Wall clock time and date at job start Fri Apr 10 2020 17:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47030 * 2 1 4 4 C 1.50702 * 119.99747 * 275.00266 * 3 2 1 5 5 C 1.32992 * 120.00718 * 94.99510 * 3 2 1 6 6 C 1.47094 * 120.00685 * 185.63594 * 5 3 2 7 7 O 1.21613 * 119.99731 * 354.73554 * 6 5 3 8 8 N 1.34769 * 120.00095 * 174.73617 * 6 5 3 9 9 C 1.47021 * 125.65156 * 359.97438 * 8 6 5 10 10 C 1.54323 * 107.27326 * 178.97864 * 9 8 6 11 11 H 1.09004 * 110.71935 * 219.26972 * 10 9 8 12 12 C 1.52998 * 110.72620 * 96.16872 * 10 9 8 13 13 C 1.55157 * 103.10229 * 337.71479 * 10 9 8 14 14 H 1.09007 * 111.00645 * 277.51903 * 13 10 9 15 15 C 1.52995 * 111.00832 * 153.66932 * 13 10 9 16 16 N 1.46497 * 109.47561 * 175.00114 * 15 13 10 17 17 C 1.36934 * 119.99999 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38820 * 120.00091 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99532 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47084 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47222 * 120.00209 * 21 19 17 24 24 H 1.48508 * 109.47085 * 240.00295 * 21 19 17 25 25 C 1.47427 * 125.64791 * 180.02562 * 8 6 5 26 26 H 1.09003 * 109.47117 * 299.99638 * 1 2 3 27 27 H 1.08997 * 109.47669 * 60.00263 * 1 2 3 28 28 H 1.09003 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47345 * 239.99664 * 2 1 3 30 30 H 1.08997 * 109.47415 * 119.99248 * 2 1 3 31 31 H 1.09002 * 109.46831 * 238.22918 * 4 3 2 32 32 H 1.09000 * 109.46962 * 358.22525 * 4 3 2 33 33 H 1.09001 * 109.47649 * 118.22859 * 4 3 2 34 34 H 1.08001 * 119.99505 * 5.64107 * 5 3 2 35 35 H 1.09002 * 109.88414 * 59.55539 * 9 8 6 36 36 H 1.09007 * 109.88051 * 298.39020 * 9 8 6 37 37 H 1.09002 * 109.46738 * 63.83509 * 12 10 9 38 38 H 1.09005 * 109.46983 * 303.84622 * 12 10 9 39 39 H 1.08999 * 109.47296 * 183.84291 * 12 10 9 40 40 H 1.09004 * 109.46743 * 295.00158 * 15 13 10 41 41 H 1.09001 * 109.47332 * 54.99582 * 15 13 10 42 42 H 0.96997 * 119.99925 * 359.97438 * 16 15 13 43 43 H 0.96999 * 119.99632 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.36518 * 322.93151 * 25 8 6 45 45 H 1.08997 * 110.36652 * 85.14605 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1761 2.1691 -1.3002 5 6 2.3485 2.0145 1.1473 6 6 2.7198 3.4377 1.1612 7 8 2.8308 4.0474 0.1149 8 7 2.9369 4.0661 2.3336 9 6 2.8374 3.4525 3.6659 10 6 3.1954 4.5411 4.6996 11 1 3.7929 4.1223 5.5094 12 6 1.9302 5.2029 5.2493 13 6 4.0284 5.5536 3.8699 14 1 5.0666 5.2314 3.7882 15 6 3.9382 6.9587 4.4684 16 7 4.8281 7.8608 3.7331 17 6 4.9146 9.1795 4.0917 18 1 4.3273 9.5545 4.9168 19 6 5.7582 10.0342 3.3954 20 7 6.4745 9.5771 2.3902 21 14 5.8769 11.8329 3.8849 22 1 4.9777 12.0925 5.0379 23 1 7.2761 12.1505 4.2677 24 1 5.4716 12.6857 2.7386 25 6 3.3126 5.4828 2.4924 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.2098 2.4934 -1.4203 32 1 1.9020 1.5152 -2.1280 33 1 1.5207 3.0401 -1.2927 34 1 2.3328 1.4515 2.0688 35 1 3.5384 2.6215 3.7447 36 1 1.8202 3.0997 3.8365 37 1 1.3398 4.4640 5.7911 38 1 1.3418 5.6036 4.4238 39 1 2.2076 6.0124 5.9244 40 1 2.9125 7.3200 4.3942 41 1 4.2374 6.9273 5.5160 42 1 5.3559 7.5239 2.9924 43 1 7.0636 10.1743 1.9033 44 1 3.9921 5.7866 1.6962 45 1 2.4234 6.1133 2.4926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501110726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:29 Heat of formation + Delta-G solvation = -42.914660 kcal Electronic energy + Delta-G solvation = -22168.705521 eV Core-core repulsion = 18992.321965 eV Total energy + Delta-G solvation = -3176.383556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.33013 -39.47820 -37.03122 -36.43352 -34.26774 -32.82967 -31.87802 -30.61571 -28.95793 -27.46305 -26.99847 -25.27866 -24.45889 -23.10072 -21.07057 -20.53311 -19.34441 -18.69228 -18.20929 -17.25932 -16.62278 -16.31252 -15.96720 -15.57732 -15.35280 -15.23455 -15.06878 -14.61790 -14.40208 -14.09047 -13.81667 -13.71860 -13.46276 -13.41381 -13.07230 -13.02164 -12.98960 -12.79109 -12.61795 -12.55162 -12.25277 -12.11105 -11.89819 -11.74602 -11.62690 -11.54210 -11.42941 -10.94342 -10.62282 -10.21266 -9.54839 -9.01060 -7.95907 -5.25356 0.38403 1.45769 1.47356 1.57381 2.03895 2.27186 2.55014 3.34338 3.40358 3.54999 3.72476 3.84127 3.87921 4.11746 4.20612 4.25177 4.32703 4.34586 4.45099 4.54234 4.58500 4.64525 4.67530 4.75848 4.79695 4.81338 4.84080 4.93700 5.00742 5.03181 5.08651 5.11205 5.16368 5.23951 5.31027 5.33005 5.38031 5.49218 5.51266 5.54671 5.64055 6.25966 6.59789 7.18414 7.31532 8.07943 8.29728 9.28156 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.003397 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.906295 B = 8239.965366 C = 9042.221637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.024 4.024 4 C -0.116 4.116 5 C -0.234 4.234 6 C 0.542 3.458 7 O -0.590 6.590 8 N -0.616 5.616 9 C 0.105 3.895 10 C -0.086 4.086 11 H 0.115 0.885 12 C -0.143 4.143 13 C -0.094 4.094 14 H 0.074 0.926 15 C 0.167 3.833 16 N -0.749 5.749 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.292 1.292 24 H -0.296 1.296 25 C 0.124 3.876 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.156 0.844 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.034 0.966 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.037 0.963 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 -23.823 2.549 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.026 4.026 4 C -0.172 4.172 5 C -0.255 4.255 6 C 0.336 3.664 7 O -0.474 6.474 8 N -0.349 5.349 9 C -0.016 4.016 10 C -0.105 4.105 11 H 0.133 0.867 12 C -0.200 4.200 13 C -0.114 4.114 14 H 0.092 0.908 15 C 0.041 3.959 16 N -0.392 5.392 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.219 1.219 24 H -0.223 1.223 25 C 0.000 4.000 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.174 0.826 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.033 -23.408 2.089 26.873 hybrid contribution 0.776 1.626 -0.521 1.876 sum -12.257 -21.782 1.568 25.043 Atomic orbital electron populations 1.21719 0.93437 1.03061 1.02067 1.20821 0.96927 0.90166 1.04802 1.22880 0.88698 0.96747 0.94244 1.20957 1.02048 0.99300 0.94884 1.22425 1.10289 0.91974 1.00766 1.19039 0.76785 0.88969 0.81639 1.90777 1.54518 1.69613 1.32462 1.48517 1.68215 1.11117 1.07046 1.22397 1.03300 0.96260 0.79668 1.22235 0.97264 0.93893 0.97143 0.86661 1.21843 0.96173 1.01315 1.00650 1.22525 0.99228 0.95924 0.93723 0.90764 1.20776 0.93011 0.87668 0.94435 1.42676 1.51050 1.06797 1.38661 1.19701 1.19198 0.86754 1.11728 0.90240 1.25638 1.00056 1.02740 0.98806 1.69850 1.31913 1.35954 1.24637 0.85038 0.77245 0.79862 0.77412 1.18642 1.21943 1.22327 1.22055 0.97960 0.82422 0.97532 0.92724 0.93001 0.90184 0.89252 0.88946 0.92383 0.90486 0.92316 0.82627 0.89201 0.88807 0.89673 0.94121 0.92207 0.95535 0.94813 0.79831 0.94111 0.94436 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 71.98 0.71 -0.76 16 2 C -0.09 -1.01 6.03 29.85 0.18 -0.83 16 3 C -0.02 -0.46 5.36 -17.61 -0.09 -0.56 16 4 C -0.12 -2.74 8.34 71.24 0.59 -2.15 16 5 C -0.23 -5.08 9.13 23.43 0.21 -4.86 16 6 C 0.54 17.23 7.76 86.57 0.67 17.90 16 7 O -0.59 -24.02 13.36 -4.07 -0.05 -24.08 16 8 N -0.62 -18.23 3.33 -815.08 -2.71 -20.94 16 9 C 0.11 2.03 5.65 86.73 0.49 2.52 16 10 C -0.09 -1.82 3.46 -9.61 -0.03 -1.86 16 11 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 12 C -0.14 -2.84 7.95 71.98 0.57 -2.27 16 13 C -0.09 -3.04 2.93 -9.23 -0.03 -3.07 16 14 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 15 C 0.17 6.59 4.52 86.38 0.39 6.98 16 16 N -0.75 -39.31 5.56 -343.46 -1.91 -41.22 16 17 C -0.24 -13.84 9.99 84.04 0.84 -13.00 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 20 N -0.97 -62.06 13.06 21.65 0.28 -61.77 16 21 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 25 C 0.12 4.49 6.03 87.03 0.53 5.01 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.82 8.13 -2.39 -0.02 0.81 16 30 H 0.09 0.75 7.99 -2.39 -0.02 0.74 16 31 H 0.06 1.67 7.32 -2.39 -0.02 1.65 16 32 H 0.08 1.35 7.99 -2.39 -0.02 1.33 16 33 H 0.06 1.69 7.14 -2.39 -0.02 1.67 16 34 H 0.16 2.27 7.33 -2.91 -0.02 2.25 16 35 H 0.09 1.36 8.13 -2.39 -0.02 1.34 16 36 H 0.09 1.37 7.84 -2.38 -0.02 1.36 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.04 0.95 7.48 -2.38 -0.02 0.93 16 39 H 0.06 1.30 6.94 -2.39 -0.02 1.28 16 40 H 0.03 1.05 6.97 -2.39 -0.02 1.04 16 41 H 0.03 1.28 8.04 -2.39 -0.02 1.26 16 42 H 0.37 21.13 7.67 -92.71 -0.71 20.42 16 43 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 45 H 0.05 2.09 7.54 -2.39 -0.02 2.07 16 Total: -1.00 -75.49 358.28 3.38 -72.11 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.24 Total: 27.74 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.50 Total: -1.24 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -4.34 Total: -123.94 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -75.49 3.38 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501110726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.195 kcal (2) G-P(sol) polarization free energy of solvation -75.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds