Wall clock time and date at job start Fri Apr 10 2020 17:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47382 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99930 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00051 * 180.02562 * 5 4 3 8 8 C 1.47615 * 126.91926 * 0.02562 * 7 5 4 9 9 C 1.54357 * 107.04828 * 154.97777 * 8 7 5 10 10 C 1.53082 * 104.62604 * 2.22351 * 9 8 7 11 11 C 1.53643 * 111.78907 * 141.29102 * 10 9 8 12 12 C 1.55183 * 101.41763 * 155.66467 * 11 10 9 13 13 N 1.47567 * 105.00770 * 324.51649 * 12 11 10 14 14 C 1.36939 * 125.67588 * 203.83828 * 13 12 11 15 15 H 1.08002 * 119.99927 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00180 * 0.03054 * 14 13 12 17 17 N 1.31624 * 119.99852 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47398 * 59.99960 * 18 16 14 20 20 H 1.48503 * 109.47115 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47549 * 299.99959 * 18 16 14 22 22 C 1.47411 * 108.64629 * 23.86419 * 13 12 11 23 23 C 1.48408 * 126.91825 * 179.97438 * 7 5 4 24 24 H 1.08998 * 109.47102 * 300.00398 * 1 2 3 25 25 H 1.09003 * 109.46632 * 59.99935 * 1 2 3 26 26 H 1.08994 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47102 * 239.99602 * 2 1 3 28 28 H 1.09003 * 109.46632 * 120.00065 * 2 1 3 29 29 H 1.08998 * 109.47470 * 59.99827 * 3 2 1 30 30 H 1.09003 * 109.47432 * 299.99574 * 3 2 1 31 31 H 1.08998 * 109.47102 * 59.99602 * 4 3 2 32 32 H 1.09003 * 109.46632 * 300.00065 * 4 3 2 33 33 H 1.08998 * 109.91935 * 35.63080 * 8 7 5 34 34 H 1.08996 * 109.91829 * 274.32506 * 8 7 5 35 35 H 1.08998 * 110.40041 * 121.01559 * 9 8 7 36 36 H 1.08997 * 110.40294 * 243.31942 * 9 8 7 37 37 H 1.09003 * 111.03184 * 273.69609 * 11 10 9 38 38 H 1.08998 * 111.03432 * 37.62550 * 11 10 9 39 39 H 1.09005 * 110.33087 * 205.63951 * 12 11 10 40 40 H 1.08994 * 110.42515 * 83.44805 * 12 11 10 41 41 H 0.97000 * 119.99907 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.98672 * 238.52466 * 22 13 12 43 43 H 1.09005 * 110.01773 * 117.24071 * 22 13 12 44 44 H 1.09002 * 110.68790 * 99.19141 * 23 7 5 45 45 H 1.09006 * 110.68628 * 336.01467 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3975 3.1094 0.0014 8 6 6.4849 2.1111 0.0004 9 6 7.7225 2.7907 -0.6233 10 6 7.2724 4.2255 -0.9097 11 6 8.3860 5.2422 -0.6147 12 6 7.9733 6.4244 -1.5313 13 7 7.4046 5.7924 -2.7374 14 6 7.3295 6.3649 -3.9791 15 1 6.8926 5.8169 -4.8009 16 6 7.8148 7.6495 -4.1816 17 7 8.3469 8.3175 -3.1800 18 14 7.7129 8.4302 -5.8755 19 1 6.2916 8.5130 -6.2978 20 1 8.2947 9.7956 -5.8271 21 1 8.4708 7.6029 -6.8484 22 6 6.9304 4.4424 -2.3830 23 6 6.0572 4.4388 0.0015 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8891 32 1 3.9329 0.9287 0.8909 33 1 6.1951 1.2469 -0.5973 34 1 6.7062 1.8022 1.0220 35 1 8.5539 2.7866 0.0817 36 1 8.0067 2.2879 -1.5477 37 1 8.3770 5.5387 0.4342 38 1 9.3613 4.8479 -0.8998 39 1 8.8458 7.0232 -1.7930 40 1 7.2236 7.0438 -1.0390 41 1 8.6857 9.2153 -3.3215 42 1 7.4362 3.6968 -2.9966 43 1 5.8522 4.3754 -2.5290 44 1 6.3742 4.7114 1.0081 45 1 5.3938 5.1979 -0.4131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483839049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:59 Heat of formation + Delta-G solvation = -23.965577 kcal Electronic energy + Delta-G solvation = -22637.176834 eV Core-core repulsion = 19461.614972 eV Total energy + Delta-G solvation = -3175.561862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.22146 -38.44729 -35.72025 -35.35751 -32.70708 -30.94969 -30.27825 -29.24698 -27.97770 -26.03638 -24.76643 -23.52282 -22.28678 -21.21424 -20.29029 -19.11728 -18.63663 -16.98053 -16.64484 -16.17162 -15.36741 -15.18972 -14.80246 -14.42482 -14.01944 -13.94838 -13.69334 -13.48274 -12.82859 -12.78860 -12.54560 -12.27022 -11.99443 -11.75393 -11.51695 -11.50400 -11.39191 -11.37192 -11.19669 -11.14049 -10.87600 -10.75831 -10.73555 -10.20595 -10.02051 -9.89630 -9.79422 -9.65600 -9.44566 -8.61297 -8.51094 -6.79555 -5.61891 -3.02973 2.78482 3.09081 3.43144 3.47248 3.48588 4.45401 4.51488 4.70578 4.72719 4.77044 4.89016 4.99218 5.10279 5.15591 5.28450 5.32869 5.39653 5.48411 5.53130 5.57436 5.64149 5.67026 5.74305 5.82681 5.85453 5.93798 5.95482 6.04096 6.10217 6.14022 6.21327 6.24055 6.37940 6.40054 6.57426 6.65386 6.80677 6.88207 7.54148 7.65084 7.71173 7.88089 8.31835 8.38957 9.25515 9.86168 10.51610 11.42230 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.003868 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.439276 B = 7237.978995 C = 8014.490279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.135 4.135 5 C 0.527 3.473 6 O -0.542 6.542 7 N -0.622 5.622 8 C 0.102 3.898 9 C -0.119 4.119 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.221 4.221 15 H 0.075 0.925 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.914 3.086 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.154 3.846 23 C 0.123 3.877 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -17.409 9.496 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.175 4.175 5 C 0.316 3.684 6 O -0.419 6.419 7 N -0.356 5.356 8 C -0.021 4.021 9 C -0.158 4.158 10 C -0.085 4.085 11 C -0.170 4.170 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.350 4.350 15 H 0.093 0.907 16 C -0.207 4.207 17 N -0.572 5.572 18 Si 0.745 3.255 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.028 3.972 23 C 0.002 3.998 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.086 0.914 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.881 -16.732 9.384 20.065 hybrid contribution 0.012 0.357 -0.858 0.930 sum -5.869 -16.375 8.525 19.372 Atomic orbital electron populations 1.21762 0.95766 1.01395 1.02088 1.21543 0.96089 0.96676 1.01868 1.21390 0.92825 0.96461 1.03721 1.21664 0.97870 0.93904 1.04022 1.20349 0.80386 0.91657 0.75966 1.90717 1.54236 1.46765 1.50181 1.49005 1.04726 1.08880 1.72990 1.22183 0.87493 0.91950 1.00458 1.22401 0.96457 0.95511 1.01406 1.21571 0.95547 0.94490 0.96846 1.22856 0.96580 0.97712 0.99830 1.21988 0.99413 0.91307 0.84548 1.44629 1.70070 1.11563 1.06766 1.19028 1.33253 0.97158 0.85533 0.90668 1.24770 1.01286 0.96816 0.97808 1.69790 1.46064 1.12179 1.29168 0.86153 0.77661 0.78379 0.83318 1.21237 1.21569 1.21201 1.21087 0.96537 0.89002 0.90562 1.22316 0.93527 0.85152 0.98840 0.92692 0.92599 0.92879 0.91995 0.92107 0.91269 0.91098 0.89085 0.89272 0.91072 0.91727 0.90411 0.90349 0.92070 0.91641 0.87691 0.96999 0.93723 0.95823 0.96172 0.91388 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.15 16 3 C -0.11 -1.12 4.50 -26.73 -0.12 -1.24 16 4 C -0.13 -1.41 4.78 -27.88 -0.13 -1.54 16 5 C 0.53 8.07 7.89 -10.99 -0.09 7.98 16 6 O -0.54 -10.66 16.20 5.56 0.09 -10.57 16 7 N -0.62 -9.08 3.31 -170.16 -0.56 -9.64 16 8 C 0.10 1.11 6.77 -2.72 -0.02 1.09 16 9 C -0.12 -1.49 6.15 -25.98 -0.16 -1.65 16 10 C -0.08 -1.41 0.68 -154.04 -0.10 -1.51 16 11 C -0.13 -2.38 5.94 -25.24 -0.15 -2.53 16 12 C 0.15 3.70 5.84 -2.30 -0.01 3.69 16 13 N -0.60 -15.77 3.41 -170.41 -0.58 -16.35 16 14 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 17 N -0.92 -27.27 10.10 55.49 0.56 -26.71 16 18 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.15 3.29 6.46 -3.65 -0.02 3.26 16 23 C 0.12 2.08 5.84 -2.79 -0.02 2.06 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.64 7.55 -51.93 -0.39 0.25 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.84 7.89 -51.93 -0.41 0.43 16 36 H 0.08 0.96 7.43 -51.93 -0.39 0.58 16 37 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 38 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 39 H 0.11 2.86 5.89 -51.93 -0.31 2.56 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.02 0.50 7.45 -51.93 -0.39 0.11 16 43 H 0.02 0.47 7.80 -51.93 -0.41 0.06 16 44 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 45 H 0.09 1.80 7.71 -51.93 -0.40 1.40 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -32.88 351.14 -9.19 -42.07 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.10 Total: -2.34 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.87 Total: 0.75 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.58 Total: -52.70 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.88 -9.19 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483839049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.102 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds