Wall clock time and date at job start Fri Apr 10 2020 17:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47030 * 2 1 4 4 C 1.50702 * 119.99747 * 275.00266 * 3 2 1 5 5 C 1.32992 * 120.00718 * 94.99510 * 3 2 1 6 6 C 1.47094 * 120.00685 * 185.63594 * 5 3 2 7 7 O 1.21613 * 119.99731 * 354.73554 * 6 5 3 8 8 N 1.34769 * 120.00095 * 174.73617 * 6 5 3 9 9 C 1.47021 * 125.65156 * 359.97438 * 8 6 5 10 10 C 1.54323 * 107.27326 * 178.97864 * 9 8 6 11 11 H 1.09004 * 110.71935 * 219.26972 * 10 9 8 12 12 C 1.52998 * 110.72620 * 96.16872 * 10 9 8 13 13 C 1.55157 * 103.10229 * 337.71479 * 10 9 8 14 14 H 1.09007 * 111.00645 * 277.51903 * 13 10 9 15 15 C 1.52995 * 111.00832 * 153.66932 * 13 10 9 16 16 N 1.46497 * 109.47561 * 175.00114 * 15 13 10 17 17 C 1.36934 * 119.99999 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38820 * 120.00091 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99532 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47084 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47222 * 120.00209 * 21 19 17 24 24 H 1.48508 * 109.47085 * 240.00295 * 21 19 17 25 25 C 1.47427 * 125.64791 * 180.02562 * 8 6 5 26 26 H 1.09003 * 109.47117 * 299.99638 * 1 2 3 27 27 H 1.08997 * 109.47669 * 60.00263 * 1 2 3 28 28 H 1.09003 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47345 * 239.99664 * 2 1 3 30 30 H 1.08997 * 109.47415 * 119.99248 * 2 1 3 31 31 H 1.09002 * 109.46831 * 238.22918 * 4 3 2 32 32 H 1.09000 * 109.46962 * 358.22525 * 4 3 2 33 33 H 1.09001 * 109.47649 * 118.22859 * 4 3 2 34 34 H 1.08001 * 119.99505 * 5.64107 * 5 3 2 35 35 H 1.09002 * 109.88414 * 59.55539 * 9 8 6 36 36 H 1.09007 * 109.88051 * 298.39020 * 9 8 6 37 37 H 1.09002 * 109.46738 * 63.83509 * 12 10 9 38 38 H 1.09005 * 109.46983 * 303.84622 * 12 10 9 39 39 H 1.08999 * 109.47296 * 183.84291 * 12 10 9 40 40 H 1.09004 * 109.46743 * 295.00158 * 15 13 10 41 41 H 1.09001 * 109.47332 * 54.99582 * 15 13 10 42 42 H 0.96997 * 119.99925 * 359.97438 * 16 15 13 43 43 H 0.96999 * 119.99632 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.36518 * 322.93151 * 25 8 6 45 45 H 1.08997 * 110.36652 * 85.14605 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1761 2.1691 -1.3002 5 6 2.3485 2.0145 1.1473 6 6 2.7198 3.4377 1.1612 7 8 2.8308 4.0474 0.1149 8 7 2.9369 4.0661 2.3336 9 6 2.8374 3.4525 3.6659 10 6 3.1954 4.5411 4.6996 11 1 3.7929 4.1223 5.5094 12 6 1.9302 5.2029 5.2493 13 6 4.0284 5.5536 3.8699 14 1 5.0666 5.2314 3.7882 15 6 3.9382 6.9587 4.4684 16 7 4.8281 7.8608 3.7331 17 6 4.9146 9.1795 4.0917 18 1 4.3273 9.5545 4.9168 19 6 5.7582 10.0342 3.3954 20 7 6.4745 9.5771 2.3902 21 14 5.8769 11.8329 3.8849 22 1 4.9777 12.0925 5.0379 23 1 7.2761 12.1505 4.2677 24 1 5.4716 12.6857 2.7386 25 6 3.3126 5.4828 2.4924 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.2098 2.4934 -1.4203 32 1 1.9020 1.5152 -2.1280 33 1 1.5207 3.0401 -1.2927 34 1 2.3328 1.4515 2.0688 35 1 3.5384 2.6215 3.7447 36 1 1.8202 3.0997 3.8365 37 1 1.3398 4.4640 5.7911 38 1 1.3418 5.6036 4.4238 39 1 2.2076 6.0124 5.9244 40 1 2.9125 7.3200 4.3942 41 1 4.2374 6.9273 5.5160 42 1 5.3559 7.5239 2.9924 43 1 7.0636 10.1743 1.9033 44 1 3.9921 5.7866 1.6962 45 1 2.4234 6.1133 2.4926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501110726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:31 Heat of formation + Delta-G solvation = -22.380693 kcal Electronic energy + Delta-G solvation = -22167.815101 eV Core-core repulsion = 18992.321965 eV Total energy + Delta-G solvation = -3175.493136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.14770 -38.29817 -36.13767 -34.63084 -32.78580 -31.21326 -31.05138 -29.19264 -27.80793 -26.48659 -25.43581 -24.15504 -23.05621 -21.71256 -20.07244 -19.20863 -18.05024 -17.25587 -16.78527 -15.99574 -15.30598 -14.88204 -14.76832 -14.52279 -14.38099 -13.83422 -13.61229 -13.27558 -13.19604 -12.85754 -12.73967 -12.47829 -12.41130 -12.29641 -12.16891 -11.80708 -11.65784 -11.57296 -11.48889 -11.18426 -10.99419 -10.83275 -10.50112 -10.35446 -10.29190 -9.94669 -9.66273 -9.44133 -9.26619 -8.84976 -8.38036 -6.89333 -5.73134 -3.02244 1.33011 3.18350 3.39106 3.45695 3.50779 3.53443 4.38259 4.56333 4.59150 4.62790 4.76795 4.94070 4.94624 4.99817 5.09636 5.29291 5.35341 5.45259 5.49407 5.50880 5.56506 5.59223 5.62297 5.64371 5.80338 5.83843 5.87543 5.91664 5.97626 6.03374 6.10552 6.20324 6.25808 6.36320 6.39317 6.43312 6.47095 6.60854 6.72649 6.86670 7.72659 7.73357 8.36986 8.45211 9.56369 10.14103 10.48296 11.49685 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.003397 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.906295 B = 8239.965366 C = 9042.221637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.035 4.035 4 C -0.115 4.115 5 C -0.225 4.225 6 C 0.555 3.445 7 O -0.540 6.540 8 N -0.615 5.615 9 C 0.107 3.893 10 C -0.098 4.098 11 H 0.088 0.912 12 C -0.144 4.144 13 C -0.101 4.101 14 H 0.084 0.916 15 C 0.166 3.834 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.118 3.882 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.081 0.919 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 -21.229 0.401 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.037 4.037 4 C -0.171 4.171 5 C -0.246 4.246 6 C 0.347 3.653 7 O -0.420 6.420 8 N -0.349 5.349 9 C -0.016 4.016 10 C -0.118 4.118 11 H 0.106 0.894 12 C -0.201 4.201 13 C -0.121 4.121 14 H 0.103 0.897 15 C 0.038 3.962 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.004 4.004 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.500 -20.778 -0.129 23.748 hybrid contribution 0.370 0.859 0.181 0.952 sum -11.130 -19.919 0.052 22.818 Atomic orbital electron populations 1.21709 0.94136 1.01944 1.02549 1.20747 0.96580 0.92719 1.03177 1.22554 0.90483 0.95189 0.95484 1.21025 1.04107 0.99391 0.92622 1.22390 1.08981 0.94358 0.98845 1.18189 0.77525 0.87316 0.82237 1.90797 1.52281 1.68222 1.30699 1.48423 1.68774 1.12253 1.05430 1.22113 1.00874 0.96260 0.82360 1.22196 0.97507 0.95209 0.96851 0.89399 1.21842 0.96404 1.00697 1.01183 1.22694 0.99059 0.96668 0.93671 0.89734 1.20626 0.94340 0.86715 0.94504 1.42400 1.50308 1.06580 1.38505 1.19250 1.20129 0.85486 1.12202 0.91140 1.24756 0.99669 0.98236 0.98363 1.69676 1.30665 1.34613 1.23050 0.86124 0.77253 0.85320 0.77527 1.20579 1.21905 1.21872 1.22365 0.99443 0.80512 0.98103 0.92372 0.92277 0.92118 0.90542 0.90858 0.89901 0.93139 0.89871 0.85964 0.91708 0.91592 0.92954 0.92405 0.91389 0.95734 0.95913 0.78260 0.93550 0.90050 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.70 6.03 -27.88 -0.17 -0.86 16 3 C -0.04 -0.37 5.36 -101.17 -0.54 -0.91 16 4 C -0.12 -1.34 8.34 36.01 0.30 -1.04 16 5 C -0.22 -2.64 9.13 -37.81 -0.35 -2.98 16 6 C 0.56 8.69 7.76 -12.67 -0.10 8.59 16 7 O -0.54 -10.26 13.36 5.27 0.07 -10.19 16 8 N -0.62 -9.14 3.33 -171.60 -0.57 -9.71 16 9 C 0.11 1.21 5.65 -3.06 -0.02 1.19 16 10 C -0.10 -1.18 3.46 -88.79 -0.31 -1.48 16 11 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.14 -1.63 7.95 37.16 0.30 -1.34 16 13 C -0.10 -1.63 2.93 -88.21 -0.26 -1.89 16 14 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 15 C 0.17 3.25 4.52 -4.05 -0.02 3.24 16 16 N -0.73 -18.70 5.56 -59.91 -0.33 -19.03 16 17 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 21 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 C 0.12 2.03 6.03 -2.26 -0.01 2.01 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.07 0.47 7.99 -51.93 -0.41 0.05 16 31 H 0.08 1.12 7.32 -51.93 -0.38 0.74 16 32 H 0.05 0.46 7.99 -51.93 -0.41 0.05 16 33 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 34 H 0.12 1.14 7.33 -52.49 -0.38 0.76 16 35 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 36 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.72 7.48 -51.93 -0.39 0.33 16 39 H 0.07 0.82 6.94 -51.93 -0.36 0.46 16 40 H 0.02 0.49 6.97 -51.93 -0.36 0.13 16 41 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 42 H 0.38 10.41 7.67 -40.82 -0.31 10.09 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 45 H 0.07 1.23 7.54 -51.93 -0.39 0.84 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -32.75 358.28 -8.73 -41.48 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.95 Total: 5.88 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.05 Total: -3.51 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.18 Total: -56.76 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.75 -8.73 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501110726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.100 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds