Wall clock time and date at job start Fri Apr 10 2020 17:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47143 * 2 1 4 4 C 1.53000 * 109.47354 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47356 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 3 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 3 8 8 N 1.46505 * 109.47212 * 174.99693 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46951 * 89.99797 * 13 11 9 15 15 H 1.48500 * 109.47313 * 210.00112 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00153 * 13 11 9 17 17 N 1.46500 * 109.46849 * 295.00050 * 5 4 3 18 18 C 1.34779 * 120.00196 * 84.99779 * 17 5 4 19 19 O 1.21614 * 119.99889 * 0.02562 * 18 17 5 20 20 C 1.47105 * 119.99878 * 179.97438 * 18 17 5 21 21 C 1.32999 * 119.99552 * 179.97438 * 20 18 17 22 22 C 1.51398 * 136.31699 * 359.63647 * 21 20 18 23 23 C 1.53381 * 87.51688 * 206.05453 * 22 21 20 24 24 C 1.51405 * 136.31239 * 179.97438 * 21 20 18 25 25 H 1.09004 * 109.47499 * 60.00121 * 1 2 3 26 26 H 1.09006 * 109.47247 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47301 * 299.99986 * 1 2 3 28 28 H 1.08996 * 109.47271 * 240.00078 * 2 1 3 29 29 H 1.09004 * 109.47499 * 119.99879 * 2 1 3 30 30 H 1.09006 * 109.47011 * 59.99836 * 3 2 1 31 31 H 1.08994 * 109.46764 * 300.00195 * 3 2 1 32 32 H 1.08996 * 109.46705 * 59.99742 * 4 3 2 33 33 H 1.09004 * 109.46936 * 300.00219 * 4 3 2 34 34 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 35 35 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 36 36 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 37 37 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 38 38 H 0.96998 * 120.00051 * 264.99732 * 17 5 4 39 39 H 1.07991 * 120.00153 * 0.02562 * 20 18 17 40 40 H 1.09000 * 113.56634 * 320.63267 * 22 21 20 41 41 H 1.09000 * 113.56223 * 91.37074 * 22 21 20 42 42 H 1.09005 * 113.96691 * 220.29161 * 23 22 21 43 43 H 1.09000 * 113.60144 * 88.79313 * 23 22 21 44 44 H 1.09000 * 113.56392 * 268.63281 * 24 21 20 45 45 H 1.09002 * 113.56140 * 39.36768 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6449 3.4238 0.8430 7 6 5.6047 2.8869 0.1277 8 7 6.1029 4.2595 0.0084 9 6 7.4467 4.5097 0.0912 10 1 8.1392 3.6951 0.2440 11 6 7.9187 5.8101 -0.0212 12 7 7.0747 6.8028 -0.2069 13 14 9.7519 6.1514 0.0911 14 1 10.3525 6.0802 -1.2652 15 1 9.9693 7.5065 0.6583 16 1 10.3910 5.1387 0.9693 17 7 3.6929 3.5403 -1.2505 18 6 2.4756 4.1072 -1.3660 19 8 1.6986 4.0752 -0.4310 20 6 2.0872 4.7657 -2.6228 21 6 0.8857 5.3247 -2.7370 22 6 -0.3322 5.4923 -1.8534 23 6 -1.1680 5.5820 -3.1364 24 6 0.1234 6.0720 -3.8106 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9336 0.9286 -0.8891 33 1 3.9329 0.9289 0.8909 34 1 6.0356 2.2739 -0.6639 35 1 5.8893 2.4800 1.0980 36 1 5.4809 4.9910 -0.1284 37 1 7.4045 7.7117 -0.2851 38 1 4.3126 3.5662 -1.9962 39 1 2.7772 4.7945 -3.4530 40 1 -0.5570 4.6131 -1.2497 41 1 -0.3255 6.4145 -1.2724 42 1 -1.9573 6.3329 -3.0991 43 1 -1.5150 4.6147 -3.4998 44 1 0.2551 7.1531 -3.7661 45 1 0.2725 5.6682 -4.8120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485463570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:41 Heat of formation + Delta-G solvation = -7.564507 kcal Electronic energy + Delta-G solvation = -22308.409264 eV Core-core repulsion = 19133.558606 eV Total energy + Delta-G solvation = -3174.850658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.77162 -38.42913 -36.32214 -34.86213 -33.42557 -31.59690 -30.56089 -29.93036 -27.16753 -25.77380 -24.20873 -23.42305 -22.22695 -21.00747 -20.68234 -20.00125 -18.10272 -17.11260 -16.69475 -16.00837 -15.56604 -15.29986 -14.71497 -14.53605 -14.36353 -13.85259 -13.60767 -13.27290 -13.13332 -12.69431 -12.63009 -12.47551 -12.13201 -11.89535 -11.85000 -11.70062 -11.26112 -11.05478 -11.03641 -10.88649 -10.80857 -10.75566 -10.47149 -10.32553 -10.25319 -9.99046 -9.71122 -9.30342 -9.05008 -8.90215 -8.45881 -6.94542 -5.76927 -3.06719 1.57323 3.42618 3.47985 3.49867 3.57410 3.72850 4.44220 4.52462 4.57640 4.74309 4.91044 5.05439 5.10224 5.22779 5.34396 5.45443 5.50484 5.52374 5.56495 5.59065 5.61543 5.67851 5.74859 5.88174 5.92437 5.98722 6.02043 6.03638 6.08313 6.18328 6.21257 6.25850 6.31378 6.37993 6.52351 6.53671 6.68841 6.73151 6.77830 7.07384 7.68665 8.04196 8.40927 8.71830 9.52702 10.09386 10.44947 11.45347 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.004725 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.931226 B = 5924.886456 C = 7798.480966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.139 3.861 6 H 0.086 0.914 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.931 5.931 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.706 5.706 18 C 0.550 3.450 19 O -0.545 6.545 20 C -0.188 4.188 21 C -0.072 4.072 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.108 4.108 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.032 0.968 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.403 0.597 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.384 -8.211 -6.132 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.165 4.165 5 C 0.034 3.966 6 H 0.104 0.896 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.356 5.356 18 C 0.339 3.661 19 O -0.425 6.425 20 C -0.209 4.209 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.180 4.180 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.238 0.762 39 H 0.148 0.852 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.736 -8.264 -5.420 18.582 hybrid contribution 1.368 0.545 -0.435 1.536 sum -14.368 -7.719 -5.856 17.329 Atomic orbital electron populations 1.21737 0.96316 1.00760 1.01813 1.21578 0.95577 0.97873 1.01279 1.21660 0.94784 0.95154 1.03248 1.21971 0.96102 0.96416 1.02010 1.21257 0.95846 0.92345 0.87124 0.89588 1.20964 0.89453 0.89318 0.98663 1.42357 1.05387 1.02070 1.87796 1.19222 0.83698 0.92477 1.41978 0.91174 1.24743 0.97644 0.95658 1.02754 1.69672 1.32854 0.98981 1.56397 0.86196 0.85175 0.77266 0.77566 1.21737 1.21787 1.20762 1.45850 1.15928 1.56874 1.16957 1.18275 0.81883 0.78165 0.87758 1.90738 1.51537 1.59887 1.40376 1.21696 0.95783 1.04958 0.98455 1.23329 0.92679 0.93242 0.98188 1.22156 0.91969 1.03453 0.96278 1.22729 0.96168 1.01650 0.97486 1.22326 0.94453 1.00354 0.97346 0.93024 0.93381 0.92820 0.92673 0.92488 0.91601 0.91686 0.92073 0.91305 0.95883 0.95024 0.77933 0.93511 0.76238 0.85231 0.89667 0.88663 0.90704 0.89994 0.88300 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.15 0.37 -1.24 16 2 C -0.13 -1.46 5.93 -26.73 -0.16 -1.62 16 3 C -0.11 -1.55 3.81 -26.73 -0.10 -1.65 16 4 C -0.13 -1.77 4.89 -26.73 -0.13 -1.90 16 5 C 0.14 2.37 2.42 -67.94 -0.16 2.21 16 6 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 7 C 0.14 2.84 5.82 -4.04 -0.02 2.82 16 8 N -0.73 -18.32 5.43 -59.91 -0.33 -18.65 16 9 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 10 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 12 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 13 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 N -0.71 -11.60 4.47 -54.99 -0.25 -11.84 16 18 C 0.55 9.24 6.33 -12.66 -0.08 9.16 16 19 O -0.55 -10.22 12.29 5.27 0.06 -10.16 16 20 C -0.19 -2.70 10.03 -37.80 -0.38 -3.07 16 21 C -0.07 -0.94 6.93 -100.49 -0.70 -1.64 16 22 C -0.10 -1.24 6.99 -27.56 -0.19 -1.43 16 23 C -0.14 -1.32 8.17 -26.18 -0.21 -1.53 16 24 C -0.11 -1.05 7.96 -27.39 -0.22 -1.27 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 31 H 0.06 1.00 5.65 -51.93 -0.29 0.71 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.39 10.38 7.33 -40.82 -0.30 10.08 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.40 6.36 8.59 -40.82 -0.35 6.01 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.08 1.16 7.49 -51.93 -0.39 0.77 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -31.16 363.46 -9.59 -40.75 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -8.02 Total: 13.07 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.24 Total: -8.50 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.15 Total: -57.95 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.16 -9.59 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485463570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.182 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds