Wall clock time and date at job start Fri Apr 10 2020 17:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46933 * 2 1 4 4 C 1.32984 * 120.00514 * 94.99602 * 3 2 1 5 5 C 1.47107 * 120.00152 * 172.05543 * 4 3 2 6 6 O 1.21611 * 119.99801 * 353.62391 * 5 4 3 7 7 N 1.34773 * 120.00211 * 173.62287 * 5 4 3 8 8 C 1.47029 * 125.64799 * 0.03865 * 7 5 4 9 9 C 1.54318 * 107.27211 * 178.90401 * 8 7 5 10 10 C 1.55157 * 102.94354 * 337.81219 * 9 8 7 11 11 H 1.09002 * 111.03463 * 277.40729 * 10 9 8 12 12 C 1.53003 * 111.00745 * 153.57308 * 10 9 8 13 13 N 1.46500 * 109.47434 * 181.34935 * 12 10 9 14 14 C 1.36928 * 120.00130 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00299 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99770 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00238 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47023 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47302 * 299.99506 * 18 16 14 21 21 H 1.48501 * 109.46970 * 59.99918 * 18 16 14 22 22 C 1.47420 * 125.65069 * 180.02562 * 7 5 4 23 23 C 1.50705 * 119.99215 * 274.99741 * 3 2 1 24 24 C 1.53002 * 109.46962 * 272.75689 * 23 3 2 25 25 H 1.09000 * 109.46498 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47292 * 300.00146 * 1 2 3 27 27 H 1.08994 * 109.47238 * 60.00900 * 1 2 3 28 28 H 1.08994 * 109.47766 * 239.99636 * 2 1 3 29 29 H 1.09008 * 109.47140 * 119.99153 * 2 1 3 30 30 H 1.08000 * 120.00200 * 352.05878 * 4 3 2 31 31 H 1.08998 * 109.88174 * 298.32763 * 8 7 5 32 32 H 1.09002 * 109.87667 * 59.33670 * 8 7 5 33 33 H 1.08996 * 110.72545 * 219.44499 * 9 8 7 34 34 H 1.09004 * 110.71629 * 96.16599 * 9 8 7 35 35 H 1.08997 * 109.46774 * 61.34545 * 12 10 9 36 36 H 1.08998 * 109.46737 * 301.35197 * 12 10 9 37 37 H 0.97003 * 119.99352 * 359.97438 * 13 12 10 38 38 H 0.96996 * 120.00556 * 180.02562 * 17 16 14 39 39 H 1.09008 * 110.36868 * 85.32289 * 22 7 5 40 40 H 1.09002 * 110.36814 * 323.00403 * 22 7 5 41 41 H 1.08998 * 109.47639 * 32.76185 * 23 3 2 42 42 H 1.09008 * 109.46697 * 152.75923 * 23 3 2 43 43 H 1.08994 * 109.47406 * 60.00600 * 24 23 3 44 44 H 1.09010 * 109.46711 * 180.02562 * 24 23 3 45 45 H 1.09004 * 109.47173 * 299.99973 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3485 2.0144 1.1472 5 6 3.0012 3.3328 1.1379 6 8 3.3564 3.8279 0.0855 7 7 3.2053 3.9919 2.2956 8 6 2.8283 3.5116 3.6331 9 6 3.2816 4.5813 4.6487 10 6 4.3933 5.3423 3.8791 11 1 5.3458 4.8167 3.9465 12 6 4.5264 6.7796 4.3866 13 7 5.5606 7.4755 3.6170 14 6 5.8576 8.7829 3.8952 15 1 5.3292 9.3012 4.6816 16 6 6.8372 9.4425 3.1656 17 7 7.4809 8.8110 2.2068 18 14 7.2420 11.2263 3.5446 19 1 8.3154 11.6951 2.6318 20 1 6.0288 12.0608 3.3525 21 1 7.7040 11.3409 4.9513 22 6 3.8439 5.3137 2.4307 23 6 2.1762 2.1690 -1.3003 24 6 3.5553 1.8881 -1.9003 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 2.1262 1.5286 2.0858 31 1 1.7476 3.3814 3.6892 32 1 3.3269 2.5648 3.8411 33 1 3.6852 4.1140 5.5469 34 1 2.4578 5.2504 4.8976 35 1 4.8035 6.7684 5.4407 36 1 3.5744 7.2967 4.2667 37 1 6.0354 7.0098 2.9109 38 1 8.1657 9.2717 1.6972 39 1 3.1094 6.1063 2.2876 40 1 4.6586 5.4165 1.7139 41 1 1.4037 1.8410 -1.9957 42 1 2.0703 3.2385 -1.1177 43 1 3.6612 0.8188 -2.0829 44 1 3.6595 2.4297 -2.8407 45 1 4.3279 2.2163 -1.2049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491795579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:48 Heat of formation + Delta-G solvation = -20.028829 kcal Electronic energy + Delta-G solvation = -22036.101880 eV Core-core repulsion = 18860.710728 eV Total energy + Delta-G solvation = -3175.391152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08230 -38.10953 -36.27952 -34.62346 -32.34350 -31.98042 -30.57479 -29.92373 -28.57720 -25.85458 -24.34190 -23.42071 -23.24145 -21.94682 -20.26863 -19.71093 -18.03226 -17.26339 -16.87327 -16.04611 -15.41829 -15.13354 -14.66853 -14.47496 -14.27179 -13.64662 -13.61627 -13.36254 -13.26052 -13.02887 -12.89361 -12.51307 -12.40371 -12.12894 -12.07617 -11.88195 -11.70520 -11.47883 -11.26689 -10.95903 -10.82220 -10.73689 -10.61905 -10.55123 -10.39296 -10.02280 -9.65229 -9.36120 -9.18456 -8.84936 -8.37173 -6.90210 -5.72815 -3.02340 1.32989 3.18519 3.38632 3.46591 3.50591 3.52113 4.41262 4.55658 4.60427 4.70574 4.81646 4.90908 4.99297 5.01287 5.12915 5.23827 5.36885 5.39164 5.52509 5.52548 5.55920 5.60478 5.61261 5.62647 5.67907 5.85093 5.89765 5.91327 6.01205 6.07526 6.13057 6.15575 6.33060 6.34539 6.42237 6.45118 6.52564 6.63487 6.71849 6.85603 7.71766 7.73951 8.38498 8.45361 9.56394 10.13658 10.48093 11.49805 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003283 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.906600 B = 8526.670547 C = 9365.841410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.028 4.028 4 C -0.223 4.223 5 C 0.555 3.445 6 O -0.533 6.533 7 N -0.617 5.617 8 C 0.103 3.897 9 C -0.126 4.126 10 C -0.106 4.106 11 H 0.083 0.917 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.291 1.291 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.117 3.883 23 C -0.105 4.105 24 C -0.131 4.131 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.042 0.958 44 H 0.054 0.946 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.183 -19.694 -0.795 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.030 4.030 4 C -0.244 4.244 5 C 0.347 3.653 6 O -0.412 6.412 7 N -0.350 5.350 8 C -0.020 4.020 9 C -0.164 4.164 10 C -0.126 4.126 11 H 0.102 0.898 12 C 0.037 3.963 13 N -0.377 5.377 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.005 4.005 23 C -0.142 4.142 24 C -0.189 4.189 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.999 -19.297 -1.350 23.878 hybrid contribution 0.401 0.786 0.176 0.900 sum -13.597 -18.511 -1.174 22.998 Atomic orbital electron populations 1.21721 0.94342 1.01915 1.02440 1.20745 0.96556 0.92801 1.03212 1.22536 0.90598 0.94580 0.95285 1.22385 1.06782 0.96542 0.98642 1.18201 0.79713 0.85051 0.82348 1.90746 1.51664 1.69381 1.29455 1.48498 1.59957 1.20572 1.06001 1.22011 0.99565 0.97902 0.82519 1.22653 0.99132 0.97135 0.97485 1.22587 0.98107 0.98112 0.93747 0.89816 1.20583 0.92771 0.88236 0.94703 1.42360 1.42815 1.11144 1.41420 1.19164 1.15789 0.87999 1.14384 0.91229 1.24755 0.99262 0.98341 0.98563 1.69652 1.27718 1.36375 1.24277 0.86263 0.77632 0.84931 0.77310 1.21693 1.21269 1.21293 1.22286 0.97503 0.83140 0.97538 1.21007 0.97799 1.02574 0.92797 1.21526 0.96767 0.99754 1.00813 0.92223 0.92414 0.92334 0.90379 0.90816 0.85960 0.91765 0.91707 0.90055 0.90341 0.95870 0.96082 0.78183 0.93417 0.91206 0.89913 0.92375 0.87802 0.93929 0.92679 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.10 -0.73 6.11 -27.88 -0.17 -0.90 16 3 C -0.03 -0.30 4.61 -101.17 -0.47 -0.76 16 4 C -0.22 -2.60 9.10 -37.81 -0.34 -2.95 16 5 C 0.55 8.58 7.63 -12.66 -0.10 8.48 16 6 O -0.53 -9.88 11.94 5.27 0.06 -9.82 16 7 N -0.62 -9.12 3.33 -171.89 -0.57 -9.70 16 8 C 0.10 1.14 6.08 -3.06 -0.02 1.12 16 9 C -0.13 -1.46 6.42 -24.90 -0.16 -1.62 16 10 C -0.11 -1.69 3.11 -88.46 -0.27 -1.97 16 11 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 12 C 0.17 3.25 5.71 -4.04 -0.02 3.23 16 13 N -0.73 -18.73 5.45 -59.91 -0.33 -19.05 16 14 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 18 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.12 2.02 6.08 -2.52 -0.02 2.01 16 23 C -0.11 -1.25 5.32 -27.88 -0.15 -1.39 16 24 C -0.13 -1.59 9.45 37.16 0.35 -1.24 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.50 8.04 -51.92 -0.42 0.08 16 30 H 0.12 1.14 7.39 -52.49 -0.39 0.75 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 37 H 0.38 10.42 7.53 -40.82 -0.31 10.11 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 39 H 0.07 1.27 8.00 -51.92 -0.42 0.86 16 40 H 0.08 1.67 8.04 -51.93 -0.42 1.25 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.10 1.53 5.57 -51.92 -0.29 1.24 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.06 0.95 6.91 -51.93 -0.36 0.59 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -32.52 361.09 -8.99 -41.51 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.05 Total: 6.04 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.25 Total: -4.06 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.17 Total: -56.81 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.52 -8.99 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491795579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.478 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds