Wall clock time and date at job start Fri Apr 10 2020 17:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47143 * 2 1 4 4 C 1.53000 * 109.47354 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47356 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 3 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 3 8 8 N 1.46505 * 109.47212 * 174.99693 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46951 * 89.99797 * 13 11 9 15 15 H 1.48500 * 109.47313 * 210.00112 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00153 * 13 11 9 17 17 N 1.46500 * 109.46849 * 295.00050 * 5 4 3 18 18 C 1.34779 * 120.00196 * 84.99779 * 17 5 4 19 19 O 1.21614 * 119.99889 * 0.02562 * 18 17 5 20 20 C 1.47105 * 119.99878 * 179.97438 * 18 17 5 21 21 C 1.32999 * 119.99552 * 179.97438 * 20 18 17 22 22 C 1.51398 * 136.31699 * 359.63647 * 21 20 18 23 23 C 1.53381 * 87.51688 * 206.05453 * 22 21 20 24 24 C 1.51405 * 136.31239 * 179.97438 * 21 20 18 25 25 H 1.09004 * 109.47499 * 60.00121 * 1 2 3 26 26 H 1.09006 * 109.47247 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47301 * 299.99986 * 1 2 3 28 28 H 1.08996 * 109.47271 * 240.00078 * 2 1 3 29 29 H 1.09004 * 109.47499 * 119.99879 * 2 1 3 30 30 H 1.09006 * 109.47011 * 59.99836 * 3 2 1 31 31 H 1.08994 * 109.46764 * 300.00195 * 3 2 1 32 32 H 1.08996 * 109.46705 * 59.99742 * 4 3 2 33 33 H 1.09004 * 109.46936 * 300.00219 * 4 3 2 34 34 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 35 35 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 36 36 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 37 37 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 38 38 H 0.96998 * 120.00051 * 264.99732 * 17 5 4 39 39 H 1.07991 * 120.00153 * 0.02562 * 20 18 17 40 40 H 1.09000 * 113.56634 * 320.63267 * 22 21 20 41 41 H 1.09000 * 113.56223 * 91.37074 * 22 21 20 42 42 H 1.09005 * 113.96691 * 220.29161 * 23 22 21 43 43 H 1.09000 * 113.60144 * 88.79313 * 23 22 21 44 44 H 1.09000 * 113.56392 * 268.63281 * 24 21 20 45 45 H 1.09002 * 113.56140 * 39.36768 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6449 3.4238 0.8430 7 6 5.6047 2.8869 0.1277 8 7 6.1029 4.2595 0.0084 9 6 7.4467 4.5097 0.0912 10 1 8.1392 3.6951 0.2440 11 6 7.9187 5.8101 -0.0212 12 7 7.0747 6.8028 -0.2069 13 14 9.7519 6.1514 0.0911 14 1 10.3525 6.0802 -1.2652 15 1 9.9693 7.5065 0.6583 16 1 10.3910 5.1387 0.9693 17 7 3.6929 3.5403 -1.2505 18 6 2.4756 4.1072 -1.3660 19 8 1.6986 4.0752 -0.4310 20 6 2.0872 4.7657 -2.6228 21 6 0.8857 5.3247 -2.7370 22 6 -0.3322 5.4923 -1.8534 23 6 -1.1680 5.5820 -3.1364 24 6 0.1234 6.0720 -3.8106 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9336 0.9286 -0.8891 33 1 3.9329 0.9289 0.8909 34 1 6.0356 2.2739 -0.6639 35 1 5.8893 2.4800 1.0980 36 1 5.4809 4.9910 -0.1284 37 1 7.4045 7.7117 -0.2851 38 1 4.3126 3.5662 -1.9962 39 1 2.7772 4.7945 -3.4530 40 1 -0.5570 4.6131 -1.2497 41 1 -0.3255 6.4145 -1.2724 42 1 -1.9573 6.3329 -3.0991 43 1 -1.5150 4.6147 -3.4998 44 1 0.2551 7.1531 -3.7661 45 1 0.2725 5.6682 -4.8120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485463570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:40 Heat of formation + Delta-G solvation = -25.968371 kcal Electronic energy + Delta-G solvation = -22309.207316 eV Core-core repulsion = 19133.558606 eV Total energy + Delta-G solvation = -3175.648710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04004 -39.43294 -37.71891 -36.26578 -35.05224 -33.13437 -32.13933 -31.03958 -28.69462 -26.65400 -25.91734 -24.45161 -23.76411 -22.21202 -21.80057 -21.34206 -19.43475 -18.87257 -17.99224 -17.28121 -16.76301 -16.45963 -16.22608 -15.75915 -15.52192 -15.39496 -15.11172 -14.81382 -14.44901 -14.15465 -13.83391 -13.50457 -13.32491 -13.16648 -12.91115 -12.85676 -12.77581 -12.60061 -12.48568 -12.12909 -12.01682 -11.91903 -11.85738 -11.80914 -11.43721 -11.40479 -11.33582 -10.97798 -10.54733 -10.15918 -9.77656 -9.01545 -7.94314 -5.24337 0.45938 1.48033 1.49626 1.58090 2.30726 2.47684 2.56184 3.39371 3.46281 3.61729 3.65605 3.85206 4.02617 4.07807 4.20642 4.27752 4.30771 4.33340 4.36168 4.56182 4.61425 4.65014 4.76022 4.84686 4.86190 4.91174 4.94675 4.96650 4.99108 5.05614 5.08680 5.14321 5.22230 5.29217 5.33761 5.37513 5.43324 5.50056 5.58538 5.68526 5.73905 6.26148 6.73032 7.33326 7.40842 8.07097 8.31213 9.28807 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.004725 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.931226 B = 5924.886456 C = 7798.480966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.117 4.117 5 C 0.149 3.851 6 H 0.055 0.945 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.073 4.073 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.285 1.285 15 H -0.299 1.299 16 H -0.270 1.270 17 N -0.705 5.705 18 C 0.544 3.456 19 O -0.573 6.573 20 C -0.214 4.214 21 C -0.074 4.074 22 C -0.114 4.114 23 C -0.127 4.127 24 C -0.099 4.099 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.374 0.626 37 H 0.250 0.750 38 H 0.406 0.594 39 H 0.146 0.854 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 -9.361 -7.342 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.044 3.956 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.212 1.212 15 H -0.225 1.225 16 H -0.194 1.194 17 N -0.355 5.355 18 C 0.334 3.666 19 O -0.455 6.455 20 C -0.235 4.235 21 C -0.076 4.076 22 C -0.151 4.151 23 C -0.164 4.164 24 C -0.136 4.136 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.206 0.794 37 H 0.059 0.941 38 H 0.241 0.759 39 H 0.163 0.837 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.895 -9.469 -6.636 19.656 hybrid contribution 1.341 0.871 -0.015 1.599 sum -14.555 -8.597 -6.651 18.166 Atomic orbital electron populations 1.21726 0.95759 1.01825 1.01209 1.21547 0.96092 0.95982 1.02251 1.21521 0.94623 0.96567 1.01271 1.21905 0.96070 0.94237 1.03331 1.21067 0.93942 0.94024 0.86571 0.92645 1.21110 0.91071 0.86841 0.99103 1.42537 1.04530 1.03799 1.87782 1.19652 0.85010 0.92752 1.40338 0.90313 1.25563 1.01924 0.95620 1.03456 1.69840 1.34744 0.99061 1.58316 0.85133 0.80143 0.76719 0.77688 1.21164 1.22542 1.19438 1.45825 1.16046 1.56959 1.16677 1.18750 0.81548 0.77804 0.88451 1.90718 1.52250 1.61007 1.41573 1.21725 0.97122 1.06694 0.97944 1.23881 0.92099 0.91730 0.99931 1.22275 0.92985 1.02419 0.97441 1.22702 0.96285 1.02716 0.94688 1.22401 0.93313 1.00650 0.97189 0.93618 0.91429 0.93510 0.91602 0.91491 0.93968 0.93361 0.90545 0.89993 0.94272 0.94669 0.79411 0.94114 0.75855 0.83652 0.91807 0.88850 0.88528 0.89284 0.87035 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.12 -2.66 5.93 30.59 0.18 -2.47 16 3 C -0.10 -2.87 3.81 30.60 0.12 -2.75 16 4 C -0.12 -3.19 4.89 30.59 0.15 -3.04 16 5 C 0.15 5.17 2.42 44.99 0.11 5.27 16 6 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 7 C 0.15 5.69 5.82 86.38 0.50 6.19 16 8 N -0.74 -37.61 5.43 -343.45 -1.87 -39.48 16 9 C -0.25 -13.61 9.99 84.03 0.84 -12.77 16 10 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 12 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 13 Si 0.97 45.97 29.55 68.60 2.03 47.99 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 N -0.71 -23.73 4.47 -446.14 -1.99 -25.72 16 18 C 0.54 18.96 6.33 86.57 0.55 19.51 16 19 O -0.57 -22.66 12.29 -4.07 -0.05 -22.71 16 20 C -0.21 -6.21 10.03 23.43 0.23 -5.98 16 21 C -0.07 -1.90 6.93 -17.17 -0.12 -2.02 16 22 C -0.11 -2.77 6.99 30.06 0.21 -2.56 16 23 C -0.13 -2.06 8.17 30.95 0.25 -1.81 16 24 C -0.10 -1.70 7.96 30.17 0.24 -1.46 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.37 7.84 -2.38 -0.02 1.35 16 31 H 0.05 1.52 5.65 -2.39 -0.01 1.50 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 37 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.41 12.99 8.59 -92.71 -0.80 12.20 16 39 H 0.15 3.60 8.06 -2.92 -0.02 3.58 16 40 H 0.06 1.81 7.49 -2.39 -0.02 1.79 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.90 363.46 2.33 -65.56 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -0.51 Total: 43.74 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 4.45 Total: -9.96 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -3.58 Total: -124.63 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -67.90 2.33 -65.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485463570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.594 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds