Wall clock time and date at job start Fri Apr 10 2020 17:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99922 * 2 1 4 4 C 1.52998 * 109.47142 * 239.99734 * 3 2 1 5 5 C 1.53000 * 109.47282 * 359.97438 * 3 2 1 6 6 C 1.50714 * 109.47062 * 119.99807 * 3 2 1 7 7 O 1.21283 * 119.99398 * 359.97438 * 6 3 2 8 8 N 1.34769 * 119.99979 * 179.97438 * 6 3 2 9 9 C 1.46503 * 119.99918 * 179.97438 * 8 6 3 10 10 H 1.08997 * 108.45011 * 325.00469 * 9 8 6 11 11 C 1.52564 * 108.51393 * 207.31422 * 9 8 6 12 12 C 1.51031 * 109.27916 * 153.60656 * 11 9 8 13 13 C 1.53950 * 109.96963 * 92.06659 * 12 11 9 14 14 N 1.47597 * 112.14052 * 319.41929 * 13 12 11 15 15 C 1.36941 * 118.64281 * 137.84886 * 14 13 12 16 16 H 1.08004 * 119.99842 * 207.19009 * 15 14 13 17 17 C 1.38812 * 120.00060 * 27.18372 * 15 14 13 18 18 N 1.31618 * 119.99884 * 16.73825 * 17 15 14 19 19 Si 1.86796 * 120.00177 * 196.73927 * 17 15 14 20 20 H 1.48500 * 109.47382 * 93.99394 * 19 17 15 21 21 H 1.48496 * 109.47438 * 213.99572 * 19 17 15 22 22 H 1.48511 * 109.47077 * 333.99379 * 19 17 15 23 23 C 1.44576 * 122.71742 * 317.86575 * 14 13 12 24 24 C 1.47096 * 108.51023 * 82.69676 * 9 8 6 25 25 H 1.08013 * 119.99824 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00142 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99934 * 179.72231 * 2 1 3 28 28 H 1.08995 * 109.47392 * 60.00201 * 4 3 2 29 29 H 1.09009 * 109.47306 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47141 * 300.00199 * 4 3 2 31 31 H 1.09002 * 109.47128 * 60.00490 * 5 3 2 32 32 H 1.09006 * 109.46771 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.46903 * 299.99585 * 5 3 2 34 34 H 0.97004 * 120.00210 * 0.02562 * 8 6 3 35 35 H 1.08999 * 109.49136 * 273.70220 * 11 9 8 36 36 H 1.09003 * 109.49452 * 33.76785 * 11 9 8 37 37 H 1.09002 * 109.44153 * 331.90580 * 12 11 9 38 38 H 1.09002 * 109.42260 * 212.21102 * 12 11 9 39 39 H 1.09004 * 108.94689 * 198.73682 * 13 12 11 40 40 H 1.08997 * 108.94542 * 80.10714 * 13 12 11 41 41 H 0.96995 * 119.99987 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.44956 * 330.69223 * 23 14 13 43 43 H 1.09001 * 109.43310 * 210.75007 * 23 14 13 44 44 H 1.09004 * 109.32665 * 304.31658 * 24 9 8 45 45 H 1.09000 * 109.33049 * 63.79051 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 6 1.0692 2.4680 -0.0006 6 6 2.9299 1.3850 1.2306 7 8 2.9345 0.4721 2.0291 8 7 3.6994 2.4707 1.4436 9 6 4.5412 2.5485 2.6401 10 1 4.0172 2.0620 3.4628 11 6 4.7427 4.0184 2.9959 12 6 5.0083 4.1409 4.4776 13 6 6.5238 4.0997 4.7452 14 7 7.2103 3.1001 3.9038 15 6 8.4098 3.4343 3.3338 16 1 8.7206 2.9621 2.4136 17 6 9.2260 4.3802 3.9388 18 7 9.0274 4.7129 5.1966 19 14 10.6063 5.1809 2.9677 20 1 10.1242 6.4580 2.3832 21 1 11.7541 5.4517 3.8701 22 1 11.0381 4.2694 1.8776 23 6 6.6686 1.7827 3.6561 24 6 5.7891 1.8139 2.3817 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 0.0045 28 1 2.3166 1.3284 -2.1392 29 1 3.4885 2.3300 -1.2490 30 1 3.6514 0.5576 -1.2492 31 1 0.4423 2.4105 0.8892 32 1 1.6143 3.4120 -0.0002 33 1 0.4430 2.4101 -0.8909 34 1 3.6953 3.2009 0.8051 35 1 5.5909 4.4146 2.4377 36 1 3.8445 4.5808 2.7409 37 1 4.5260 3.3160 5.0021 38 1 4.6026 5.0848 4.8417 39 1 6.6914 3.8545 5.7940 40 1 6.9461 5.0837 4.5417 41 1 9.5975 5.3740 5.6192 42 1 6.0627 1.4734 4.5077 43 1 7.4857 1.0751 3.5158 44 1 5.5515 0.7931 2.0823 45 1 6.3368 2.3048 1.5773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484717988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:29 Heat of formation + Delta-G solvation = -22.438182 kcal Electronic energy + Delta-G solvation = -23151.377635 eV Core-core repulsion = 19975.882006 eV Total energy + Delta-G solvation = -3175.495629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48604 -39.48202 -37.29011 -36.34689 -34.12746 -33.32157 -32.24144 -30.98896 -28.28146 -27.89032 -25.87880 -25.35172 -24.45959 -21.97908 -21.53122 -21.01700 -19.44295 -18.58269 -17.89265 -17.43162 -16.96720 -16.31752 -16.03381 -15.77673 -15.36010 -15.20906 -15.09213 -14.89170 -14.22666 -14.16345 -13.60908 -13.34880 -13.29617 -13.18583 -13.06015 -13.00761 -12.71769 -12.66858 -12.40514 -12.15171 -12.07669 -12.02769 -11.75154 -11.66213 -11.51572 -11.49747 -11.35079 -10.73762 -10.45464 -10.23584 -10.03923 -8.64639 -7.84098 -5.31057 1.33013 1.47740 1.49017 1.58077 1.69816 2.34578 2.53197 3.29232 3.61480 3.66120 3.74415 3.83546 4.02796 4.10806 4.16095 4.32315 4.44363 4.44527 4.47362 4.67222 4.71448 4.76780 4.79027 4.86603 4.88480 4.95897 4.98970 5.08349 5.11977 5.14828 5.23471 5.25477 5.30568 5.33506 5.49247 5.57757 5.60365 5.69339 5.72041 5.80794 5.84699 6.42390 6.64232 7.20128 7.32316 7.95168 8.35657 9.21159 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.004031 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.851458 B = 6943.873875 C = 7186.980200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.135 4.135 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.586 6.586 8 N -0.714 5.714 9 C 0.168 3.832 10 H 0.055 0.945 11 C -0.100 4.100 12 C -0.130 4.130 13 C 0.188 3.812 14 N -0.600 5.600 15 C -0.264 4.264 16 H 0.063 0.937 17 C -0.046 4.046 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.283 1.283 21 H -0.298 1.298 22 H -0.270 1.270 23 C 0.159 3.841 24 C -0.133 4.133 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.410 0.590 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.078 0.922 39 H -0.009 1.009 40 H 0.044 0.956 41 H 0.249 0.751 42 H 0.033 0.967 43 H 0.036 0.964 44 H 0.049 0.951 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 -1.936 -13.277 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.166 4.166 3 C -0.054 4.054 4 C -0.192 4.192 5 C -0.198 4.198 6 C 0.305 3.695 7 O -0.466 6.466 8 N -0.365 5.365 9 C 0.064 3.936 10 H 0.073 0.927 11 C -0.138 4.138 12 C -0.169 4.169 13 C 0.063 3.937 14 N -0.322 5.322 15 C -0.395 4.395 16 H 0.081 0.919 17 C -0.241 4.241 18 N -0.580 5.580 19 Si 0.792 3.208 20 H -0.210 1.210 21 H -0.225 1.225 22 H -0.195 1.195 23 C 0.032 3.968 24 C -0.174 4.174 25 H 0.137 0.863 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.009 0.991 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.183 -2.475 -12.587 21.443 hybrid contribution 1.294 0.404 -0.041 1.357 sum -15.889 -2.070 -12.628 20.401 Atomic orbital electron populations 1.24157 0.95306 1.03348 0.99178 1.22541 0.96337 0.96511 1.01174 1.19929 0.95782 0.96606 0.93057 1.21831 0.99093 1.02755 0.95516 1.21977 0.98451 0.95827 1.03565 1.21113 0.79539 0.81360 0.87447 1.90667 1.67923 1.39282 1.48708 1.46279 1.43785 1.21006 1.25421 1.19698 0.90226 0.96541 0.87119 0.92656 1.21146 1.01937 0.94041 0.96669 1.21862 0.97000 1.01722 0.96305 1.20785 0.89171 0.92424 0.91332 1.43838 1.20549 1.09951 1.57910 1.19480 0.95772 1.21237 1.02998 0.91881 1.25749 1.00084 1.02470 0.95814 1.70239 1.41674 1.35082 1.11036 0.85315 0.78729 0.78792 0.77967 1.20982 1.22489 1.19522 1.20647 0.94924 0.86807 0.94465 1.21581 0.96682 0.98983 1.00168 0.86339 0.87482 0.88626 0.89296 0.90647 0.93295 0.92478 0.90494 0.88952 0.75289 0.91906 0.89663 0.93013 0.90305 0.99137 0.93748 0.94208 0.94858 0.94546 0.93237 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 13.70 67.78 0.93 -2.10 16 2 C -0.15 -3.07 8.00 25.65 0.21 -2.86 16 3 C -0.05 -0.97 0.84 -53.67 -0.05 -1.02 16 4 C -0.13 -2.08 8.35 71.98 0.60 -1.48 16 5 C -0.14 -1.89 7.02 71.98 0.51 -1.39 16 6 C 0.52 14.40 6.26 87.66 0.55 14.95 16 7 O -0.59 -21.91 15.35 -3.04 -0.05 -21.95 16 8 N -0.71 -18.27 4.70 -452.04 -2.12 -20.39 16 9 C 0.17 5.45 1.94 43.01 0.08 5.54 16 10 H 0.06 2.03 6.72 -2.39 -0.02 2.02 16 11 C -0.10 -3.14 4.98 29.81 0.15 -2.99 16 12 C -0.13 -4.65 5.72 30.27 0.17 -4.48 16 13 C 0.19 8.96 4.67 86.49 0.40 9.37 16 14 N -0.60 -29.82 2.26 -698.38 -1.58 -31.39 16 15 C -0.26 -14.36 9.42 84.03 0.79 -13.57 16 16 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 17 C -0.05 -2.52 4.83 84.86 0.41 -2.11 16 18 N -0.93 -54.94 11.13 21.65 0.24 -54.70 16 19 Si 0.96 44.44 29.59 68.60 2.03 46.47 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 C 0.16 6.98 5.66 87.38 0.49 7.47 16 24 C -0.13 -4.93 5.17 29.40 0.15 -4.78 16 25 H 0.12 1.54 5.69 -2.90 -0.02 1.53 16 26 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 27 H 0.10 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 0.99 7.56 -2.38 -0.02 0.97 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.87 7.50 -2.39 -0.02 0.85 16 32 H 0.08 0.84 7.57 -2.38 -0.02 0.82 16 33 H 0.09 0.86 7.50 -2.39 -0.02 0.84 16 34 H 0.41 7.92 7.42 -92.70 -0.69 7.23 16 35 H 0.06 2.26 7.48 -2.39 -0.02 2.24 16 36 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 37 H 0.05 1.83 7.31 -2.39 -0.02 1.81 16 38 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 39 H -0.01 -0.51 8.03 -2.39 -0.02 -0.53 16 40 H 0.04 2.34 6.42 -2.39 -0.02 2.33 16 41 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 42 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 43 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 44 H 0.05 1.86 7.67 -2.38 -0.02 1.84 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -68.04 346.75 4.19 -63.85 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.26 Total: 17.56 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.40 Total: 0.55 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.46 Total: -106.49 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.04 4.19 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484717988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.416 kcal (2) G-P(sol) polarization free energy of solvation -68.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds