Wall clock time and date at job start Fri Apr 10 2020 17:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47375 * 2 1 4 4 C 1.32995 * 120.00446 * 183.76764 * 3 2 1 5 5 C 1.50697 * 120.00253 * 184.34534 * 4 3 2 6 6 C 1.47107 * 119.99695 * 4.34693 * 4 3 2 7 7 O 1.21614 * 120.00191 * 353.94673 * 6 4 3 8 8 N 1.34779 * 119.99770 * 173.93681 * 6 4 3 9 9 C 1.46504 * 119.99657 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.46803 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.43505 * 303.91001 * 10 9 8 12 12 C 1.54269 * 110.48599 * 66.45619 * 10 9 8 13 13 C 1.53871 * 106.59718 * 142.28578 * 12 10 9 14 14 C 1.54271 * 106.59895 * 359.97438 * 13 12 10 15 15 H 1.09005 * 110.48376 * 95.20463 * 14 13 12 16 16 N 1.46502 * 110.48620 * 217.70778 * 14 13 12 17 17 C 1.36937 * 120.00223 * 273.54962 * 16 14 13 18 18 H 1.07998 * 119.99694 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99805 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00080 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00356 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47186 * 89.99430 * 21 19 17 23 23 H 1.48500 * 109.47351 * 210.00226 * 21 19 17 24 24 H 1.48507 * 109.46875 * 329.99924 * 21 19 17 25 25 C 1.54889 * 110.48140 * 181.23067 * 10 9 8 26 26 H 1.09004 * 109.46903 * 300.00052 * 1 2 3 27 27 H 1.09005 * 109.47184 * 59.99834 * 1 2 3 28 28 H 1.09000 * 109.47572 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47552 * 239.99902 * 2 1 3 30 30 H 1.09005 * 109.47184 * 120.00166 * 2 1 3 31 31 H 1.07998 * 120.00174 * 3.77083 * 3 2 1 32 32 H 1.09001 * 109.47412 * 270.00316 * 5 4 3 33 33 H 1.08994 * 109.47188 * 30.00337 * 5 4 3 34 34 H 1.09007 * 109.46888 * 150.00244 * 5 4 3 35 35 H 0.96997 * 119.99881 * 0.02562 * 8 6 4 36 36 H 1.08995 * 109.47113 * 60.00283 * 9 8 6 37 37 H 1.08997 * 109.47142 * 300.00365 * 9 8 6 38 38 H 1.09001 * 110.03053 * 23.00112 * 12 10 9 39 39 H 1.09000 * 110.07069 * 261.59218 * 12 10 9 40 40 H 1.08999 * 110.03146 * 240.71286 * 13 12 10 41 41 H 1.09000 * 110.07448 * 119.30338 * 13 12 10 42 42 H 0.97000 * 119.99594 * 93.81941 * 16 14 13 43 43 H 0.96998 * 120.00334 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.75812 * 85.06602 * 25 10 9 45 45 H 1.09003 * 110.76018 * 321.69244 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 3.3375 1.6646 -0.0757 5 6 3.8467 3.0796 0.0229 6 6 4.2842 0.5531 -0.2556 7 8 3.8862 -0.5956 -0.2249 8 7 5.5926 0.8079 -0.4547 9 6 6.5353 -0.2990 -0.6345 10 6 7.9447 0.2597 -0.8403 11 1 7.9603 0.9528 -1.6814 12 6 8.4418 0.9568 0.4430 13 6 9.9412 0.6337 0.5661 14 6 10.3027 -0.2490 -0.6464 15 1 10.7036 0.3607 -1.4561 16 7 11.2664 -1.2824 -0.2591 17 6 12.6079 -1.0084 -0.2759 18 1 12.9556 -0.0306 -0.5751 19 6 13.5209 -1.9873 0.0916 20 7 14.8103 -1.7242 0.0749 21 14 12.9194 -3.6782 0.6097 22 1 12.8310 -4.5590 -0.5826 23 1 13.8706 -4.2636 1.5883 24 1 11.5781 -3.5562 1.2354 25 6 8.9568 -0.8913 -1.0638 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.3325 2.2410 0.0615 32 1 3.8918 3.5198 -0.9733 33 1 3.1734 3.6652 0.6487 34 1 4.8433 3.0771 0.4645 35 1 5.9101 1.7242 -0.4790 36 1 6.2455 -0.8851 -1.5066 37 1 6.5225 -0.9346 0.2509 38 1 7.9044 0.5713 1.3094 39 1 8.2974 2.0343 0.3633 40 1 10.1314 0.0914 1.4923 41 1 10.5251 1.5539 0.5458 42 1 10.9542 -2.1618 0.0055 43 1 15.4483 -2.4081 0.3320 44 1 8.9789 -1.1880 -2.1123 45 1 8.7209 -1.7426 -0.4252 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488898720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:26 Heat of formation + Delta-G solvation = -54.760483 kcal Electronic energy + Delta-G solvation = -21639.987383 eV Core-core repulsion = 18463.090153 eV Total energy + Delta-G solvation = -3176.897229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04812 -39.55688 -36.76293 -36.12500 -35.11179 -33.38648 -32.75133 -30.35601 -29.03864 -27.76006 -26.09826 -24.58594 -23.69382 -22.53169 -21.66391 -20.64925 -20.08218 -19.54235 -17.37929 -17.28624 -16.73709 -16.63152 -16.20503 -15.94959 -15.21027 -14.97606 -14.75582 -14.69698 -14.38828 -14.25412 -14.08359 -13.78736 -13.63967 -13.34491 -13.20896 -13.15481 -12.68836 -12.56645 -12.24875 -12.14166 -12.12428 -11.95923 -11.90632 -11.84444 -11.72637 -11.55207 -11.21907 -10.96214 -10.57263 -10.20935 -9.74522 -9.29095 -8.02612 -5.35088 0.46553 1.37224 1.39759 1.47029 2.25411 2.32067 2.47813 3.28072 3.54779 3.63917 3.75164 3.81270 3.92162 4.12504 4.30465 4.35060 4.40539 4.44780 4.50057 4.58962 4.63962 4.64508 4.72398 4.79099 4.82145 4.87699 4.90775 5.04319 5.09046 5.12880 5.20273 5.21601 5.22336 5.36169 5.36839 5.44937 5.50502 5.56334 5.57548 5.70835 5.78856 6.22818 6.62757 7.08487 7.29037 7.86739 8.04323 9.19013 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034821 B = 0.002828 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.920321 B = 9898.796318 C =10456.897920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.063 4.063 4 C -0.206 4.206 5 C -0.112 4.112 6 C 0.536 3.464 7 O -0.580 6.580 8 N -0.713 5.713 9 C 0.135 3.865 10 C -0.086 4.086 11 H 0.101 0.899 12 C -0.106 4.106 13 C -0.140 4.140 14 C 0.167 3.833 15 H 0.051 0.949 16 N -0.751 5.751 17 C -0.226 4.226 18 H 0.057 0.943 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.254 1.254 25 C -0.117 4.117 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.413 0.587 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.076 0.924 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.790 10.640 -0.939 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.209 4.209 5 C -0.169 4.169 6 C 0.327 3.673 7 O -0.462 6.462 8 N -0.366 5.366 9 C 0.011 3.989 10 C -0.105 4.105 11 H 0.119 0.881 12 C -0.144 4.144 13 C -0.181 4.181 14 C 0.059 3.941 15 H 0.069 0.931 16 N -0.394 5.394 17 C -0.357 4.357 18 H 0.075 0.925 19 C -0.259 4.259 20 N -0.636 5.636 21 Si 0.782 3.218 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.179 1.179 25 C -0.156 4.156 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.197 0.803 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -29.837 9.961 -0.955 31.471 hybrid contribution 0.871 -0.948 0.427 1.356 sum -28.966 9.014 -0.528 30.341 Atomic orbital electron populations 1.21868 0.94288 1.02099 1.02555 1.20732 0.96160 0.94195 1.02195 1.23967 0.94953 0.98814 0.90508 1.21644 0.94144 0.95929 1.09173 1.20818 1.02198 0.90313 1.03550 1.19015 0.82956 0.89234 0.76110 1.90774 1.78499 1.24208 1.52755 1.45868 1.06861 1.10929 1.72895 1.21261 0.87531 0.89088 1.00995 1.22044 0.91788 0.97376 0.99297 0.88092 1.22121 0.94030 1.01135 0.97084 1.22728 0.96477 0.99484 0.99375 1.21305 0.88488 0.89576 0.94687 0.93132 1.42835 1.02336 1.12472 1.81765 1.19050 0.82810 0.97861 1.36023 0.92482 1.25501 0.95204 1.02295 1.02867 1.69879 1.01531 1.35255 1.56892 0.85420 0.78012 0.80412 0.77992 1.20434 1.22404 1.17902 1.22648 0.93395 0.97773 1.01753 0.91622 0.91789 0.92835 0.91667 0.91864 0.82753 0.89926 0.89681 0.91072 0.74901 0.92011 0.92803 0.91951 0.89700 0.93801 0.93175 0.80271 0.93438 0.90572 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.85 71.98 0.71 -1.15 16 2 C -0.10 -1.73 4.53 29.85 0.14 -1.59 16 3 C -0.06 -0.88 9.25 24.52 0.23 -0.65 16 4 C -0.21 -3.16 6.00 -18.70 -0.11 -3.27 16 5 C -0.11 -0.93 9.49 71.23 0.68 -0.26 16 6 C 0.54 11.83 7.70 86.57 0.67 12.49 16 7 O -0.58 -17.23 13.11 -4.08 -0.05 -17.28 16 8 N -0.71 -12.92 5.32 -466.70 -2.48 -15.40 16 9 C 0.14 2.87 4.99 86.38 0.43 3.30 16 10 C -0.09 -1.78 2.93 -9.72 -0.03 -1.81 16 11 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 12 C -0.11 -2.34 6.05 31.32 0.19 -2.15 16 13 C -0.14 -4.53 6.54 31.32 0.20 -4.32 16 14 C 0.17 6.09 3.50 46.06 0.16 6.25 16 15 H 0.05 1.93 8.11 -2.38 -0.02 1.91 16 16 N -0.75 -35.07 4.96 -317.89 -1.58 -36.64 16 17 C -0.23 -12.96 10.45 84.03 0.88 -12.08 16 18 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 20 N -0.98 -63.78 13.97 21.65 0.30 -63.48 16 21 Si 0.95 46.30 27.73 68.60 1.90 48.21 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.25 -11.24 6.52 99.48 0.65 -10.59 16 25 C -0.12 -3.24 5.92 31.88 0.19 -3.05 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 1.50 6.87 -2.39 -0.02 1.48 16 30 H 0.06 1.41 7.55 -2.38 -0.02 1.39 16 31 H 0.16 1.16 7.99 -2.91 -0.02 1.14 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.48 8.07 -2.39 -0.02 0.46 16 34 H 0.07 0.53 6.96 -2.38 -0.02 0.52 16 35 H 0.41 5.18 6.58 -92.71 -0.61 4.57 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.06 1.39 7.77 -2.39 -0.02 1.37 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.36 16.45 5.59 -92.71 -0.52 15.94 16 43 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 Total: -1.00 -73.34 357.68 2.66 -70.69 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.22 Total: 25.77 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 4.79 Total: -11.86 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -3.76 Total: -115.52 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.05 Total: -17.28 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.21 kcal Total: -73.34 2.66 -70.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488898720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.925 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds