Wall clock time and date at job start Fri Apr 10 2020 17:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46920 * 2 1 4 4 C 1.50694 * 120.00231 * 87.56775 * 3 2 1 5 5 C 1.32997 * 119.99735 * 267.56870 * 3 2 1 6 6 C 1.47098 * 120.00128 * 7.57850 * 5 3 2 7 7 O 1.21615 * 119.99937 * 6.27920 * 6 5 3 8 8 N 1.34781 * 120.00187 * 186.27325 * 6 5 3 9 9 C 1.46496 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.01815 * 33.61045 * 9 8 6 11 11 C 1.54262 * 110.03075 * 272.16644 * 9 8 6 12 12 C 1.54888 * 104.19676 * 264.32566 * 11 9 8 13 13 C 1.54964 * 102.77981 * 322.08502 * 12 11 9 14 14 C 1.53876 * 110.02992 * 155.00301 * 9 8 6 15 15 H 1.09001 * 110.03773 * 359.94663 * 14 9 8 16 16 C 1.53002 * 110.02829 * 238.56897 * 14 9 8 17 17 N 1.46506 * 109.47146 * 175.69354 * 16 14 9 18 18 C 1.36935 * 119.99976 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00038 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99699 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99763 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46966 * 269.99366 * 22 20 18 24 24 H 1.48497 * 109.47496 * 29.99666 * 22 20 18 25 25 H 1.48498 * 109.47145 * 149.99980 * 22 20 18 26 26 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47165 * 299.99911 * 1 2 3 28 28 H 1.09001 * 109.47208 * 60.00163 * 1 2 3 29 29 H 1.08997 * 109.47165 * 240.00089 * 2 1 3 30 30 H 1.09001 * 109.47208 * 119.99836 * 2 1 3 31 31 H 1.09007 * 109.46844 * 270.00063 * 4 3 2 32 32 H 1.09000 * 109.47099 * 29.99599 * 4 3 2 33 33 H 1.08997 * 109.47437 * 150.00165 * 4 3 2 34 34 H 1.07997 * 119.99779 * 187.58868 * 5 3 2 35 35 H 0.97002 * 119.99736 * 0.02562 * 8 6 5 36 36 H 1.08993 * 110.49176 * 23.00211 * 11 9 8 37 37 H 1.08998 * 110.48875 * 145.51867 * 11 9 8 38 38 H 1.09004 * 110.75708 * 80.37160 * 12 11 9 39 39 H 1.08998 * 110.75653 * 203.74482 * 12 11 9 40 40 H 1.09007 * 110.47952 * 279.23638 * 13 12 11 41 41 H 1.09000 * 110.53457 * 156.56310 * 13 12 11 42 42 H 1.08997 * 109.47421 * 55.68891 * 16 14 9 43 43 H 1.08997 * 109.47049 * 295.68834 * 16 14 9 44 44 H 0.96995 * 119.99515 * 359.97438 * 17 16 14 45 45 H 0.97000 * 120.00123 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2312 2.1497 1.3038 5 6 2.3000 2.0315 -1.1508 6 6 1.9505 1.3851 -2.4251 7 8 1.3157 0.3478 -2.4268 8 7 2.3338 1.9425 -3.5909 9 6 1.9853 1.2990 -4.8600 10 1 1.0161 0.8075 -4.7753 11 6 3.0685 0.2708 -5.2461 12 6 4.0032 1.0465 -6.2072 13 6 3.0122 1.9162 -7.0214 14 6 1.9494 2.3445 -5.9885 15 1 2.1904 3.3307 -5.5918 16 6 0.5648 2.3658 -6.6392 17 7 0.5123 3.4338 -7.6408 18 6 -0.6357 3.6451 -8.3567 19 1 -1.5022 3.0242 -8.1834 20 6 -0.6856 4.6574 -9.3053 21 7 0.3703 5.4143 -9.5161 22 14 -2.2518 4.9461 -10.2815 23 1 -2.2214 4.1269 -11.5198 24 1 -3.4261 4.5578 -9.4597 25 1 -2.3529 6.3833 -10.6414 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3111 2.6677 1.5746 32 1 2.4885 1.4340 2.0846 33 1 3.0379 2.8748 1.1954 34 1 2.7741 3.0018 -1.1496 35 1 2.8404 2.7697 -3.5895 36 1 3.6165 -0.0561 -4.3624 37 1 2.6202 -0.5833 -5.7535 38 1 4.6975 1.6739 -5.6482 39 1 4.5414 0.3597 -6.8605 40 1 2.5551 1.3291 -7.8181 41 1 3.5185 2.7896 -7.4323 42 1 -0.1925 2.5456 -5.8762 43 1 0.3749 1.4066 -7.1207 44 1 1.2904 3.9916 -7.7961 45 1 1.1835 5.2646 -9.0089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482679369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:53 Heat of formation + Delta-G solvation = -51.021330 kcal Electronic energy + Delta-G solvation = -22177.658895 eV Core-core repulsion = 19000.923808 eV Total energy + Delta-G solvation = -3176.735087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25427 -39.55369 -37.01404 -36.48715 -34.62489 -33.28600 -31.81351 -30.08207 -29.60051 -28.10001 -26.09657 -24.74986 -24.15632 -22.56792 -21.32008 -21.06651 -19.68094 -19.16064 -17.99312 -17.42957 -16.86558 -16.19013 -15.86600 -15.79224 -15.69421 -15.39800 -15.02204 -14.89794 -14.63338 -14.37248 -13.76146 -13.72270 -13.54587 -13.15349 -12.90553 -12.82461 -12.71710 -12.59315 -12.53292 -12.02612 -11.95684 -11.90031 -11.85236 -11.82133 -11.74453 -11.58023 -11.27898 -10.96453 -10.45249 -10.18248 -9.80865 -9.14943 -8.43776 -5.37282 0.42845 1.56651 1.67287 1.82062 2.27919 2.33209 2.68555 3.35009 3.38590 3.60183 3.77552 3.82850 3.86099 3.98103 4.23634 4.29729 4.37975 4.43060 4.47333 4.52351 4.53949 4.57786 4.65782 4.69251 4.71038 4.82691 4.89340 4.91303 4.96180 5.02863 5.08058 5.09681 5.17562 5.24192 5.28394 5.36178 5.40530 5.52351 5.54607 5.67245 5.71100 6.47376 6.64774 7.06127 7.33922 7.96145 8.07770 9.08631 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.003467 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.449939 B = 8073.497240 C = 8745.158445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.024 4.024 4 C -0.124 4.124 5 C -0.246 4.246 6 C 0.534 3.466 7 O -0.570 6.570 8 N -0.711 5.711 9 C 0.155 3.845 10 H 0.066 0.934 11 C -0.122 4.122 12 C -0.110 4.110 13 C -0.112 4.112 14 C -0.091 4.091 15 H 0.079 0.921 16 C 0.168 3.832 17 N -0.751 5.751 18 C -0.340 4.340 19 H 0.060 0.940 20 C -0.100 4.100 21 N -0.971 5.971 22 Si 1.130 2.870 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.289 1.289 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.410 0.590 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.005 0.995 43 H 0.016 0.984 44 H 0.364 0.636 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.993 -8.772 21.034 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C -0.026 4.026 4 C -0.180 4.180 5 C -0.267 4.267 6 C 0.326 3.674 7 O -0.452 6.452 8 N -0.362 5.362 9 C 0.049 3.951 10 H 0.084 0.916 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.149 4.149 14 C -0.111 4.111 15 H 0.097 0.903 16 C 0.041 3.959 17 N -0.396 5.396 18 C -0.472 4.472 19 H 0.078 0.922 20 C -0.292 4.292 21 N -0.619 5.619 22 Si 0.955 3.045 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.215 1.215 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.023 0.977 43 H 0.034 0.966 44 H 0.196 0.804 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.633 -8.720 19.903 23.031 hybrid contribution 0.924 -0.295 0.716 1.206 sum 8.557 -9.015 20.619 24.076 Atomic orbital electron populations 1.21473 0.94666 1.01558 1.00826 1.21009 0.96790 0.93432 1.03244 1.22849 0.88823 0.95233 0.95652 1.21061 1.03538 1.00548 0.92851 1.22485 1.10099 1.03263 0.90840 1.19110 0.78820 0.84185 0.85273 1.90710 1.41614 1.25053 1.87846 1.46007 1.57122 1.28199 1.04875 1.21337 0.98593 0.92819 0.82303 0.91624 1.22660 0.96423 0.97337 0.99627 1.22476 0.96755 0.98143 0.97319 1.22332 0.95811 0.99748 0.97057 1.22076 0.94786 0.98966 0.95247 0.90289 1.20749 0.94925 0.90380 0.89828 1.42477 1.13358 1.38632 1.45099 1.20405 0.92888 1.16095 1.17778 0.92155 1.27219 1.06867 0.94893 1.00182 1.70958 1.03514 1.42473 1.44970 0.82592 0.70992 0.76056 0.74891 1.20956 1.20187 1.21538 0.92697 0.91998 0.94683 0.90380 0.90239 0.89490 0.89850 0.89780 0.83347 0.75378 0.90978 0.91161 0.90117 0.90224 0.92853 0.91860 0.97710 0.96633 0.80372 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.45 71.98 0.68 -2.05 16 2 C -0.11 -2.16 5.33 29.85 0.16 -2.00 16 3 C -0.02 -0.41 5.36 -17.62 -0.09 -0.50 16 4 C -0.12 -1.26 10.05 71.23 0.72 -0.54 16 5 C -0.25 -4.77 9.63 23.43 0.23 -4.54 16 6 C 0.53 14.00 7.60 86.57 0.66 14.66 16 7 O -0.57 -18.46 11.32 -4.08 -0.05 -18.50 16 8 N -0.71 -17.27 5.03 -442.71 -2.22 -19.50 16 9 C 0.16 4.42 2.90 45.72 0.13 4.56 16 10 H 0.07 2.24 7.09 -2.39 -0.02 2.23 16 11 C -0.12 -2.98 6.54 31.67 0.21 -2.77 16 12 C -0.11 -2.45 6.91 31.91 0.22 -2.22 16 13 C -0.11 -3.32 6.05 31.70 0.19 -3.13 16 14 C -0.09 -2.94 2.73 -10.07 -0.03 -2.97 16 15 H 0.08 2.49 7.62 -2.39 -0.02 2.48 16 16 C 0.17 7.21 5.31 86.38 0.46 7.67 16 17 N -0.75 -39.28 5.44 -343.44 -1.87 -41.15 16 18 C -0.34 -19.96 9.99 84.03 0.84 -19.12 16 19 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 20 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 21 N -0.97 -61.24 13.70 21.65 0.30 -60.95 16 22 Si 1.13 53.08 29.92 68.60 2.05 55.13 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.03 0.95 6.91 -2.39 -0.02 0.93 16 29 H 0.08 2.02 5.57 -2.39 -0.01 2.01 16 30 H 0.08 1.22 8.06 -2.39 -0.02 1.20 16 31 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.08 0.65 8.06 -2.39 -0.02 0.63 16 33 H 0.08 0.65 8.06 -2.39 -0.02 0.63 16 34 H 0.15 2.05 8.04 -2.91 -0.02 2.03 16 35 H 0.41 7.93 8.30 -92.71 -0.77 7.16 16 36 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.80 7.77 -2.38 -0.02 1.78 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.02 0.70 8.02 -2.39 -0.02 0.68 16 44 H 0.36 19.23 6.36 -92.71 -0.59 18.64 16 45 H 0.25 15.33 6.77 -92.71 -0.63 14.70 16 Total: -1.00 -72.16 357.72 2.80 -69.36 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.25 Total: 34.05 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.83 Total: -18.44 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -3.80 Total: -121.59 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.05 Total: 55.13 kcal Total: -72.16 2.80 -69.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482679369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.338 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds