Wall clock time and date at job start Fri Apr 10 2020 17:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47135 * 2 1 4 4 C 1.50704 * 120.00081 * 275.00172 * 3 2 1 5 5 C 1.32996 * 119.99794 * 95.00429 * 3 2 1 6 6 C 1.47103 * 119.99859 * 174.29812 * 5 3 2 7 7 O 1.21611 * 119.99718 * 5.05442 * 6 5 3 8 8 N 1.34772 * 119.99770 * 185.05615 * 6 5 3 9 9 C 1.46494 * 120.00222 * 359.97438 * 8 6 5 10 10 C 1.46505 * 119.99676 * 179.97438 * 8 6 5 11 11 H 1.08997 * 109.46885 * 174.40310 * 10 8 6 12 12 C 1.52994 * 109.47429 * 54.40020 * 10 8 6 13 13 N 1.46503 * 109.47062 * 54.99478 * 12 10 8 14 14 C 1.36939 * 119.99816 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00136 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99974 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99669 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47122 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47223 * 120.00068 * 18 16 14 21 21 H 1.48502 * 109.47055 * 240.00053 * 18 16 14 22 22 C 1.53004 * 109.47094 * 294.39603 * 10 8 6 23 23 C 1.53005 * 117.49597 * 2.55979 * 22 10 8 24 24 C 1.53000 * 117.50201 * 293.90004 * 22 10 8 25 25 H 1.09004 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46530 * 299.99673 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99624 * 1 2 3 28 28 H 1.09001 * 109.46530 * 240.00327 * 2 1 3 29 29 H 1.08998 * 109.47043 * 120.00376 * 2 1 3 30 30 H 1.08996 * 109.47131 * 244.67806 * 4 3 2 31 31 H 1.08997 * 109.46998 * 4.68133 * 4 3 2 32 32 H 1.08997 * 109.46651 * 124.67532 * 4 3 2 33 33 H 1.07994 * 120.00007 * 354.29566 * 5 3 2 34 34 H 1.09006 * 109.46956 * 84.82679 * 9 8 6 35 35 H 1.08999 * 109.47326 * 324.82475 * 9 8 6 36 36 H 1.08996 * 109.47227 * 204.82349 * 9 8 6 37 37 H 1.08997 * 109.47369 * 174.99860 * 12 10 8 38 38 H 1.09007 * 109.47061 * 295.00158 * 12 10 8 39 39 H 0.96999 * 119.99890 * 0.02562 * 13 12 10 40 40 H 0.96997 * 119.99474 * 180.02562 * 17 16 14 41 41 H 1.08999 * 115.54702 * 148.22444 * 22 10 8 42 42 H 1.08997 * 117.49948 * 359.97438 * 23 22 10 43 43 H 1.09004 * 117.49565 * 145.01862 * 23 22 10 44 44 H 1.08997 * 117.49908 * 214.98011 * 24 22 10 45 45 H 1.09005 * 117.49351 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1692 -1.3002 5 6 2.3488 2.0142 1.1474 6 6 2.9564 3.3539 1.1395 7 8 3.0852 3.9569 0.0914 8 7 3.3705 3.9128 2.2939 9 6 3.2149 3.1865 3.5566 10 6 3.9762 5.2467 2.2859 11 1 4.1545 5.5708 3.3112 12 6 3.0304 6.2322 1.5967 13 7 1.7198 6.1896 2.2501 14 6 0.7050 6.9925 1.8022 15 1 0.8706 7.6569 0.9670 16 6 -0.5366 6.9525 2.4216 17 7 -0.7383 6.1431 3.4398 18 14 -1.9212 8.0472 1.8101 19 1 -1.4413 8.8572 0.6617 20 1 -3.0644 7.2042 1.3773 21 1 -2.3586 8.9502 2.9049 22 6 5.3043 5.1993 1.5278 23 6 5.7100 3.8659 0.8964 24 6 6.4392 4.3769 2.1416 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.2284 2.3936 -1.4757 31 1 1.7945 1.5561 -2.1164 32 1 1.6100 3.0991 -1.2486 33 1 2.1595 1.5126 2.0849 34 1 4.0621 2.5149 3.6962 35 1 2.2921 2.6068 3.5310 36 1 3.1747 3.8972 4.3820 37 1 3.4398 7.2398 1.6690 38 1 2.9221 5.9584 0.5472 39 1 1.5712 5.5931 3.0005 40 1 -1.6060 6.1149 3.8724 41 1 5.5745 6.1112 0.9954 42 1 5.0310 3.0225 1.0215 43 1 6.2476 3.9007 -0.0512 44 1 7.4561 4.7477 2.0126 45 1 6.2397 3.8701 3.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485809922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:51 Heat of formation + Delta-G solvation = 8.238205 kcal Electronic energy + Delta-G solvation = -23459.719728 eV Core-core repulsion = 20285.554326 eV Total energy + Delta-G solvation = -3174.165401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50682 -38.58396 -36.77671 -36.46981 -35.55445 -33.35713 -31.75385 -30.26055 -28.64077 -27.17489 -26.03357 -24.87596 -23.55608 -23.01835 -22.22142 -20.35660 -19.22552 -18.87385 -17.81123 -17.15253 -16.93907 -16.48620 -15.83034 -15.47455 -15.31028 -15.24064 -14.81447 -14.61343 -14.23267 -14.21961 -13.83298 -13.51277 -13.39502 -13.32742 -13.15127 -12.99412 -12.82673 -12.70436 -12.46249 -12.23378 -12.19492 -12.15474 -12.05137 -11.81025 -11.74406 -11.17154 -11.02140 -10.92136 -10.14527 -10.00305 -9.33798 -8.91752 -7.95384 -5.21293 0.54314 1.42528 1.43528 1.53648 2.21474 2.53308 2.53996 2.97896 3.37750 3.65815 3.72357 3.92811 4.04694 4.04966 4.20898 4.23157 4.34098 4.36719 4.43710 4.46581 4.59349 4.67205 4.73430 4.74562 4.78862 4.81019 4.89008 4.91242 4.94700 5.03981 5.07197 5.07617 5.15663 5.24758 5.30014 5.32510 5.36715 5.46304 5.62306 5.67227 5.87272 6.27544 6.69100 7.34076 7.51051 8.09809 8.37582 9.27992 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.006893 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.534280 B = 4061.119959 C = 5573.923810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.033 4.033 4 C -0.106 4.106 5 C -0.246 4.246 6 C 0.544 3.456 7 O -0.557 6.557 8 N -0.605 5.605 9 C 0.079 3.921 10 C 0.184 3.816 11 H 0.092 0.908 12 C 0.137 3.863 13 N -0.732 5.732 14 C -0.239 4.239 15 H 0.062 0.938 16 C -0.072 4.072 17 N -0.963 5.963 18 Si 0.968 3.032 19 H -0.273 1.273 20 H -0.293 1.293 21 H -0.288 1.288 22 C -0.167 4.167 23 C -0.162 4.162 24 C -0.153 4.153 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.017 0.983 38 H 0.031 0.969 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -14.157 -2.557 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.035 4.035 4 C -0.162 4.162 5 C -0.266 4.266 6 C 0.337 3.663 7 O -0.438 6.438 8 N -0.337 5.337 9 C -0.063 4.063 10 C 0.080 3.920 11 H 0.110 0.890 12 C 0.010 3.990 13 N -0.374 5.374 14 C -0.371 4.371 15 H 0.080 0.920 16 C -0.264 4.264 17 N -0.615 5.615 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.215 1.215 22 C -0.187 4.187 23 C -0.199 4.199 24 C -0.190 4.190 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.049 0.951 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.561 -13.697 -3.190 18.205 hybrid contribution -1.193 0.875 0.141 1.486 sum 10.369 -12.821 -3.050 16.769 Atomic orbital electron populations 1.21729 0.94356 1.02842 1.01579 1.20794 0.96366 0.90607 1.04647 1.22808 0.89667 0.96362 0.94651 1.20864 1.02312 0.98715 0.94321 1.22666 1.08151 0.95797 0.99994 1.18686 0.77589 0.86813 0.83174 1.90706 1.56876 1.64417 1.31794 1.47681 1.61170 1.17130 1.07710 1.21953 1.02328 0.97320 0.84745 1.20606 0.90369 0.81811 0.99231 0.89040 1.21168 0.85563 0.95479 0.96765 1.42292 1.08022 1.48727 1.38389 1.19556 0.91550 1.14943 1.11086 0.91984 1.25435 0.99842 1.01916 0.99200 1.69799 1.23330 1.42569 1.25753 0.85145 0.79428 0.78170 0.77483 1.19829 1.22011 1.21463 1.22445 0.94786 0.96755 1.04671 1.22852 1.02931 0.97008 0.97155 1.23050 0.96352 1.02417 0.97188 0.89952 0.93935 0.93159 0.88684 0.89297 0.91150 0.91043 0.93393 0.84142 0.90248 0.91332 0.91057 0.96502 0.95142 0.79241 0.94073 0.87810 0.89931 0.89494 0.87272 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.90 71.98 0.71 -2.20 16 2 C -0.09 -1.64 6.03 29.85 0.18 -1.46 16 3 C -0.03 -0.90 5.36 -17.61 -0.09 -0.99 16 4 C -0.11 -3.15 8.34 71.24 0.59 -2.56 16 5 C -0.25 -7.44 8.82 23.43 0.21 -7.24 16 6 C 0.54 19.89 4.72 86.57 0.41 20.30 16 7 O -0.56 -23.50 9.28 -4.07 -0.04 -23.54 16 8 N -0.60 -20.16 1.67 -826.88 -1.38 -21.55 16 9 C 0.08 2.06 10.05 127.77 1.28 3.35 16 10 C 0.18 6.46 2.56 44.99 0.11 6.57 16 11 H 0.09 3.03 7.70 -2.39 -0.02 3.01 16 12 C 0.14 6.28 5.31 86.38 0.46 6.74 16 13 N -0.73 -39.68 5.43 -343.45 -1.87 -41.55 16 14 C -0.24 -14.35 9.99 84.03 0.84 -13.51 16 15 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 16 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 17 N -0.96 -59.87 13.06 21.65 0.28 -59.59 16 18 Si 0.97 48.39 29.55 68.60 2.03 50.42 16 19 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 22 C -0.17 -4.97 5.33 -10.79 -0.06 -5.03 16 23 C -0.16 -4.50 8.45 30.62 0.26 -4.25 16 24 C -0.15 -3.45 10.24 30.62 0.31 -3.13 16 25 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.40 8.03 -2.39 -0.02 1.38 16 30 H 0.07 2.20 7.32 -2.39 -0.02 2.18 16 31 H 0.07 1.68 8.01 -2.39 -0.02 1.67 16 32 H 0.05 1.81 7.14 -2.39 -0.02 1.80 16 33 H 0.14 3.60 6.28 -2.91 -0.02 3.58 16 34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 1.81 6.34 -2.39 -0.02 1.79 16 36 H 0.07 1.87 7.78 -2.39 -0.02 1.85 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.03 1.56 5.97 -2.38 -0.01 1.55 16 39 H 0.38 20.93 7.33 -92.71 -0.68 20.25 16 40 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.10 3.13 8.07 -2.39 -0.02 3.11 16 42 H 0.08 2.50 5.15 -2.39 -0.01 2.49 16 43 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -71.88 355.43 4.99 -66.89 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.28 Total: 36.14 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.69 Total: -7.23 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -2.97 Total: -122.68 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.04 Total: -23.54 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -71.88 4.99 -66.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485809922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.124 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds