Wall clock time and date at job start Fri Apr 10 2020 17:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99695 * 2 1 4 4 C 1.52996 * 109.47147 * 124.99803 * 3 2 1 5 5 C 1.53005 * 109.47169 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47342 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99607 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00129 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99957 * 185.01419 * 8 6 5 10 10 C 1.53004 * 110.01454 * 62.41404 * 9 8 6 11 11 N 1.46495 * 109.47264 * 53.31033 * 10 9 8 12 12 C 1.36941 * 120.00323 * 174.88019 * 11 10 9 13 13 H 1.08004 * 119.99251 * 4.80912 * 12 11 10 14 14 C 1.38803 * 120.00028 * 184.81327 * 12 11 10 15 15 N 1.31631 * 119.99904 * 173.93359 * 14 12 11 16 16 Si 1.86800 * 120.00303 * 354.20995 * 14 12 11 17 17 H 1.48498 * 109.47286 * 94.17840 * 16 14 12 18 18 H 1.48498 * 109.46872 * 214.18038 * 16 14 12 19 19 H 1.48500 * 109.46802 * 334.17826 * 16 14 12 20 20 C 1.54261 * 110.07106 * 183.83170 * 9 8 6 21 21 C 1.54889 * 104.19574 * 95.70087 * 20 9 8 22 22 C 1.54887 * 102.75229 * 37.93996 * 21 20 9 23 23 C 1.53872 * 110.03246 * 301.02341 * 9 8 6 24 24 H 1.08003 * 120.00342 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00533 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00211 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47476 * 4.99484 * 3 2 1 28 28 H 1.09001 * 109.46507 * 244.99657 * 3 2 1 29 29 H 1.08999 * 109.47007 * 60.00020 * 4 3 2 30 30 H 1.09001 * 109.47297 * 299.99370 * 4 3 2 31 31 H 1.08997 * 109.47369 * 59.99734 * 5 4 3 32 32 H 1.09001 * 109.46593 * 299.99919 * 5 4 3 33 33 H 0.96999 * 119.99948 * 5.01390 * 8 6 5 34 34 H 1.08996 * 109.47119 * 293.30900 * 10 9 8 35 35 H 1.09007 * 109.46895 * 173.30922 * 10 9 8 36 36 H 0.97005 * 119.99698 * 354.88029 * 11 10 9 37 37 H 0.96999 * 120.00139 * 180.02562 * 15 14 12 38 38 H 1.09007 * 110.48205 * 214.37581 * 20 9 8 39 39 H 1.08998 * 110.49004 * 337.01631 * 20 9 8 40 40 H 1.09003 * 110.75452 * 279.62265 * 21 20 9 41 41 H 1.09000 * 110.75500 * 156.25989 * 21 20 9 42 42 H 1.08996 * 110.48510 * 203.38170 * 22 21 20 43 43 H 1.09002 * 110.48619 * 80.73212 * 22 21 20 44 44 H 1.09002 * 110.03556 * 359.95382 * 23 9 8 45 45 H 1.09005 * 110.03123 * 121.38295 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8003 2.6580 1.1813 6 6 4.7577 2.6855 2.3448 7 8 4.8211 1.7388 3.1002 8 7 5.5425 3.7624 2.5464 9 6 6.5499 3.7457 3.6100 10 6 7.5826 2.6505 3.3360 11 7 8.1261 2.8185 1.9860 12 6 9.1472 2.0147 1.5540 13 1 9.4995 1.2068 2.1783 14 6 9.7293 2.2383 0.3139 15 7 10.7868 1.5448 -0.0513 16 14 9.0167 3.5286 -0.8335 17 1 9.7353 4.8138 -0.6404 18 1 9.1733 3.0804 -2.2405 19 1 7.5750 3.7174 -0.5316 20 6 7.2471 5.1188 3.7003 21 6 6.4743 5.8645 4.8165 22 6 6.1855 4.7403 5.8420 23 6 5.8749 3.5050 4.9716 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4025 -0.9314 29 1 3.7398 0.5067 1.0921 30 1 2.4771 1.2358 2.1130 31 1 3.0957 3.4848 1.2705 32 1 4.3581 2.7550 0.2498 33 1 5.4404 4.5485 1.9874 34 1 7.1062 1.6735 3.4169 35 1 8.3904 2.7224 4.0644 36 1 7.7627 3.4991 1.3981 37 1 11.1939 1.7013 -0.9177 38 1 8.2944 4.9974 3.9772 39 1 7.1612 5.6534 2.7543 40 1 5.5450 6.2827 4.4297 41 1 7.0939 6.6433 5.2612 42 1 5.3248 4.9985 6.4588 43 1 7.0613 4.5577 6.4647 44 1 4.7977 3.4014 4.8413 45 1 6.2831 2.6079 5.4373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495186761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:03 Heat of formation + Delta-G solvation = -26.484188 kcal Electronic energy + Delta-G solvation = -22770.178441 eV Core-core repulsion = 19594.507364 eV Total energy + Delta-G solvation = -3175.671077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16250 -37.82603 -35.93522 -34.45603 -33.19612 -32.33254 -31.19334 -28.80186 -28.52596 -26.92834 -24.56372 -22.41638 -21.82977 -20.70840 -20.20189 -19.85671 -19.04959 -17.57334 -16.80301 -15.99144 -15.86304 -15.19749 -14.85144 -14.43984 -14.29920 -14.06185 -13.61343 -13.42580 -13.26063 -12.95206 -12.70010 -12.46717 -12.06447 -11.87612 -11.70200 -11.50868 -11.33068 -11.03265 -10.98566 -10.95244 -10.91950 -10.70151 -10.68005 -10.55503 -10.39891 -10.13615 -9.59376 -9.48532 -9.33521 -8.80727 -8.61400 -7.14416 -5.73404 -3.06605 2.15919 3.01471 3.33986 3.35339 3.43135 3.48841 4.59967 4.60237 4.68773 4.77217 4.88573 4.94223 5.02662 5.15840 5.24893 5.40773 5.45195 5.49835 5.54852 5.59922 5.63542 5.68882 5.72076 5.73035 5.78601 5.84913 5.89982 5.92241 6.03391 6.15454 6.17995 6.33812 6.36918 6.41955 6.46690 6.51279 6.53373 6.65519 6.85749 7.05799 7.84356 8.06279 8.45936 8.61250 9.26397 9.98545 10.20420 11.45500 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.006149 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.468782 B = 4552.409122 C = 6449.464360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.097 4.097 4 C -0.098 4.098 5 C -0.143 4.143 6 C 0.519 3.481 7 O -0.532 6.532 8 N -0.719 5.719 9 C 0.165 3.835 10 C 0.151 3.849 11 N -0.750 5.750 12 C -0.236 4.236 13 H 0.088 0.912 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.883 3.117 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.280 1.280 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.114 4.114 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.393 0.607 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.358 0.642 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.984 7.510 5.151 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.163 4.163 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.183 4.183 6 C 0.305 3.695 7 O -0.409 6.409 8 N -0.371 5.371 9 C 0.079 3.921 10 C 0.024 3.976 11 N -0.395 5.395 12 C -0.366 4.366 13 H 0.106 0.894 14 C -0.193 4.193 15 N -0.584 5.584 16 Si 0.714 3.286 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.206 1.206 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.153 4.153 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.227 0.773 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.190 0.810 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.732 6.634 5.705 19.773 hybrid contribution -0.393 1.217 -1.391 1.890 sum -18.124 7.851 4.313 20.217 Atomic orbital electron populations 1.23802 0.95951 1.01592 1.02721 1.23013 0.95992 0.98812 0.98469 1.20820 0.98165 0.95223 0.99193 1.21251 0.97577 0.96679 0.98058 1.21707 0.98234 1.00171 0.98197 1.20470 0.80872 0.82229 0.85924 1.90671 1.68164 1.35135 1.46881 1.46133 1.37176 1.17549 1.36229 1.21296 0.87739 0.96295 0.86761 1.21103 0.92790 0.95935 0.87818 1.42576 1.42665 1.42496 1.11804 1.19078 1.07029 1.09201 1.01272 0.89381 1.24644 0.97481 0.99153 0.98036 1.69722 1.22452 1.44383 1.21797 0.86532 0.78582 0.82184 0.81331 1.21250 1.21822 1.20599 1.22636 1.00504 0.93904 0.98863 1.22517 0.99789 0.97469 0.96392 1.22400 1.01089 0.95224 0.97586 1.22387 1.00952 0.98045 0.93943 0.88711 0.88795 0.87266 0.91679 0.90809 0.90724 0.91274 0.89559 0.88904 0.77302 0.94135 0.94630 0.80952 0.93202 0.89415 0.91429 0.91882 0.91611 0.92058 0.91509 0.91300 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 14.32 29.02 0.42 -1.44 16 2 C -0.14 -1.48 9.52 -36.02 -0.34 -1.82 16 3 C -0.10 -0.98 5.66 -27.88 -0.16 -1.14 16 4 C -0.10 -1.21 4.49 -26.73 -0.12 -1.33 16 5 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 6 C 0.52 8.23 6.98 -10.99 -0.08 8.15 16 7 O -0.53 -10.25 13.21 5.56 0.07 -10.18 16 8 N -0.72 -10.56 4.40 -46.57 -0.20 -10.76 16 9 C 0.17 2.60 0.58 -130.70 -0.08 2.52 16 10 C 0.15 3.13 4.59 -4.04 -0.02 3.11 16 11 N -0.75 -18.03 5.10 -59.91 -0.31 -18.34 16 12 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 13 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 14 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 15 N -0.93 -29.80 13.97 55.49 0.78 -29.02 16 16 Si 0.88 22.04 27.77 -169.99 -4.72 17.32 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.28 -6.42 6.49 56.52 0.37 -6.06 16 20 C -0.12 -1.66 5.82 -25.07 -0.15 -1.81 16 21 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 22 C -0.13 -1.44 6.83 -25.07 -0.17 -1.61 16 23 C -0.11 -1.63 5.17 -25.61 -0.13 -1.77 16 24 H 0.09 0.76 8.06 -52.48 -0.42 0.34 16 25 H 0.09 0.77 7.84 -52.49 -0.41 0.36 16 26 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.39 4.78 8.24 -40.82 -0.34 4.44 16 34 H 0.04 0.95 6.76 -51.93 -0.35 0.59 16 35 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 36 H 0.36 8.22 5.04 -40.82 -0.21 8.01 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 38 H 0.09 1.32 7.75 -51.93 -0.40 0.91 16 39 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.02 6.96 -51.93 -0.36 0.66 16 45 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -33.50 357.12 -8.34 -41.84 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.93 Total: 11.35 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.41 Total: -7.59 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.26 Total: -58.12 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.72 Total: 17.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.50 -8.34 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495186761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.353 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds