Wall clock time and date at job start Fri Apr 10 2020 17:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46819 * 2 1 4 4 C 1.50702 * 119.99905 * 272.75171 * 3 2 1 5 5 C 1.32991 * 119.99937 * 92.75590 * 3 2 1 6 6 C 1.47100 * 120.00056 * 352.05535 * 5 3 2 7 7 O 1.21610 * 120.00145 * 353.62220 * 6 5 3 8 8 N 1.34773 * 119.99958 * 173.61658 * 6 5 3 9 9 C 1.47488 * 127.03576 * 359.97438 * 8 6 5 10 10 C 1.54000 * 107.08745 * 205.47640 * 9 8 6 11 11 H 1.08989 * 110.33056 * 239.69680 * 10 9 8 12 12 C 1.53010 * 110.32422 * 117.58333 * 10 9 8 13 13 C 1.54624 * 105.04226 * 358.69795 * 10 9 8 14 14 H 1.09001 * 110.74092 * 96.48364 * 13 10 9 15 15 C 1.52997 * 110.73296 * 219.80961 * 13 10 9 16 16 N 1.46507 * 109.46883 * 184.99695 * 15 13 10 17 17 C 1.36934 * 119.99917 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99837 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00089 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99983 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47451 * 89.99764 * 21 19 17 23 23 H 1.48496 * 109.47455 * 209.99826 * 21 19 17 24 24 H 1.48503 * 109.47144 * 330.00101 * 21 19 17 25 25 C 1.48115 * 127.03642 * 180.02562 * 8 6 5 26 26 H 1.09002 * 109.46934 * 299.99950 * 1 2 3 27 27 H 1.09007 * 109.47149 * 60.00136 * 1 2 3 28 28 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47212 * 239.99970 * 2 1 3 30 30 H 1.08999 * 109.47096 * 119.99506 * 2 1 3 31 31 H 1.09001 * 109.47040 * 270.00102 * 4 3 2 32 32 H 1.09000 * 109.46704 * 30.00259 * 4 3 2 33 33 H 1.08991 * 109.46923 * 150.00104 * 4 3 2 34 34 H 1.08000 * 120.00034 * 172.06066 * 5 3 2 35 35 H 1.09007 * 109.91219 * 86.11849 * 9 8 6 36 36 H 1.09002 * 109.91278 * 324.84462 * 9 8 6 37 37 H 1.09000 * 109.46516 * 61.45533 * 12 10 9 38 38 H 1.08993 * 109.47070 * 181.45569 * 12 10 9 39 39 H 1.09003 * 109.46973 * 301.45735 * 12 10 9 40 40 H 1.08998 * 109.47688 * 304.99754 * 15 13 10 41 41 H 1.08995 * 109.47637 * 65.00039 * 15 13 10 42 42 H 0.97001 * 119.99896 * 0.02562 * 16 15 13 43 43 H 0.97000 * 119.99872 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.66638 * 259.11766 * 25 8 6 45 45 H 1.09004 * 110.66099 * 22.06466 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2244 2.1522 -1.3036 5 6 2.3061 2.0294 1.1504 6 6 1.9562 1.3842 2.4252 7 8 1.3141 0.3514 2.4279 8 7 2.3472 1.9376 3.5902 9 6 3.1261 3.1775 3.7675 10 6 3.8558 3.0641 5.1189 11 1 3.5559 3.8766 5.7805 12 6 5.3712 3.0836 4.9079 13 6 3.4122 1.7023 5.7015 14 1 4.1482 0.9295 5.4801 15 6 3.1740 1.8099 7.2090 16 7 2.8720 0.4829 7.7516 17 6 2.6220 0.3309 9.0893 18 1 2.6470 1.1892 9.7443 19 6 2.3353 -0.9263 9.6033 20 7 2.0954 -1.0726 10.8891 21 14 2.2912 -2.4108 8.4702 22 1 3.6434 -3.0208 8.4006 23 1 1.3251 -3.4076 8.9975 24 1 1.8703 -1.9841 7.1115 25 6 2.0837 1.4246 4.9545 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.2384 1.9864 -1.6673 32 1 1.5097 1.7800 -2.0376 33 1 2.0638 3.2190 -1.1488 34 1 2.7854 2.9972 1.1487 35 1 2.4569 4.0379 3.7780 36 1 3.8521 3.2784 2.9607 37 1 5.6619 4.0287 4.4491 38 1 5.8733 2.9767 5.8693 39 1 5.6577 2.2593 4.2547 40 1 4.0684 2.2045 7.6910 41 1 2.3345 2.4791 7.3975 42 1 2.8498 -0.2880 7.1633 43 1 1.8947 -1.9511 11.2482 44 1 1.2609 1.9690 5.4179 45 1 1.8700 0.3560 4.9289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501110728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:40 Heat of formation + Delta-G solvation = -13.150541 kcal Electronic energy + Delta-G solvation = -22398.836537 eV Core-core repulsion = 19223.743650 eV Total energy + Delta-G solvation = -3175.092887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23542 -38.41811 -35.91161 -34.80676 -32.88859 -31.53666 -31.03564 -29.70039 -28.22351 -26.41122 -25.59506 -23.73963 -22.89109 -21.21136 -20.24142 -20.02912 -18.19114 -17.54015 -17.10897 -16.00593 -15.31689 -14.96080 -14.73449 -14.43624 -14.08794 -13.85900 -13.69915 -13.43937 -13.20966 -13.01746 -12.93245 -12.68643 -12.58318 -12.42810 -12.16458 -12.03899 -11.89406 -11.50818 -11.36412 -11.17760 -10.91198 -10.86254 -10.59630 -10.48485 -10.36094 -10.09076 -9.56945 -9.45928 -9.27730 -8.88316 -8.52027 -7.21932 -5.75115 -3.10747 1.23712 3.04809 3.27959 3.41479 3.46171 3.49302 4.38586 4.53906 4.55427 4.62198 4.70406 4.83033 4.94890 5.14439 5.19418 5.23733 5.26695 5.41728 5.42919 5.44560 5.46312 5.50671 5.55763 5.56655 5.68381 5.72291 5.75677 5.81764 5.95793 5.99938 6.07460 6.12527 6.15890 6.22064 6.24063 6.33571 6.43504 6.52475 6.63772 6.74725 7.65108 8.00407 8.26645 8.43891 9.22772 9.95435 10.14769 11.43242 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.004279 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.244770 B = 6542.206633 C = 7719.932829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C -0.031 4.031 4 C -0.126 4.126 5 C -0.228 4.228 6 C 0.560 3.440 7 O -0.536 6.536 8 N -0.619 5.619 9 C 0.106 3.894 10 C -0.100 4.100 11 H 0.089 0.911 12 C -0.141 4.141 13 C -0.106 4.106 14 H 0.082 0.918 15 C 0.169 3.831 16 N -0.756 5.756 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.934 5.934 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.112 3.888 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 10.574 -24.387 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C -0.033 4.033 4 C -0.182 4.182 5 C -0.248 4.248 6 C 0.352 3.648 7 O -0.416 6.416 8 N -0.352 5.352 9 C -0.017 4.017 10 C -0.120 4.120 11 H 0.108 0.892 12 C -0.199 4.199 13 C -0.126 4.126 14 H 0.101 0.899 15 C 0.042 3.958 16 N -0.402 5.402 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.582 5.582 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.010 4.010 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.780 10.052 -24.225 26.375 hybrid contribution 0.039 -0.952 -0.604 1.128 sum 2.819 9.100 -24.829 26.594 Atomic orbital electron populations 1.21521 0.94202 1.01726 1.01362 1.21031 0.97191 0.92534 1.03626 1.22567 0.90552 0.95807 0.94355 1.20980 1.02673 1.00001 0.94562 1.22354 1.08233 1.02404 0.91843 1.18179 0.79575 0.83929 0.83075 1.90739 1.40496 1.23692 1.86667 1.48763 1.54380 1.25970 1.06112 1.22211 0.94516 0.86960 0.98031 1.22083 0.95840 0.98593 0.95436 0.89248 1.21838 0.94404 1.01343 1.02298 1.22623 0.96702 0.96657 0.96618 0.89946 1.20608 0.98112 0.88665 0.88450 1.42734 1.86621 1.03920 1.06938 1.19043 1.40120 0.95279 0.82998 0.89189 1.24661 1.01607 0.97161 0.95606 1.69700 1.54508 1.22917 1.11108 0.86579 0.77650 0.83882 0.80659 1.21081 1.21664 1.20179 1.22558 0.97403 1.01074 0.79922 0.91774 0.93861 0.92687 0.92246 0.87813 0.90555 0.90907 0.91178 0.85854 0.91608 0.90904 0.92679 0.91777 0.92713 0.95037 0.95262 0.80621 0.93056 0.90614 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.45 37.16 0.35 -1.12 16 2 C -0.11 -1.20 5.31 -27.88 -0.15 -1.35 16 3 C -0.03 -0.31 5.36 -101.16 -0.54 -0.85 16 4 C -0.13 -0.83 10.04 36.01 0.36 -0.46 16 5 C -0.23 -2.50 9.06 -37.81 -0.34 -2.84 16 6 C 0.56 8.15 7.68 -12.67 -0.10 8.05 16 7 O -0.54 -9.40 11.89 5.27 0.06 -9.34 16 8 N -0.62 -8.52 3.29 -171.16 -0.56 -9.08 16 9 C 0.11 1.10 6.25 -2.98 -0.02 1.08 16 10 C -0.10 -1.11 3.17 -89.24 -0.28 -1.39 16 11 H 0.09 0.94 7.85 -51.94 -0.41 0.53 16 12 C -0.14 -1.38 8.89 37.16 0.33 -1.05 16 13 C -0.11 -1.59 2.62 -88.75 -0.23 -1.82 16 14 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 15 C 0.17 3.15 5.58 -4.04 -0.02 3.13 16 16 N -0.76 -18.05 5.33 -59.91 -0.32 -18.37 16 17 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.74 13.97 55.49 0.78 -28.96 16 21 Si 0.88 22.75 27.74 -169.99 -4.71 18.04 16 22 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 24 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 25 C 0.11 1.78 6.45 -2.14 -0.01 1.77 16 26 H 0.06 0.87 6.91 -51.93 -0.36 0.51 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 30 H 0.10 1.47 5.57 -51.93 -0.29 1.18 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.12 1.06 7.05 -52.49 -0.37 0.69 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.63 6.79 -51.93 -0.35 0.27 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.55 7.99 -51.93 -0.42 0.14 16 42 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16 43 H 0.26 7.86 8.31 -40.82 -0.34 7.53 16 44 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 45 H 0.08 1.54 7.85 -51.93 -0.41 1.14 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -33.25 355.94 -8.19 -41.44 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.88 Total: 4.85 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.91 Total: -3.94 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.11 Total: -56.41 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.06 Total: -9.34 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.25 -8.19 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501110728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.289 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds