.77 -51.93 -0.40 0.83 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.48 8.02 -51.93 -0.42 0.06 16 44 H 0.37 9.46 6.36 -40.82 -0.26 9.20 16 45 H 0.25 7.78 6.77 -40.82 -0.28 7.50 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -32.96 357.72 -8.89 -41.85 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.79 Total: 9.52 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -1.63 Total: -12.42 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.16 Total: -57.27 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.06 Total: -8.42 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -5.09 Total: 21.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.96 -8.89 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482679369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.317 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds