Wall clock time and date at job start Fri Apr 10 2020 17:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46933 * 2 1 4 4 C 1.32984 * 120.00514 * 94.99602 * 3 2 1 5 5 C 1.47107 * 120.00152 * 172.05543 * 4 3 2 6 6 O 1.21611 * 119.99801 * 353.62391 * 5 4 3 7 7 N 1.34773 * 120.00211 * 173.62287 * 5 4 3 8 8 C 1.47029 * 125.64799 * 0.03865 * 7 5 4 9 9 C 1.54318 * 107.27211 * 178.90401 * 8 7 5 10 10 C 1.55157 * 102.94354 * 337.81219 * 9 8 7 11 11 H 1.09002 * 111.03463 * 277.40729 * 10 9 8 12 12 C 1.53003 * 111.00745 * 153.57308 * 10 9 8 13 13 N 1.46500 * 109.47434 * 181.34935 * 12 10 9 14 14 C 1.36928 * 120.00130 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00299 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99770 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00238 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47023 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47302 * 299.99506 * 18 16 14 21 21 H 1.48501 * 109.46970 * 59.99918 * 18 16 14 22 22 C 1.47420 * 125.65069 * 180.02562 * 7 5 4 23 23 C 1.50705 * 119.99215 * 274.99741 * 3 2 1 24 24 C 1.53002 * 109.46962 * 272.75689 * 23 3 2 25 25 H 1.09000 * 109.46498 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47292 * 300.00146 * 1 2 3 27 27 H 1.08994 * 109.47238 * 60.00900 * 1 2 3 28 28 H 1.08994 * 109.47766 * 239.99636 * 2 1 3 29 29 H 1.09008 * 109.47140 * 119.99153 * 2 1 3 30 30 H 1.08000 * 120.00200 * 352.05878 * 4 3 2 31 31 H 1.08998 * 109.88174 * 298.32763 * 8 7 5 32 32 H 1.09002 * 109.87667 * 59.33670 * 8 7 5 33 33 H 1.08996 * 110.72545 * 219.44499 * 9 8 7 34 34 H 1.09004 * 110.71629 * 96.16599 * 9 8 7 35 35 H 1.08997 * 109.46774 * 61.34545 * 12 10 9 36 36 H 1.08998 * 109.46737 * 301.35197 * 12 10 9 37 37 H 0.97003 * 119.99352 * 359.97438 * 13 12 10 38 38 H 0.96996 * 120.00556 * 180.02562 * 17 16 14 39 39 H 1.09008 * 110.36868 * 85.32289 * 22 7 5 40 40 H 1.09002 * 110.36814 * 323.00403 * 22 7 5 41 41 H 1.08998 * 109.47639 * 32.76185 * 23 3 2 42 42 H 1.09008 * 109.46697 * 152.75923 * 23 3 2 43 43 H 1.08994 * 109.47406 * 60.00600 * 24 23 3 44 44 H 1.09010 * 109.46711 * 180.02562 * 24 23 3 45 45 H 1.09004 * 109.47173 * 299.99973 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3485 2.0144 1.1472 5 6 3.0012 3.3328 1.1379 6 8 3.3564 3.8279 0.0855 7 7 3.2053 3.9919 2.2956 8 6 2.8283 3.5116 3.6331 9 6 3.2816 4.5813 4.6487 10 6 4.3933 5.3423 3.8791 11 1 5.3458 4.8167 3.9465 12 6 4.5264 6.7796 4.3866 13 7 5.5606 7.4755 3.6170 14 6 5.8576 8.7829 3.8952 15 1 5.3292 9.3012 4.6816 16 6 6.8372 9.4425 3.1656 17 7 7.4809 8.8110 2.2068 18 14 7.2420 11.2263 3.5446 19 1 8.3154 11.6951 2.6318 20 1 6.0288 12.0608 3.3525 21 1 7.7040 11.3409 4.9513 22 6 3.8439 5.3137 2.4307 23 6 2.1762 2.1690 -1.3003 24 6 3.5553 1.8881 -1.9003 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 2.1262 1.5286 2.0858 31 1 1.7476 3.3814 3.6892 32 1 3.3269 2.5648 3.8411 33 1 3.6852 4.1140 5.5469 34 1 2.4578 5.2504 4.8976 35 1 4.8035 6.7684 5.4407 36 1 3.5744 7.2967 4.2667 37 1 6.0354 7.0098 2.9109 38 1 8.1657 9.2717 1.6972 39 1 3.1094 6.1063 2.2876 40 1 4.6586 5.4165 1.7139 41 1 1.4037 1.8410 -1.9957 42 1 2.0703 3.2385 -1.1177 43 1 3.6612 0.8188 -2.0829 44 1 3.6595 2.4297 -2.8407 45 1 4.3279 2.2163 -1.2049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491795579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:47 Heat of formation + Delta-G solvation = -40.022700 kcal Electronic energy + Delta-G solvation = -22036.968879 eV Core-core repulsion = 18860.710728 eV Total energy + Delta-G solvation = -3176.258151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23359 -39.26293 -37.26433 -36.40667 -33.98675 -32.80535 -32.14711 -30.90347 -29.91098 -27.34635 -25.67709 -24.59174 -24.21530 -23.35850 -21.49890 -20.87633 -19.29876 -18.81300 -18.17972 -17.30694 -16.56595 -16.46330 -16.14061 -15.59393 -15.28558 -15.15547 -14.97524 -14.63488 -14.45942 -14.14465 -13.99486 -13.65694 -13.44669 -13.36402 -13.13132 -12.98990 -12.89568 -12.70746 -12.60033 -12.30162 -12.18084 -12.10503 -11.86122 -11.80828 -11.63701 -11.61339 -11.55350 -10.94651 -10.50155 -10.10990 -9.52753 -9.01796 -7.95642 -5.25489 0.39923 1.45664 1.49696 1.55782 2.06014 2.29271 2.55283 3.36796 3.42836 3.65665 3.75367 3.80196 3.89417 4.13011 4.22861 4.31115 4.32359 4.42217 4.43079 4.46055 4.58997 4.59998 4.65014 4.70430 4.80441 4.83172 4.88235 4.92862 4.99610 5.01580 5.08319 5.11983 5.16600 5.21957 5.34215 5.38481 5.40795 5.44626 5.48529 5.55239 5.70777 6.25632 6.62580 7.22762 7.31444 8.07833 8.29700 9.27962 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003283 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.906600 B = 8526.670547 C = 9365.841410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.016 4.016 4 C -0.232 4.232 5 C 0.541 3.459 6 O -0.579 6.579 7 N -0.620 5.620 8 C 0.100 3.900 9 C -0.112 4.112 10 C -0.098 4.098 11 H 0.075 0.925 12 C 0.164 3.836 13 N -0.749 5.749 14 C -0.246 4.246 15 H 0.080 0.920 16 C -0.080 4.080 17 N -0.973 5.973 18 Si 0.977 3.023 19 H -0.297 1.297 20 H -0.277 1.277 21 H -0.274 1.274 22 C 0.123 3.877 23 C -0.108 4.108 24 C -0.127 4.127 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.035 0.965 36 H 0.024 0.976 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 -21.826 1.077 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.018 4.018 4 C -0.253 4.253 5 C 0.335 3.665 6 O -0.462 6.462 7 N -0.353 5.353 8 C -0.021 4.021 9 C -0.150 4.150 10 C -0.117 4.117 11 H 0.094 0.906 12 C 0.037 3.963 13 N -0.392 5.392 14 C -0.378 4.378 15 H 0.098 0.902 16 C -0.272 4.272 17 N -0.624 5.624 18 Si 0.805 3.195 19 H -0.224 1.224 20 H -0.204 1.204 21 H -0.200 1.200 22 C -0.001 4.001 23 C -0.145 4.145 24 C -0.185 4.185 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.172 0.828 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.046 -21.453 0.592 26.797 hybrid contribution 0.964 1.419 -0.446 1.773 sum -15.082 -20.034 0.146 25.077 Atomic orbital electron populations 1.21722 0.93334 1.03004 1.02204 1.20813 0.97225 0.90269 1.04546 1.22826 0.88997 0.95950 0.94070 1.22407 1.07698 0.94677 1.00500 1.19026 0.79430 0.86286 0.81782 1.90737 1.53594 1.70698 1.31144 1.48608 1.59511 1.19431 1.07705 1.22302 1.01562 0.98396 0.79840 1.22674 0.97439 0.96870 0.98039 1.22414 0.99517 0.96346 0.93447 0.90649 1.20770 0.91045 0.89956 0.94517 1.42635 1.43962 1.10833 1.41735 1.19643 1.15093 0.89217 1.13841 0.90227 1.25651 0.99806 1.02822 0.98902 1.69838 1.28648 1.38070 1.25810 0.85161 0.77239 0.79724 0.77333 1.22358 1.20355 1.19958 1.21967 0.95875 0.84670 0.97539 1.20956 0.98215 1.00905 0.94427 1.21470 0.96015 1.01175 0.99797 0.90464 0.92477 0.92843 0.89378 0.89192 0.82764 0.89011 0.89292 0.87167 0.89387 0.94680 0.95783 0.79748 0.94080 0.92883 0.94362 0.90159 0.91259 0.91392 0.92979 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 71.98 0.71 -0.70 16 2 C -0.09 -1.07 6.11 29.85 0.18 -0.89 16 3 C -0.02 -0.32 4.61 -17.61 -0.08 -0.40 16 4 C -0.23 -5.05 9.10 23.43 0.21 -4.83 16 5 C 0.54 17.07 7.63 86.57 0.66 17.73 16 6 O -0.58 -23.10 11.94 -4.07 -0.05 -23.15 16 7 N -0.62 -18.31 3.33 -816.01 -2.71 -21.02 16 8 C 0.10 1.91 6.08 86.73 0.53 2.43 16 9 C -0.11 -2.26 6.42 31.78 0.20 -2.06 16 10 C -0.10 -3.10 3.11 -9.39 -0.03 -3.13 16 11 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 12 C 0.16 6.43 5.71 86.38 0.49 6.93 16 13 N -0.75 -39.35 5.45 -343.46 -1.87 -41.23 16 14 C -0.25 -14.11 9.99 84.04 0.84 -13.27 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 17 N -0.97 -62.24 13.06 21.65 0.28 -61.95 16 18 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 19 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 C 0.12 4.47 6.08 86.86 0.53 5.00 16 23 C -0.11 -2.56 5.32 29.85 0.16 -2.40 16 24 C -0.13 -3.14 9.45 71.98 0.68 -2.46 16 25 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.82 8.04 -2.38 -0.02 0.80 16 30 H 0.15 2.29 7.39 -2.91 -0.02 2.26 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.65 8.04 -2.38 -0.02 1.63 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.02 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.37 21.19 7.53 -92.71 -0.70 20.49 16 38 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.05 2.06 8.00 -2.38 -0.02 2.04 16 40 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 42 H 0.07 2.17 5.57 -2.38 -0.01 2.16 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.03 1.02 6.91 -2.39 -0.02 1.01 16 Total: -1.00 -75.13 361.09 3.48 -71.65 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.25 Total: 28.64 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.56 Total: -2.33 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -4.30 Total: -124.20 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -75.13 3.48 -71.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491795579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.628 kcal (2) G-P(sol) polarization free energy of solvation -75.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds