Wall clock time and date at job start Fri Apr 10 2020 17:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47261 * 2 1 4 4 C 1.50702 * 120.00197 * 87.55622 * 3 2 1 5 5 C 1.32991 * 120.00239 * 267.55500 * 3 2 1 6 6 C 1.47110 * 119.99933 * 7.58281 * 5 3 2 7 7 O 1.21611 * 119.99433 * 6.24764 * 6 5 3 8 8 N 1.34774 * 120.00074 * 186.53204 * 6 5 3 9 9 C 1.46497 * 119.99857 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99817 * 180.02562 * 8 6 5 11 11 H 1.08996 * 109.47162 * 359.97438 * 10 8 6 12 12 C 1.52996 * 109.47462 * 119.99425 * 10 8 6 13 13 N 1.46500 * 109.47099 * 304.99971 * 12 10 8 14 14 C 1.36939 * 120.00047 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00038 * 179.97438 * 14 13 12 17 17 N 1.31611 * 119.99888 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99904 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46737 * 89.99984 * 18 16 14 20 20 H 1.48498 * 109.47259 * 210.00157 * 18 16 14 21 21 H 1.48494 * 109.47269 * 330.00442 * 18 16 14 22 22 C 1.53007 * 109.46680 * 239.99508 * 10 8 6 23 23 C 1.53001 * 117.49715 * 128.74702 * 22 10 8 24 24 C 1.53002 * 117.49859 * 60.08643 * 22 10 8 25 25 H 1.09002 * 109.46843 * 59.99743 * 1 2 3 26 26 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47299 * 300.00265 * 1 2 3 28 28 H 1.08997 * 109.46873 * 239.99866 * 2 1 3 29 29 H 1.09002 * 109.46843 * 120.00257 * 2 1 3 30 30 H 1.09004 * 109.47038 * 270.00104 * 4 3 2 31 31 H 1.09004 * 109.47187 * 29.99499 * 4 3 2 32 32 H 1.08997 * 109.47379 * 149.99834 * 4 3 2 33 33 H 1.08002 * 120.00478 * 187.58290 * 5 3 2 34 34 H 1.09005 * 109.46907 * 90.00767 * 9 8 6 35 35 H 1.09002 * 109.46864 * 210.00355 * 9 8 6 36 36 H 1.08996 * 109.47429 * 330.00701 * 9 8 6 37 37 H 1.09001 * 109.46839 * 64.99897 * 12 10 8 38 38 H 1.09001 * 109.47169 * 184.99951 * 12 10 8 39 39 H 0.96998 * 119.99709 * 359.97438 * 13 12 10 40 40 H 0.97002 * 120.00228 * 180.02562 * 17 16 14 41 41 H 1.08996 * 115.54781 * 274.41400 * 22 10 8 42 42 H 1.08997 * 117.49967 * 359.97438 * 23 22 10 43 43 H 1.08993 * 117.49743 * 145.02003 * 23 22 10 44 44 H 1.08997 * 117.49362 * 214.97855 * 24 22 10 45 45 H 1.08992 * 117.49801 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2311 2.1498 1.3039 5 6 2.3004 2.0313 -1.1507 6 6 1.9511 1.3849 -2.4251 7 8 1.3166 0.3475 -2.4268 8 7 2.3391 1.9395 -3.5906 9 6 3.1083 3.1863 -3.5883 10 6 1.9907 1.2960 -4.8598 11 1 1.4220 0.3874 -4.6624 12 6 1.1461 2.2539 -5.7023 13 7 -0.0195 2.6873 -4.9279 14 6 -0.9248 3.5537 -5.4801 15 1 -0.7797 3.9172 -6.4867 16 6 -2.0296 3.9639 -4.7464 17 7 -2.8999 4.7962 -5.2774 18 14 -2.2816 3.3334 -3.0062 19 1 -1.6149 4.2498 -2.0464 20 1 -3.7348 3.2747 -2.7066 21 1 -1.6953 1.9748 -2.8821 22 6 3.2705 0.9413 -5.6198 23 6 3.4153 -0.4947 -6.1277 24 6 4.2537 -0.0141 -4.9405 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3110 2.6678 1.5745 31 1 2.4881 1.4340 2.0848 32 1 3.0378 2.8747 1.1956 33 1 2.7745 3.0017 -1.1495 34 1 4.1732 2.9561 -3.5534 35 1 2.8881 3.7507 -4.4944 36 1 2.8360 3.7796 -2.7154 37 1 1.7451 3.1229 -5.9745 38 1 0.8126 1.7448 -6.6066 39 1 -0.1500 2.3605 -4.0240 40 1 -3.6717 5.0832 -4.7646 41 1 3.6871 1.7377 -6.2364 42 1 2.5993 -1.1867 -5.9201 43 1 3.9277 -0.6429 -7.0782 44 1 5.3172 0.1536 -5.1106 45 1 3.9891 -0.3895 -3.9521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485809917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:43 Heat of formation + Delta-G solvation = 3.414111 kcal Electronic energy + Delta-G solvation = -23437.593838 eV Core-core repulsion = 20263.219248 eV Total energy + Delta-G solvation = -3174.374590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34447 -39.06554 -36.95079 -36.59460 -35.69055 -33.58107 -31.90150 -30.60617 -28.69053 -27.70916 -25.84207 -24.67776 -23.39347 -23.02847 -22.16369 -20.66163 -19.65894 -19.03942 -18.37387 -17.14441 -16.71793 -16.66150 -15.98817 -15.83738 -15.47967 -15.12233 -14.84045 -14.81310 -14.52868 -14.06418 -13.90882 -13.76444 -13.62572 -13.56226 -13.18456 -12.97897 -12.95807 -12.81087 -12.69407 -12.41821 -12.27683 -12.11743 -11.99272 -11.89672 -11.69698 -11.24231 -11.14173 -11.06865 -10.36373 -10.09608 -9.44457 -9.33966 -8.09453 -5.40154 0.41474 1.25353 1.29530 1.38000 2.04569 2.32483 2.38897 3.00478 3.22054 3.37004 3.71714 3.80216 3.87578 3.98568 4.09722 4.12213 4.26635 4.33608 4.42613 4.46109 4.47760 4.52979 4.63257 4.65643 4.76197 4.78040 4.80181 4.83129 4.91543 4.99204 5.01624 5.04188 5.09910 5.22810 5.26380 5.28721 5.32727 5.50915 5.62274 5.69862 5.74842 6.15401 6.53581 7.01256 7.28886 7.79003 7.97195 9.12075 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010813 B = 0.008508 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.943875 B = 3290.140462 C = 5049.310292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.028 4.028 4 C -0.122 4.122 5 C -0.250 4.250 6 C 0.530 3.470 7 O -0.574 6.574 8 N -0.596 5.596 9 C 0.078 3.922 10 C 0.169 3.831 11 H 0.071 0.929 12 C 0.149 3.851 13 N -0.755 5.755 14 C -0.226 4.226 15 H 0.066 0.934 16 C -0.053 4.053 17 N -0.977 5.977 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.163 4.163 23 C -0.168 4.168 24 C -0.156 4.156 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.361 0.639 40 H 0.258 0.742 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.202 -7.895 10.408 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C -0.030 4.030 4 C -0.179 4.179 5 C -0.271 4.271 6 C 0.323 3.677 7 O -0.457 6.457 8 N -0.327 5.327 9 C -0.064 4.064 10 C 0.065 3.935 11 H 0.089 0.911 12 C 0.022 3.978 13 N -0.400 5.400 14 C -0.357 4.357 15 H 0.084 0.916 16 C -0.245 4.245 17 N -0.628 5.628 18 Si 0.769 3.231 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.182 4.182 23 C -0.205 4.205 24 C -0.193 4.193 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.194 0.806 40 H 0.067 0.933 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.809 -8.267 10.211 22.943 hybrid contribution -1.004 -0.024 0.545 1.142 sum 17.805 -8.290 10.756 22.392 Atomic orbital electron populations 1.21509 0.95396 1.01590 1.00427 1.20969 0.96087 0.93457 1.03464 1.22907 0.88899 0.95466 0.95731 1.21058 1.03386 1.00626 0.92781 1.22638 1.10065 1.03233 0.91120 1.19134 0.78944 0.84187 0.85429 1.90685 1.42008 1.25451 1.87539 1.47720 1.54375 1.25645 1.04916 1.21920 0.95974 0.84775 1.03685 1.20666 0.94261 0.95536 0.83040 0.91090 1.21117 0.87221 0.95953 0.93530 1.42694 1.26391 1.55378 1.15536 1.19073 1.00886 1.17064 0.98673 0.91597 1.25262 0.97428 1.00317 1.01506 1.69833 1.15178 1.39100 1.38671 0.85633 0.76783 0.78444 0.82282 1.19895 1.21833 1.20281 1.22432 0.97017 0.94991 1.03791 1.23063 1.02790 0.95282 0.99415 1.22799 0.97507 1.02541 0.96425 0.95739 0.92303 0.92037 0.90242 0.89671 0.90048 0.89357 0.89508 0.83315 0.90079 0.91248 0.90581 0.93922 0.94883 0.80635 0.93274 0.85828 0.90069 0.86376 0.86552 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.45 71.98 0.68 -3.20 16 2 C -0.10 -2.68 5.32 29.85 0.16 -2.52 16 3 C -0.03 -0.67 5.36 -17.62 -0.09 -0.77 16 4 C -0.12 -1.92 10.05 71.24 0.72 -1.21 16 5 C -0.25 -6.77 8.85 23.43 0.21 -6.56 16 6 C 0.53 18.06 7.17 86.57 0.62 18.68 16 7 O -0.57 -23.01 11.00 -4.07 -0.04 -23.06 16 8 N -0.60 -18.58 2.13 -826.87 -1.76 -20.34 16 9 C 0.08 1.89 9.56 127.77 1.22 3.12 16 10 C 0.17 5.57 2.38 44.99 0.11 5.68 16 11 H 0.07 2.78 6.65 -2.39 -0.02 2.76 16 12 C 0.15 5.87 5.48 86.38 0.47 6.35 16 13 N -0.75 -37.81 5.24 -343.45 -1.80 -39.61 16 14 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 15 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 16 C -0.05 -3.27 5.50 84.86 0.47 -2.80 16 17 N -0.98 -63.97 13.97 21.65 0.30 -63.66 16 18 Si 0.94 49.55 27.74 68.60 1.90 51.45 16 19 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 21 H -0.28 -14.68 6.52 99.48 0.65 -14.03 16 22 C -0.16 -3.96 4.83 -10.79 -0.05 -4.01 16 23 C -0.17 -3.65 10.18 30.62 0.31 -3.34 16 24 C -0.16 -3.29 10.13 30.62 0.31 -2.98 16 25 H 0.02 0.91 6.91 -2.39 -0.02 0.89 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 2.51 5.56 -2.39 -0.01 2.49 16 29 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.09 1.06 8.06 -2.38 -0.02 1.04 16 32 H 0.09 1.08 8.06 -2.39 -0.02 1.07 16 33 H 0.15 3.21 6.15 -2.91 -0.02 3.19 16 34 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 1.79 6.53 -2.39 -0.02 1.78 16 36 H 0.08 1.72 6.02 -2.39 -0.01 1.70 16 37 H 0.04 1.60 6.88 -2.39 -0.02 1.58 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.36 18.54 4.93 -92.71 -0.46 18.09 16 40 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 41 H 0.12 2.63 8.11 -2.39 -0.02 2.61 16 42 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 43 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.81 357.03 5.06 -69.75 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.45 Total: 31.50 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 6.01 Total: -6.04 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -3.25 Total: -123.61 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.04 Total: -23.06 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.90 Total: 51.45 kcal Total: -74.81 5.06 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485809917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.167 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds