Wall clock time and date at job start Fri Apr 10 2020 17:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47261 * 2 1 4 4 C 1.50702 * 120.00197 * 87.55622 * 3 2 1 5 5 C 1.32991 * 120.00239 * 267.55500 * 3 2 1 6 6 C 1.47110 * 119.99933 * 7.58281 * 5 3 2 7 7 O 1.21611 * 119.99433 * 6.24764 * 6 5 3 8 8 N 1.34774 * 120.00074 * 186.53204 * 6 5 3 9 9 C 1.46497 * 119.99857 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99817 * 180.02562 * 8 6 5 11 11 H 1.08996 * 109.47162 * 359.97438 * 10 8 6 12 12 C 1.52996 * 109.47462 * 119.99425 * 10 8 6 13 13 N 1.46500 * 109.47099 * 304.99971 * 12 10 8 14 14 C 1.36939 * 120.00047 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00038 * 179.97438 * 14 13 12 17 17 N 1.31611 * 119.99888 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99904 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46737 * 89.99984 * 18 16 14 20 20 H 1.48498 * 109.47259 * 210.00157 * 18 16 14 21 21 H 1.48494 * 109.47269 * 330.00442 * 18 16 14 22 22 C 1.53007 * 109.46680 * 239.99508 * 10 8 6 23 23 C 1.53001 * 117.49715 * 128.74702 * 22 10 8 24 24 C 1.53002 * 117.49859 * 60.08643 * 22 10 8 25 25 H 1.09002 * 109.46843 * 59.99743 * 1 2 3 26 26 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47299 * 300.00265 * 1 2 3 28 28 H 1.08997 * 109.46873 * 239.99866 * 2 1 3 29 29 H 1.09002 * 109.46843 * 120.00257 * 2 1 3 30 30 H 1.09004 * 109.47038 * 270.00104 * 4 3 2 31 31 H 1.09004 * 109.47187 * 29.99499 * 4 3 2 32 32 H 1.08997 * 109.47379 * 149.99834 * 4 3 2 33 33 H 1.08002 * 120.00478 * 187.58290 * 5 3 2 34 34 H 1.09005 * 109.46907 * 90.00767 * 9 8 6 35 35 H 1.09002 * 109.46864 * 210.00355 * 9 8 6 36 36 H 1.08996 * 109.47429 * 330.00701 * 9 8 6 37 37 H 1.09001 * 109.46839 * 64.99897 * 12 10 8 38 38 H 1.09001 * 109.47169 * 184.99951 * 12 10 8 39 39 H 0.96998 * 119.99709 * 359.97438 * 13 12 10 40 40 H 0.97002 * 120.00228 * 180.02562 * 17 16 14 41 41 H 1.08996 * 115.54781 * 274.41400 * 22 10 8 42 42 H 1.08997 * 117.49967 * 359.97438 * 23 22 10 43 43 H 1.08993 * 117.49743 * 145.02003 * 23 22 10 44 44 H 1.08997 * 117.49362 * 214.97855 * 24 22 10 45 45 H 1.08992 * 117.49801 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2311 2.1498 1.3039 5 6 2.3004 2.0313 -1.1507 6 6 1.9511 1.3849 -2.4251 7 8 1.3166 0.3475 -2.4268 8 7 2.3391 1.9395 -3.5906 9 6 3.1083 3.1863 -3.5883 10 6 1.9907 1.2960 -4.8598 11 1 1.4220 0.3874 -4.6624 12 6 1.1461 2.2539 -5.7023 13 7 -0.0195 2.6873 -4.9279 14 6 -0.9248 3.5537 -5.4801 15 1 -0.7797 3.9172 -6.4867 16 6 -2.0296 3.9639 -4.7464 17 7 -2.8999 4.7962 -5.2774 18 14 -2.2816 3.3334 -3.0062 19 1 -1.6149 4.2498 -2.0464 20 1 -3.7348 3.2747 -2.7066 21 1 -1.6953 1.9748 -2.8821 22 6 3.2705 0.9413 -5.6198 23 6 3.4153 -0.4947 -6.1277 24 6 4.2537 -0.0141 -4.9405 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3110 2.6678 1.5745 31 1 2.4881 1.4340 2.0848 32 1 3.0378 2.8747 1.1956 33 1 2.7745 3.0017 -1.1495 34 1 4.1732 2.9561 -3.5534 35 1 2.8881 3.7507 -4.4944 36 1 2.8360 3.7796 -2.7154 37 1 1.7451 3.1229 -5.9745 38 1 0.8126 1.7448 -6.6066 39 1 -0.1500 2.3605 -4.0240 40 1 -3.6717 5.0832 -4.7646 41 1 3.6871 1.7377 -6.2364 42 1 2.5993 -1.1867 -5.9201 43 1 3.9277 -0.6429 -7.0782 44 1 5.3172 0.1536 -5.1106 45 1 3.9891 -0.3895 -3.9521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485809917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:43 Heat of formation + Delta-G solvation = 23.353982 kcal Electronic energy + Delta-G solvation = -23436.729180 eV Core-core repulsion = 20263.219248 eV Total energy + Delta-G solvation = -3173.509932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11118 -37.90383 -35.86185 -35.09926 -34.08901 -31.53470 -30.72099 -29.13040 -27.63818 -26.52415 -24.12374 -23.46731 -22.33611 -21.42666 -21.00445 -19.33060 -17.93324 -17.62495 -17.17228 -15.97036 -15.34305 -14.93424 -14.75126 -14.40506 -14.07994 -13.86330 -13.65232 -13.31437 -12.88866 -12.83840 -12.70781 -12.64502 -12.42957 -12.05423 -11.95814 -11.82019 -11.67805 -11.48144 -11.10129 -10.99447 -10.89713 -10.74141 -10.60766 -10.23688 -10.11743 -10.03537 -9.55736 -9.14923 -9.03413 -8.85580 -8.22915 -7.18199 -5.73772 -3.08006 1.48924 3.20523 3.41322 3.48988 3.52460 3.52818 4.00578 4.60389 4.64401 4.76302 4.76942 4.99635 5.06888 5.11716 5.33916 5.38915 5.41220 5.43026 5.51511 5.54123 5.62862 5.65855 5.67178 5.69581 5.74861 5.77864 5.84946 5.90495 5.97107 6.04217 6.05289 6.17598 6.26495 6.29639 6.47257 6.49076 6.56547 6.64989 6.71992 6.96699 7.73495 8.02731 8.45303 8.52907 9.25866 9.98863 10.19506 11.44528 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010813 B = 0.008508 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.943875 B = 3290.140462 C = 5049.310292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 C -0.037 4.037 4 C -0.124 4.124 5 C -0.228 4.228 6 C 0.544 3.456 7 O -0.538 6.538 8 N -0.592 5.592 9 C 0.082 3.918 10 C 0.158 3.842 11 H 0.101 0.899 12 C 0.152 3.848 13 N -0.751 5.751 14 C -0.241 4.241 15 H 0.090 0.910 16 C 0.006 3.994 17 N -0.934 5.934 18 Si 0.875 3.125 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.272 1.272 22 C -0.157 4.157 23 C -0.171 4.171 24 C -0.171 4.171 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.692 -7.722 8.608 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 C -0.038 4.038 4 C -0.181 4.181 5 C -0.249 4.249 6 C 0.336 3.664 7 O -0.419 6.419 8 N -0.323 5.323 9 C -0.061 4.061 10 C 0.055 3.945 11 H 0.119 0.881 12 C 0.024 3.976 13 N -0.397 5.397 14 C -0.371 4.371 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.583 5.583 18 Si 0.705 3.295 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.197 1.197 22 C -0.177 4.177 23 C -0.208 4.208 24 C -0.208 4.208 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.197 0.803 40 H 0.069 0.931 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.242 -8.093 8.421 20.005 hybrid contribution -0.250 -0.018 1.173 1.199 sum 15.992 -8.111 9.593 20.336 Atomic orbital electron populations 1.21558 0.94290 1.01595 1.01765 1.21004 0.97118 0.92528 1.03231 1.22539 0.90952 0.95928 0.94424 1.20982 1.02611 1.00070 0.94433 1.22519 1.08160 1.02080 0.92147 1.18528 0.79335 0.84327 0.84244 1.90696 1.40391 1.23845 1.86954 1.47584 1.54419 1.24853 1.05486 1.21740 0.94560 0.85996 1.03825 1.20957 0.93149 0.97795 0.82596 0.88111 1.20914 0.88299 0.94836 0.93580 1.42639 1.25609 1.56104 1.15342 1.19045 1.00563 1.17687 0.99779 0.89231 1.24615 0.97181 0.99348 0.97774 1.69695 1.14324 1.37172 1.37077 0.86653 0.77160 0.79268 0.86384 1.21195 1.21730 1.19743 1.22566 0.98216 0.93760 1.03121 1.22973 1.03006 0.96690 0.98165 1.22810 0.96494 1.04108 0.97436 0.91512 0.92805 0.93880 0.87838 0.92587 0.90328 0.91338 0.91299 0.85540 0.93165 0.90347 0.91317 0.95311 0.94477 0.80310 0.93142 0.87483 0.88648 0.88781 0.89181 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.45 37.16 0.35 -1.67 16 2 C -0.10 -1.39 5.32 -27.88 -0.15 -1.54 16 3 C -0.04 -0.48 5.36 -101.17 -0.54 -1.02 16 4 C -0.12 -1.21 10.05 36.01 0.36 -0.85 16 5 C -0.23 -3.27 8.85 -37.80 -0.33 -3.61 16 6 C 0.54 9.32 7.17 -12.66 -0.09 9.23 16 7 O -0.54 -10.48 11.00 5.27 0.06 -10.42 16 8 N -0.59 -9.44 2.13 -175.33 -0.37 -9.81 16 9 C 0.08 1.07 9.56 59.85 0.57 1.64 16 10 C 0.16 2.62 2.38 -67.93 -0.16 2.46 16 11 H 0.10 1.90 6.65 -51.93 -0.35 1.55 16 12 C 0.15 2.99 5.48 -4.04 -0.02 2.97 16 13 N -0.75 -18.62 5.24 -59.91 -0.31 -18.94 16 14 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 15 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -30.02 13.97 55.49 0.78 -29.24 16 18 Si 0.88 23.43 27.74 -169.99 -4.71 18.71 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 21 H -0.27 -7.23 6.52 56.52 0.37 -6.86 16 22 C -0.16 -2.03 4.83 -90.61 -0.44 -2.47 16 23 C -0.17 -1.99 10.18 -26.69 -0.27 -2.26 16 24 C -0.17 -1.99 10.13 -26.69 -0.27 -2.26 16 25 H 0.07 1.25 6.91 -51.93 -0.36 0.89 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 1.62 5.56 -51.93 -0.29 1.33 16 29 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 32 H 0.07 0.57 8.06 -51.93 -0.42 0.16 16 33 H 0.13 1.53 6.15 -52.49 -0.32 1.21 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 36 H 0.07 0.85 6.02 -51.93 -0.31 0.54 16 37 H 0.03 0.55 6.88 -51.93 -0.36 0.20 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.36 9.26 4.93 -40.82 -0.20 9.06 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 41 H 0.11 1.29 8.11 -51.93 -0.42 0.86 16 42 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -33.55 357.03 -8.03 -41.58 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -7.59 Total: 9.18 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.25 Total: -6.44 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.09 Total: -57.99 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.06 Total: -10.42 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.71 Total: 18.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.55 -8.03 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485809917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.934 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds