Wall clock time and date at job start Fri Apr 10 2020 17:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47563 * 2 1 4 4 C 1.52999 * 109.47342 * 239.99453 * 2 1 3 5 5 C 1.52999 * 109.47463 * 185.27308 * 4 2 1 6 6 H 1.08997 * 109.47011 * 305.96872 * 5 4 2 7 7 C 1.53002 * 109.47001 * 65.97270 * 5 4 2 8 8 N 1.46495 * 109.47217 * 174.99982 * 7 5 4 9 9 C 1.36931 * 120.00112 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99985 * 0.02562 * 9 8 7 11 11 C 1.38812 * 119.99950 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99766 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00177 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47347 * 89.99731 * 13 11 9 15 15 H 1.48508 * 109.47237 * 209.99725 * 13 11 9 16 16 H 1.48503 * 109.47159 * 329.99720 * 13 11 9 17 17 N 1.46501 * 109.46921 * 185.97055 * 5 4 2 18 18 C 1.34773 * 120.00116 * 81.56852 * 17 5 4 19 19 O 1.21284 * 119.99919 * 4.93045 * 18 17 5 20 20 C 1.50695 * 120.00328 * 184.92136 * 18 17 5 21 21 C 1.54637 * 111.03989 * 292.02650 * 20 18 17 22 22 C 1.51096 * 104.72822 * 217.33067 * 21 20 18 23 23 C 1.30531 * 111.10521 * 16.43684 * 22 21 20 24 24 C 1.51102 * 111.10001 * 359.97438 * 23 22 21 25 25 H 1.08990 * 109.46843 * 59.99845 * 1 2 3 26 26 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46669 * 300.00132 * 1 2 3 28 28 H 1.09003 * 109.47110 * 120.00157 * 2 1 3 29 29 H 1.08997 * 109.47461 * 174.58465 * 3 2 1 30 30 H 1.09001 * 109.47100 * 294.59006 * 3 2 1 31 31 H 1.09002 * 109.47037 * 54.58112 * 3 2 1 32 32 H 1.09004 * 109.47260 * 305.28262 * 4 2 1 33 33 H 1.09007 * 109.46376 * 65.27593 * 4 2 1 34 34 H 1.09004 * 109.46659 * 294.99997 * 7 5 4 35 35 H 1.09001 * 109.46953 * 54.99939 * 7 5 4 36 36 H 0.97003 * 119.99962 * 359.97438 * 8 7 5 37 37 H 0.97006 * 120.00220 * 179.97438 * 12 11 9 38 38 H 0.97003 * 120.00134 * 261.56845 * 17 5 4 39 39 H 1.08997 * 110.91326 * 56.03308 * 20 18 17 40 40 H 1.09003 * 110.38600 * 336.14724 * 21 20 18 41 41 H 1.09005 * 110.38372 * 98.52016 * 21 20 18 42 42 H 1.08003 * 124.44838 * 196.45707 * 22 21 20 43 43 H 1.07993 * 124.44647 * 180.02562 * 23 22 21 44 44 H 1.09000 * 110.38551 * 224.74747 * 24 23 22 45 45 H 1.09001 * 110.38642 * 102.37938 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5643 -0.8372 -1.1846 6 1 3.9975 0.1509 -1.0297 7 6 3.9574 -1.7541 -0.0246 8 7 5.4077 -1.9608 -0.0354 9 6 5.9936 -2.7516 0.9166 10 1 5.3866 -3.2233 1.6752 11 6 7.3678 -2.9478 0.9061 12 7 7.9309 -3.7084 1.8208 13 14 8.4176 -2.1326 -0.4063 14 1 8.8618 -0.7991 0.0727 15 1 9.6055 -2.9789 -0.6863 16 1 7.6204 -1.9719 -1.6488 17 7 4.0650 -1.3983 -2.4419 18 6 4.2345 -0.6012 -3.5154 19 8 4.0584 0.5947 -3.4165 20 6 4.6429 -1.1958 -4.8385 21 6 6.0872 -1.7449 -4.7782 22 6 6.6766 -1.4251 -6.1322 23 6 5.9621 -0.5282 -6.7559 24 6 4.7768 -0.1008 -5.9219 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.1257 1.4439 0.0970 30 1 1.7581 1.9275 -0.9345 31 1 1.5997 1.9835 0.8375 32 1 1.6015 -1.7181 -1.2977 33 1 1.7559 -0.1558 -2.1367 34 1 3.6630 -1.2934 0.9184 35 1 3.4527 -2.7141 -0.1332 36 1 5.9529 -1.5374 -0.7169 37 1 8.8912 -3.8459 1.8133 38 1 4.2745 -2.3435 -2.5018 39 1 3.9420 -1.9702 -5.1499 40 1 6.6511 -1.2446 -3.9908 41 1 6.0772 -2.8223 -4.6133 42 1 7.5713 -1.8793 -6.5317 43 1 6.1881 -0.1429 -7.7391 44 1 3.8763 -0.0600 -6.5347 45 1 4.9670 0.8681 -5.4602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496261086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:16 Heat of formation + Delta-G solvation = -48.179614 kcal Electronic energy + Delta-G solvation = -22867.842258 eV Core-core repulsion = 19691.230397 eV Total energy + Delta-G solvation = -3176.611861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.39440 -39.28797 -38.02256 -36.48577 -35.15479 -33.34058 -31.42340 -29.84796 -29.07582 -28.01641 -27.39142 -24.53409 -23.76652 -22.30803 -20.92865 -20.71003 -19.74955 -19.62141 -18.30850 -17.37326 -17.01097 -16.87450 -16.21009 -15.71913 -15.56755 -15.34198 -14.86772 -14.58492 -14.38824 -14.16255 -13.81236 -13.74079 -13.37342 -13.27374 -13.07720 -13.04528 -12.89514 -12.71791 -12.57944 -12.28577 -12.21878 -12.07095 -12.01916 -11.88971 -11.82483 -11.56115 -11.37262 -11.06219 -10.78137 -10.01963 -9.83448 -9.32919 -8.04819 -5.38019 1.31553 1.33881 1.36625 1.42600 1.59724 2.18410 2.44249 3.27509 3.44684 3.52684 3.59181 3.79872 3.92982 4.02834 4.08349 4.13950 4.23726 4.33839 4.38805 4.52878 4.56624 4.74450 4.74696 4.75797 4.81361 4.88168 4.89847 4.93912 4.97537 5.03282 5.04333 5.11929 5.14857 5.16283 5.34363 5.47031 5.49823 5.56739 5.59866 5.74505 5.96265 6.18599 6.55206 7.04625 7.22442 7.79952 7.98458 9.16403 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.008890 B = 0.008158 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.764523 B = 3431.559936 C = 6138.969267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.107 4.107 5 C 0.140 3.860 6 H 0.068 0.932 7 C 0.150 3.850 8 N -0.756 5.756 9 C -0.229 4.229 10 H 0.063 0.937 11 C -0.057 4.057 12 N -0.980 5.980 13 Si 0.945 3.055 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.250 1.250 17 N -0.713 5.713 18 C 0.520 3.480 19 O -0.577 6.577 20 C -0.112 4.112 21 C -0.098 4.098 22 C -0.174 4.174 23 C -0.161 4.161 24 C -0.088 4.088 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.364 0.636 37 H 0.258 0.742 38 H 0.410 0.590 39 H 0.131 0.869 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.089 0.911 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 5.712 -16.081 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.146 4.146 5 C 0.035 3.965 6 H 0.086 0.914 7 C 0.023 3.977 8 N -0.402 5.402 9 C -0.360 4.360 10 H 0.081 0.919 11 C -0.249 4.249 12 N -0.630 5.630 13 Si 0.773 3.227 14 H -0.217 1.217 15 H -0.219 1.219 16 H -0.175 1.175 17 N -0.364 5.364 18 C 0.307 3.693 19 O -0.457 6.457 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.192 4.192 23 C -0.178 4.178 24 C -0.125 4.125 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.197 0.803 37 H 0.067 0.933 38 H 0.246 0.754 39 H 0.149 0.851 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.107 0.893 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.372 6.413 -15.810 21.074 hybrid contribution 1.361 -0.071 -0.124 1.368 sum -11.011 6.341 -15.934 20.380 Atomic orbital electron populations 1.21773 0.93570 1.02234 1.02071 1.21151 0.96955 0.95970 0.97651 1.21838 1.00245 0.96392 1.01739 1.21867 0.92627 1.01492 0.98577 1.21216 0.95243 0.97214 0.82810 0.91418 1.21127 0.83399 0.97100 0.96047 1.42690 1.03981 1.59237 1.34246 1.19023 0.91169 1.20344 1.05464 0.91891 1.25371 0.97825 1.00969 1.00686 1.69859 1.10585 1.44446 1.38150 0.85573 0.78903 0.77564 0.80686 1.21748 1.21900 1.17457 1.46076 1.66201 1.13143 1.10984 1.20850 0.75657 0.86424 0.86321 1.90646 1.52902 1.16461 1.85679 1.22231 0.99019 1.00260 0.91778 1.21393 0.93031 1.02194 0.96946 1.23354 1.00790 0.99983 0.95066 1.23461 0.96557 0.97729 1.00079 1.21282 0.98554 0.97923 0.94790 0.92618 0.92006 0.91951 0.91054 0.94312 0.93068 0.91714 0.90330 0.92064 0.93831 0.93902 0.80331 0.93343 0.75403 0.85125 0.92797 0.89054 0.84000 0.83397 0.89282 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.19 71.98 0.66 -1.89 16 2 C -0.10 -2.27 2.80 -10.80 -0.03 -2.30 16 3 C -0.14 -3.55 8.83 71.98 0.64 -2.92 16 4 C -0.11 -2.64 4.39 30.59 0.13 -2.50 16 5 C 0.14 4.28 2.08 44.99 0.09 4.37 16 6 H 0.07 2.40 5.91 -2.39 -0.01 2.39 16 7 C 0.15 5.35 5.46 86.38 0.47 5.82 16 8 N -0.76 -34.16 5.24 -343.45 -1.80 -35.96 16 9 C -0.23 -12.72 10.47 84.03 0.88 -11.84 16 10 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 11 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 12 N -0.98 -62.04 13.97 21.65 0.30 -61.74 16 13 Si 0.94 45.58 27.74 68.60 1.90 47.49 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 15 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.25 -10.79 6.52 99.48 0.65 -10.15 16 17 N -0.71 -20.36 4.55 -442.54 -2.01 -22.38 16 18 C 0.52 15.23 6.93 87.66 0.61 15.83 16 19 O -0.58 -20.75 15.20 -3.04 -0.05 -20.80 16 20 C -0.11 -2.52 3.55 -10.43 -0.04 -2.55 16 21 C -0.10 -2.30 6.37 30.53 0.19 -2.11 16 22 C -0.17 -3.47 10.77 26.26 0.28 -3.19 16 23 C -0.16 -2.99 10.78 26.26 0.28 -2.70 16 24 C -0.09 -1.90 6.18 30.53 0.19 -1.72 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.07 1.76 6.48 -2.39 -0.02 1.74 16 29 H 0.04 1.09 6.71 -2.39 -0.02 1.08 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.60 8.09 -2.38 -0.02 1.58 16 34 H 0.04 1.60 6.73 -2.39 -0.02 1.58 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.36 16.28 5.20 -92.71 -0.48 15.80 16 37 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 38 H 0.41 10.82 8.58 -92.71 -0.80 10.02 16 39 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.57 7.88 -2.39 -0.02 1.55 16 41 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 1.89 6.96 -2.39 -0.02 1.87 16 Total: -1.00 -68.83 357.15 2.81 -66.02 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.37 Total: 37.89 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.83 Total: -10.53 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -3.51 Total: -120.07 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.49 kcal Total: -68.83 2.81 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496261086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.841 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds