Wall clock time and date at job start Fri Apr 10 2020 17:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99695 * 2 1 4 4 C 1.52996 * 109.47147 * 124.99803 * 3 2 1 5 5 C 1.53005 * 109.47169 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47342 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99607 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00129 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99957 * 185.01419 * 8 6 5 10 10 C 1.53004 * 110.01454 * 62.41404 * 9 8 6 11 11 N 1.46495 * 109.47264 * 53.31033 * 10 9 8 12 12 C 1.36941 * 120.00323 * 174.88019 * 11 10 9 13 13 H 1.08004 * 119.99251 * 4.80912 * 12 11 10 14 14 C 1.38803 * 120.00028 * 184.81327 * 12 11 10 15 15 N 1.31631 * 119.99904 * 173.93359 * 14 12 11 16 16 Si 1.86800 * 120.00303 * 354.20995 * 14 12 11 17 17 H 1.48498 * 109.47286 * 94.17840 * 16 14 12 18 18 H 1.48498 * 109.46872 * 214.18038 * 16 14 12 19 19 H 1.48500 * 109.46802 * 334.17826 * 16 14 12 20 20 C 1.54261 * 110.07106 * 183.83170 * 9 8 6 21 21 C 1.54889 * 104.19574 * 95.70087 * 20 9 8 22 22 C 1.54887 * 102.75229 * 37.93996 * 21 20 9 23 23 C 1.53872 * 110.03246 * 301.02341 * 9 8 6 24 24 H 1.08003 * 120.00342 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00533 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00211 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47476 * 4.99484 * 3 2 1 28 28 H 1.09001 * 109.46507 * 244.99657 * 3 2 1 29 29 H 1.08999 * 109.47007 * 60.00020 * 4 3 2 30 30 H 1.09001 * 109.47297 * 299.99370 * 4 3 2 31 31 H 1.08997 * 109.47369 * 59.99734 * 5 4 3 32 32 H 1.09001 * 109.46593 * 299.99919 * 5 4 3 33 33 H 0.96999 * 119.99948 * 5.01390 * 8 6 5 34 34 H 1.08996 * 109.47119 * 293.30900 * 10 9 8 35 35 H 1.09007 * 109.46895 * 173.30922 * 10 9 8 36 36 H 0.97005 * 119.99698 * 354.88029 * 11 10 9 37 37 H 0.96999 * 120.00139 * 180.02562 * 15 14 12 38 38 H 1.09007 * 110.48205 * 214.37581 * 20 9 8 39 39 H 1.08998 * 110.49004 * 337.01631 * 20 9 8 40 40 H 1.09003 * 110.75452 * 279.62265 * 21 20 9 41 41 H 1.09000 * 110.75500 * 156.25989 * 21 20 9 42 42 H 1.08996 * 110.48510 * 203.38170 * 22 21 20 43 43 H 1.09002 * 110.48619 * 80.73212 * 22 21 20 44 44 H 1.09002 * 110.03556 * 359.95382 * 23 9 8 45 45 H 1.09005 * 110.03123 * 121.38295 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8003 2.6580 1.1813 6 6 4.7577 2.6855 2.3448 7 8 4.8211 1.7388 3.1002 8 7 5.5425 3.7624 2.5464 9 6 6.5499 3.7457 3.6100 10 6 7.5826 2.6505 3.3360 11 7 8.1261 2.8185 1.9860 12 6 9.1472 2.0147 1.5540 13 1 9.4995 1.2068 2.1783 14 6 9.7293 2.2383 0.3139 15 7 10.7868 1.5448 -0.0513 16 14 9.0167 3.5286 -0.8335 17 1 9.7353 4.8138 -0.6404 18 1 9.1733 3.0804 -2.2405 19 1 7.5750 3.7174 -0.5316 20 6 7.2471 5.1188 3.7003 21 6 6.4743 5.8645 4.8165 22 6 6.1855 4.7403 5.8420 23 6 5.8749 3.5050 4.9716 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4025 -0.9314 29 1 3.7398 0.5067 1.0921 30 1 2.4771 1.2358 2.1130 31 1 3.0957 3.4848 1.2705 32 1 4.3581 2.7550 0.2498 33 1 5.4404 4.5485 1.9874 34 1 7.1062 1.6735 3.4169 35 1 8.3904 2.7224 4.0644 36 1 7.7627 3.4991 1.3981 37 1 11.1939 1.7013 -0.9177 38 1 8.2944 4.9974 3.9772 39 1 7.1612 5.6534 2.7543 40 1 5.5450 6.2827 4.4297 41 1 7.0939 6.6433 5.2612 42 1 5.3248 4.9985 6.4588 43 1 7.0613 4.5577 6.4647 44 1 4.7977 3.4014 4.8413 45 1 6.2831 2.6079 5.4373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495186761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:02 Heat of formation + Delta-G solvation = -48.426716 kcal Electronic energy + Delta-G solvation = -22771.129940 eV Core-core repulsion = 19594.507364 eV Total energy + Delta-G solvation = -3176.622577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41920 -39.02370 -36.81259 -36.32802 -34.52666 -33.50274 -33.05287 -30.14008 -29.68711 -27.97632 -26.22513 -23.83797 -23.31129 -21.77545 -21.24296 -20.70928 -20.47458 -19.56157 -17.94321 -17.29758 -16.86544 -16.47493 -16.35236 -15.87259 -15.57525 -15.15227 -15.00365 -14.82381 -14.55445 -14.32879 -14.05509 -13.73676 -13.64598 -13.35643 -12.87269 -12.62602 -12.60516 -12.41927 -12.23609 -12.11505 -11.96356 -11.92282 -11.86038 -11.76376 -11.73047 -11.62814 -11.40111 -11.03733 -10.59183 -10.19199 -9.93025 -9.28829 -8.04448 -5.37870 1.32217 1.39981 1.41366 1.47438 1.78860 2.32889 2.47107 3.24536 3.45968 3.65892 3.76868 3.85864 3.92072 3.97743 4.06930 4.32482 4.37386 4.38444 4.49208 4.55105 4.65435 4.68265 4.69732 4.76191 4.81905 4.87028 4.90802 4.92578 5.06626 5.08214 5.10641 5.18887 5.22599 5.25481 5.35130 5.39663 5.50035 5.70622 5.76842 5.77835 5.90566 6.18456 6.69995 7.05950 7.43052 7.79665 8.05677 9.17618 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.006149 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.468782 B = 4552.409122 C = 6449.464360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.170 4.170 3 C -0.088 4.088 4 C -0.094 4.094 5 C -0.136 4.136 6 C 0.507 3.493 7 O -0.576 6.576 8 N -0.712 5.712 9 C 0.169 3.831 10 C 0.153 3.847 11 N -0.742 5.742 12 C -0.239 4.239 13 H 0.042 0.958 14 C -0.065 4.065 15 N -0.985 5.985 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.296 1.296 19 H -0.245 1.245 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.410 0.590 34 H 0.007 0.993 35 H 0.026 0.974 36 H 0.368 0.632 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.718 11.207 4.380 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.188 4.188 3 C -0.125 4.125 4 C -0.132 4.132 5 C -0.175 4.175 6 C 0.295 3.705 7 O -0.455 6.455 8 N -0.364 5.364 9 C 0.083 3.917 10 C 0.025 3.975 11 N -0.388 5.388 12 C -0.370 4.370 13 H 0.060 0.940 14 C -0.256 4.256 15 N -0.636 5.636 16 Si 0.786 3.214 17 H -0.198 1.198 18 H -0.222 1.222 19 H -0.169 1.169 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.247 0.753 34 H 0.025 0.975 35 H 0.044 0.956 36 H 0.202 0.798 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.502 10.371 4.953 23.504 hybrid contribution 0.498 -0.103 -1.068 1.182 sum -20.004 10.268 3.886 22.819 Atomic orbital electron populations 1.24009 0.95533 1.02722 1.00581 1.23058 0.96642 0.98687 1.00454 1.20753 0.97915 0.95898 0.97959 1.21177 0.97320 0.95832 0.98859 1.21749 0.98110 1.01302 0.96385 1.21247 0.81150 0.81672 0.86388 1.90663 1.69471 1.36725 1.48651 1.46078 1.36236 1.18048 1.36081 1.21165 0.87003 0.95672 0.87874 1.21131 0.93681 0.96675 0.85984 1.42398 1.41551 1.41742 1.13137 1.18980 1.08206 1.08728 1.01097 0.94002 1.25591 0.97814 1.02308 0.99877 1.69933 1.24346 1.46867 1.22407 0.85315 0.79650 0.78785 0.77651 1.19784 1.22247 1.16866 1.22631 0.99697 0.92739 1.00838 1.22481 1.00438 0.97109 0.94792 1.22393 1.02009 0.93839 0.97516 1.22307 1.00193 0.98768 0.93624 0.87891 0.87371 0.88320 0.89525 0.90620 0.94125 0.92164 0.85514 0.88303 0.75307 0.97516 0.95598 0.79807 0.93289 0.91122 0.90114 0.89990 0.89740 0.90032 0.91454 0.91712 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 14.32 67.78 0.97 -2.13 16 2 C -0.17 -3.32 9.52 25.65 0.24 -3.07 16 3 C -0.09 -1.63 5.66 29.85 0.17 -1.46 16 4 C -0.09 -2.26 4.49 30.59 0.14 -2.13 16 5 C -0.14 -3.00 5.70 29.85 0.17 -2.83 16 6 C 0.51 15.61 6.98 87.66 0.61 16.22 16 7 O -0.58 -22.84 13.21 -3.03 -0.04 -22.88 16 8 N -0.71 -19.39 4.40 -419.66 -1.85 -21.24 16 9 C 0.17 5.18 0.58 4.33 0.00 5.19 16 10 C 0.15 6.54 4.59 86.38 0.40 6.94 16 11 N -0.74 -35.97 5.10 -343.45 -1.75 -37.72 16 12 C -0.24 -14.37 10.47 84.03 0.88 -13.49 16 13 H 0.04 2.83 8.06 -2.91 -0.02 2.81 16 14 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 15 N -0.99 -64.68 13.97 21.65 0.30 -64.38 16 16 Si 0.96 44.80 27.77 68.60 1.91 46.70 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 19 H -0.24 -9.87 6.49 99.48 0.65 -9.22 16 20 C -0.12 -3.01 5.82 31.67 0.18 -2.83 16 21 C -0.11 -1.99 6.91 31.88 0.22 -1.77 16 22 C -0.12 -2.45 6.83 31.67 0.22 -2.23 16 23 C -0.11 -3.08 5.17 31.32 0.16 -2.92 16 24 H 0.10 1.47 8.06 -2.91 -0.02 1.44 16 25 H 0.11 1.44 7.84 -2.91 -0.02 1.42 16 26 H 0.10 2.06 8.06 -2.91 -0.02 2.04 16 27 H 0.09 1.23 7.79 -2.39 -0.02 1.22 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 30 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 31 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.41 8.34 8.24 -92.71 -0.76 7.57 16 34 H 0.01 0.34 6.76 -2.39 -0.02 0.32 16 35 H 0.03 1.15 8.00 -2.38 -0.02 1.13 16 36 H 0.37 16.20 5.04 -92.70 -0.47 15.74 16 37 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 38 H 0.07 2.02 7.75 -2.38 -0.02 2.00 16 39 H 0.08 1.80 7.71 -2.39 -0.02 1.78 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.87 6.96 -2.39 -0.02 1.86 16 45 H 0.05 1.58 7.67 -2.38 -0.02 1.56 16 Total: -1.00 -77.23 357.12 3.07 -74.16 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.34 Total: 35.30 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.83 Total: -9.95 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -3.30 Total: -123.34 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.04 Total: -22.88 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.91 Total: 46.70 kcal Total: -77.23 3.07 -74.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495186761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.735 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds