Wall clock time and date at job start Fri Apr 10 2020 17:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32994 * 120.00219 * 2 1 4 4 C 1.50709 * 120.00185 * 179.97438 * 3 2 1 5 5 C 1.47103 * 120.00117 * 359.97438 * 3 2 1 6 6 O 1.21612 * 119.99726 * 0.02562 * 5 3 2 7 7 N 1.34773 * 120.00261 * 179.97438 * 5 3 2 8 8 C 1.46504 * 120.00130 * 180.02562 * 7 5 3 9 9 C 1.52992 * 109.46879 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.45231 * 64.94761 * 9 8 7 11 11 C 1.54874 * 109.44731 * 184.86747 * 9 8 7 12 12 C 1.47089 * 110.32225 * 191.29186 * 11 9 8 13 13 C 1.52564 * 114.33315 * 297.19135 * 12 11 9 14 14 C 1.50886 * 109.35118 * 85.02468 * 13 12 11 15 15 C 1.53943 * 110.09085 * 268.11675 * 14 13 12 16 16 N 1.44582 * 109.45218 * 304.99389 * 9 8 7 17 17 C 1.36931 * 118.63939 * 329.27107 * 16 9 8 18 18 H 1.08002 * 120.00700 * 331.91303 * 17 16 9 19 19 C 1.38813 * 119.99658 * 151.91201 * 17 16 9 20 20 N 1.31620 * 120.00419 * 344.14719 * 19 17 16 21 21 Si 1.86807 * 119.99976 * 164.14892 * 19 17 16 22 22 H 1.48501 * 109.47204 * 94.36908 * 21 19 17 23 23 H 1.48504 * 109.46832 * 214.36855 * 21 19 17 24 24 H 1.48501 * 109.47051 * 334.36713 * 21 19 17 25 25 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47137 * 300.00283 * 1 2 3 27 27 H 1.09004 * 109.46561 * 60.00213 * 1 2 3 28 28 H 1.08004 * 120.00064 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46770 * 270.00214 * 4 3 2 30 30 H 1.09001 * 109.47027 * 29.99904 * 4 3 2 31 31 H 1.08991 * 109.46968 * 149.99971 * 4 3 2 32 32 H 0.97003 * 120.00115 * 0.02562 * 7 5 3 33 33 H 1.09001 * 109.46760 * 59.99777 * 8 7 5 34 34 H 1.09000 * 109.46705 * 300.00266 * 8 7 5 35 35 H 1.09000 * 109.32389 * 311.54893 * 11 9 8 36 36 H 1.08999 * 109.33237 * 71.02907 * 11 9 8 37 37 H 1.09000 * 108.51366 * 175.92890 * 12 11 9 38 38 H 1.09010 * 108.39173 * 58.35548 * 12 11 9 39 39 H 1.09000 * 109.48842 * 325.06401 * 13 12 11 40 40 H 1.08993 * 109.51385 * 205.00385 * 13 12 11 41 41 H 1.08998 * 109.36721 * 147.92566 * 14 13 12 42 42 H 1.09000 * 109.26281 * 28.23999 * 14 13 12 43 43 H 1.08995 * 108.94758 * 279.87215 * 15 14 13 44 44 H 1.09003 * 108.87208 * 161.19740 * 15 14 13 45 45 H 0.97000 * 120.00546 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6791 1.1517 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2204 2.4257 -0.0006 7 7 2.1104 3.5929 0.0000 8 6 1.3779 4.8617 0.0000 9 6 2.3722 6.0245 0.0000 10 1 2.9389 6.0175 -0.9311 11 6 1.6014 7.3620 0.1239 12 6 2.4997 8.4959 -0.1426 13 6 3.6520 8.6312 0.8481 14 6 4.7932 7.7459 0.4116 15 6 4.6744 6.3631 1.0776 16 7 3.2794 5.8823 1.1168 17 6 2.8257 5.2762 2.2577 18 1 1.7772 5.3207 2.5127 19 6 3.7136 4.6043 3.0867 20 7 4.9089 4.2771 2.6435 21 14 3.2119 4.1645 4.8316 22 1 2.6722 2.7813 4.8577 23 1 4.3960 4.2508 5.7237 24 1 2.1688 5.1118 5.3004 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 2.0470 -0.9353 0.0004 29 1 4.0419 1.1519 1.0284 30 1 4.0426 0.2616 -0.5129 31 1 4.0426 2.0415 -0.5133 32 1 3.0805 3.5929 0.0003 33 1 0.7509 4.9192 0.8897 34 1 0.7516 4.9195 -0.8903 35 1 0.7822 7.3741 -0.5950 36 1 1.1953 7.4525 1.1313 37 1 1.9136 9.4146 -0.1194 38 1 2.9157 8.3773 -1.1432 39 1 3.3162 8.3291 1.8400 40 1 3.9868 9.6680 0.8776 41 1 5.7383 8.2059 0.6999 42 1 4.7636 7.6290 -0.6717 43 1 5.0553 6.4273 2.0968 44 1 5.2792 5.6492 0.5184 45 1 5.5292 3.8073 3.2226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485478688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:38 Heat of formation + Delta-G solvation = -26.469864 kcal Electronic energy + Delta-G solvation = -23829.242455 eV Core-core repulsion = 20653.571999 eV Total energy + Delta-G solvation = -3175.670456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88103 -39.63877 -36.21713 -35.71274 -35.20713 -33.32841 -32.46669 -30.85067 -28.59237 -27.29109 -25.73702 -25.20306 -24.11683 -22.42510 -21.31184 -20.78214 -20.01239 -18.04455 -17.27779 -17.16359 -16.54017 -16.23826 -15.96128 -15.75959 -15.21472 -15.02404 -14.90087 -14.47293 -14.29303 -13.91659 -13.67544 -13.59756 -13.40876 -13.36028 -13.10396 -12.88196 -12.82525 -12.76009 -12.67625 -12.38025 -12.28407 -12.00181 -11.53933 -11.39636 -11.31187 -11.19648 -10.99559 -10.41929 -10.33655 -10.06991 -9.56264 -8.52768 -7.77981 -5.20179 0.54519 1.39726 1.45619 1.50263 2.36982 2.53515 2.65154 3.36800 3.61308 3.92655 4.02381 4.04931 4.09988 4.27760 4.41278 4.42945 4.50020 4.57774 4.62705 4.68054 4.80119 4.83180 4.86314 4.92069 5.01446 5.06855 5.09937 5.14091 5.26038 5.26997 5.27092 5.38709 5.43406 5.55972 5.56453 5.67432 5.73105 5.74080 5.78329 5.84096 5.91092 6.49065 6.85664 7.28819 7.46104 8.02329 8.40944 9.25469 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.007166 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.209271 B = 3906.492676 C = 4838.267440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.205 4.205 4 C -0.099 4.099 5 C 0.532 3.468 6 O -0.590 6.590 7 N -0.689 5.689 8 C 0.134 3.866 9 C 0.173 3.827 10 H 0.055 0.945 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.103 4.103 14 C -0.132 4.132 15 C 0.190 3.810 16 N -0.586 5.586 17 C -0.234 4.234 18 H 0.044 0.956 19 C -0.023 4.023 20 N -0.913 5.913 21 Si 0.927 3.073 22 H -0.299 1.299 23 H -0.292 1.292 24 H -0.284 1.284 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.156 0.844 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.408 0.592 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.003 0.997 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -0.549 -8.274 8.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.208 4.208 4 C -0.156 4.156 5 C 0.322 3.678 6 O -0.474 6.474 7 N -0.338 5.338 8 C 0.009 3.991 9 C 0.065 3.935 10 H 0.073 0.927 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.171 4.171 15 C 0.065 3.935 16 N -0.309 5.309 17 C -0.365 4.365 18 H 0.062 0.938 19 C -0.219 4.219 20 N -0.559 5.559 21 Si 0.758 3.242 22 H -0.227 1.227 23 H -0.219 1.219 24 H -0.210 1.210 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.174 0.826 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.245 0.755 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.021 0.979 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.098 -0.560 -8.213 8.495 hybrid contribution 0.308 -0.238 1.611 1.657 sum -1.790 -0.799 -6.602 6.887 Atomic orbital electron populations 1.20895 0.92339 1.01561 1.02131 1.23865 0.96954 0.97212 0.91129 1.21670 0.97350 0.92825 1.08966 1.20620 0.89747 1.03141 1.02050 1.18893 0.87071 0.85420 0.76375 1.90672 1.14764 1.88408 1.53566 1.45751 1.11117 1.05063 1.71869 1.21418 0.94558 0.83569 0.99590 1.20669 0.90166 0.91974 0.90656 0.92718 1.21285 0.98552 0.96102 1.00919 1.20271 0.96660 0.97802 0.99000 1.20905 0.95613 0.98382 0.99192 1.21943 0.98388 0.96669 1.00117 1.20775 0.83832 0.90707 0.98191 1.43741 1.09173 1.66561 1.11390 1.18903 0.92824 1.25445 0.99281 0.93835 1.25211 0.97377 0.98863 1.00482 1.70103 1.07658 1.43245 1.34869 0.85898 0.76803 0.77378 0.84082 1.22654 1.21866 1.20963 0.90356 0.93000 0.91769 0.82612 0.92647 0.88811 0.92655 0.75505 0.94351 0.91903 0.90997 0.94069 0.91949 0.92020 0.93988 0.91786 0.92006 0.92223 0.94355 0.97902 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.26 8.45 71.23 0.60 -2.66 16 2 C -0.07 -2.02 9.95 24.52 0.24 -1.78 16 3 C -0.21 -6.96 6.00 -18.70 -0.11 -7.07 16 4 C -0.10 -3.02 9.61 71.24 0.68 -2.33 16 5 C 0.53 21.79 7.72 86.57 0.67 22.46 16 6 O -0.59 -26.35 13.07 -4.07 -0.05 -26.40 16 7 N -0.69 -28.13 4.66 -466.72 -2.18 -30.30 16 8 C 0.13 5.26 4.52 86.38 0.39 5.65 16 9 C 0.17 6.42 2.19 45.99 0.10 6.52 16 10 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 11 C -0.13 -4.12 5.06 29.40 0.15 -3.97 16 12 C -0.10 -2.82 5.16 28.61 0.15 -2.68 16 13 C -0.10 -3.26 5.51 29.76 0.16 -3.10 16 14 C -0.13 -4.42 5.71 30.23 0.17 -4.25 16 15 C 0.19 8.18 4.66 86.49 0.40 8.59 16 16 N -0.59 -25.60 1.77 -674.25 -1.20 -26.80 16 17 C -0.23 -11.78 7.63 84.03 0.64 -11.14 16 18 H 0.04 2.35 6.74 -2.91 -0.02 2.33 16 19 C -0.02 -1.18 4.85 84.86 0.41 -0.77 16 20 N -0.91 -48.50 11.14 21.65 0.24 -48.26 16 21 Si 0.93 44.69 29.58 68.60 2.03 46.72 16 22 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.79 7.22 -2.39 -0.02 1.77 16 27 H 0.06 2.03 7.22 -2.39 -0.02 2.01 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.05 1.78 6.70 -2.39 -0.02 1.76 16 32 H 0.41 17.18 6.18 -92.71 -0.57 16.61 16 33 H 0.04 1.72 6.84 -2.39 -0.02 1.70 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.60 7.35 -2.38 -0.02 1.58 16 39 H 0.04 1.60 7.48 -2.39 -0.02 1.58 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.82 7.31 -2.39 -0.02 1.80 16 43 H 0.04 1.91 6.46 -2.39 -0.02 1.89 16 44 H 0.00 0.13 8.02 -2.39 -0.02 0.12 16 45 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -58.86 343.69 3.90 -54.96 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.39 Total: 26.61 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 4.67 Total: 3.47 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.13 Total: -105.36 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -58.86 3.90 -54.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485478688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.491 kcal (2) G-P(sol) polarization free energy of solvation -58.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds