Wall clock time and date at job start Fri Apr 10 2020 17:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46819 * 2 1 4 4 C 1.50702 * 119.99905 * 272.75171 * 3 2 1 5 5 C 1.32991 * 119.99937 * 92.75590 * 3 2 1 6 6 C 1.47100 * 120.00056 * 352.05535 * 5 3 2 7 7 O 1.21610 * 120.00145 * 353.62220 * 6 5 3 8 8 N 1.34773 * 119.99958 * 173.61658 * 6 5 3 9 9 C 1.47488 * 127.03576 * 359.97438 * 8 6 5 10 10 C 1.54000 * 107.08745 * 205.47640 * 9 8 6 11 11 H 1.08989 * 110.33056 * 239.69680 * 10 9 8 12 12 C 1.53010 * 110.32422 * 117.58333 * 10 9 8 13 13 C 1.54624 * 105.04226 * 358.69795 * 10 9 8 14 14 H 1.09001 * 110.74092 * 96.48364 * 13 10 9 15 15 C 1.52997 * 110.73296 * 219.80961 * 13 10 9 16 16 N 1.46507 * 109.46883 * 184.99695 * 15 13 10 17 17 C 1.36934 * 119.99917 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99837 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00089 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99983 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47451 * 89.99764 * 21 19 17 23 23 H 1.48496 * 109.47455 * 209.99826 * 21 19 17 24 24 H 1.48503 * 109.47144 * 330.00101 * 21 19 17 25 25 C 1.48115 * 127.03642 * 180.02562 * 8 6 5 26 26 H 1.09002 * 109.46934 * 299.99950 * 1 2 3 27 27 H 1.09007 * 109.47149 * 60.00136 * 1 2 3 28 28 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47212 * 239.99970 * 2 1 3 30 30 H 1.08999 * 109.47096 * 119.99506 * 2 1 3 31 31 H 1.09001 * 109.47040 * 270.00102 * 4 3 2 32 32 H 1.09000 * 109.46704 * 30.00259 * 4 3 2 33 33 H 1.08991 * 109.46923 * 150.00104 * 4 3 2 34 34 H 1.08000 * 120.00034 * 172.06066 * 5 3 2 35 35 H 1.09007 * 109.91219 * 86.11849 * 9 8 6 36 36 H 1.09002 * 109.91278 * 324.84462 * 9 8 6 37 37 H 1.09000 * 109.46516 * 61.45533 * 12 10 9 38 38 H 1.08993 * 109.47070 * 181.45569 * 12 10 9 39 39 H 1.09003 * 109.46973 * 301.45735 * 12 10 9 40 40 H 1.08998 * 109.47688 * 304.99754 * 15 13 10 41 41 H 1.08995 * 109.47637 * 65.00039 * 15 13 10 42 42 H 0.97001 * 119.99896 * 0.02562 * 16 15 13 43 43 H 0.97000 * 119.99872 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.66638 * 259.11766 * 25 8 6 45 45 H 1.09004 * 110.66099 * 22.06466 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2244 2.1522 -1.3036 5 6 2.3061 2.0294 1.1504 6 6 1.9562 1.3842 2.4252 7 8 1.3141 0.3514 2.4279 8 7 2.3472 1.9376 3.5902 9 6 3.1261 3.1775 3.7675 10 6 3.8558 3.0641 5.1189 11 1 3.5559 3.8766 5.7805 12 6 5.3712 3.0836 4.9079 13 6 3.4122 1.7023 5.7015 14 1 4.1482 0.9295 5.4801 15 6 3.1740 1.8099 7.2090 16 7 2.8720 0.4829 7.7516 17 6 2.6220 0.3309 9.0893 18 1 2.6470 1.1892 9.7443 19 6 2.3353 -0.9263 9.6033 20 7 2.0954 -1.0726 10.8891 21 14 2.2912 -2.4108 8.4702 22 1 3.6434 -3.0208 8.4006 23 1 1.3251 -3.4076 8.9975 24 1 1.8703 -1.9841 7.1115 25 6 2.0837 1.4246 4.9545 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.2384 1.9864 -1.6673 32 1 1.5097 1.7800 -2.0376 33 1 2.0638 3.2190 -1.1488 34 1 2.7854 2.9972 1.1487 35 1 2.4569 4.0379 3.7780 36 1 3.8521 3.2784 2.9607 37 1 5.6619 4.0287 4.4491 38 1 5.8733 2.9767 5.8693 39 1 5.6577 2.2593 4.2547 40 1 4.0684 2.2045 7.6910 41 1 2.3345 2.4791 7.3975 42 1 2.8498 -0.2880 7.1633 43 1 1.8947 -1.9511 11.2482 44 1 1.2609 1.9690 5.4179 45 1 1.8700 0.3560 4.9289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501110728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:39 Heat of formation + Delta-G solvation = -34.137493 kcal Electronic energy + Delta-G solvation = -22399.746600 eV Core-core repulsion = 19223.743650 eV Total energy + Delta-G solvation = -3176.002949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.29637 -39.49917 -36.89211 -36.49994 -34.23234 -33.29042 -31.93060 -31.06031 -29.11654 -27.25637 -27.03521 -24.88769 -24.34758 -22.68065 -21.23476 -21.16910 -19.74387 -18.91138 -18.15142 -17.20391 -16.57003 -16.33355 -15.93741 -15.86343 -15.34025 -15.05680 -14.82538 -14.66148 -14.31063 -14.15812 -13.87273 -13.76831 -13.70996 -13.56397 -13.30601 -13.10084 -12.90687 -12.84978 -12.79085 -12.50301 -12.12496 -11.99036 -11.90231 -11.81731 -11.72774 -11.55808 -11.52570 -11.01278 -10.51215 -10.10719 -9.56120 -9.32314 -8.06433 -5.38787 0.39781 1.33873 1.35627 1.42332 2.01922 2.28489 2.43600 3.24879 3.33817 3.57298 3.69461 3.81451 3.82619 3.97717 4.19115 4.24379 4.33130 4.43614 4.47425 4.49729 4.54204 4.64082 4.65764 4.71701 4.78626 4.82813 4.84918 4.87715 4.93341 5.03287 5.04652 5.12995 5.18946 5.21705 5.30734 5.34329 5.38769 5.50437 5.54151 5.72166 5.73329 6.18325 6.63420 7.04356 7.20934 7.81445 7.98393 9.15201 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.004279 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.244770 B = 6542.206633 C = 7719.932829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.111 4.111 3 C -0.021 4.021 4 C -0.122 4.122 5 C -0.240 4.240 6 C 0.547 3.453 7 O -0.579 6.579 8 N -0.621 5.621 9 C 0.106 3.894 10 C -0.092 4.092 11 H 0.101 0.899 12 C -0.138 4.138 13 C -0.096 4.096 14 H 0.073 0.927 15 C 0.167 3.833 16 N -0.762 5.762 17 C -0.231 4.231 18 H 0.063 0.937 19 C -0.059 4.059 20 N -0.981 5.981 21 Si 0.947 3.053 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.264 1.264 25 C 0.113 3.887 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.362 0.638 43 H 0.258 0.742 44 H 0.070 0.930 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 12.417 -27.958 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C -0.023 4.023 4 C -0.178 4.178 5 C -0.260 4.260 6 C 0.341 3.659 7 O -0.462 6.462 8 N -0.353 5.353 9 C -0.015 4.015 10 C -0.111 4.111 11 H 0.119 0.881 12 C -0.195 4.195 13 C -0.116 4.116 14 H 0.092 0.908 15 C 0.041 3.959 16 N -0.407 5.407 17 C -0.362 4.362 18 H 0.081 0.919 19 C -0.251 4.251 20 N -0.632 5.632 21 Si 0.775 3.225 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.189 1.189 25 C -0.010 4.010 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.195 0.805 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.024 11.954 -27.837 30.561 hybrid contribution -0.356 -1.466 0.506 1.591 sum 3.668 10.489 -27.330 29.503 Atomic orbital electron populations 1.21465 0.94418 1.01482 1.01027 1.20998 0.97070 0.93850 1.02921 1.22880 0.88602 0.94936 0.95887 1.21049 1.03924 1.00367 0.92443 1.22405 1.09918 1.03677 0.89995 1.18956 0.79017 0.83604 0.84328 1.90729 1.42471 1.25685 1.87345 1.48846 1.54599 1.26955 1.04939 1.22441 0.95023 0.85868 0.98218 1.22093 0.97121 0.96038 0.95876 0.88093 1.21821 0.92860 1.02789 1.02030 1.22450 0.96094 0.99215 0.93863 0.90825 1.20791 0.98077 0.86099 0.90940 1.42818 1.86454 1.06146 1.05275 1.19072 1.38128 0.94303 0.84694 0.91871 1.25403 1.02471 1.00225 0.97016 1.69858 1.56716 1.23517 1.13129 0.85522 0.77776 0.80083 0.79077 1.20194 1.22014 1.18913 1.22344 0.97757 0.99007 0.81912 0.94633 0.91429 0.93026 0.90127 0.91273 0.88849 0.89942 0.89648 0.82763 0.89592 0.88187 0.89772 0.92713 0.93099 0.94484 0.95071 0.80529 0.93283 0.91186 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.45 71.98 0.68 -2.11 16 2 C -0.11 -2.40 5.31 29.85 0.16 -2.24 16 3 C -0.02 -0.37 5.36 -17.61 -0.09 -0.46 16 4 C -0.12 -1.08 10.04 71.24 0.72 -0.36 16 5 C -0.24 -4.66 9.06 23.43 0.21 -4.45 16 6 C 0.55 15.65 7.68 86.57 0.66 16.31 16 7 O -0.58 -21.13 11.89 -4.06 -0.05 -21.18 16 8 N -0.62 -16.42 3.29 -813.69 -2.68 -19.10 16 9 C 0.11 1.84 6.25 86.53 0.54 2.38 16 10 C -0.09 -1.79 3.17 -9.90 -0.03 -1.82 16 11 H 0.10 1.79 7.85 -2.39 -0.02 1.77 16 12 C -0.14 -2.24 8.89 71.99 0.64 -1.60 16 13 C -0.10 -2.81 2.62 -9.58 -0.03 -2.84 16 14 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 15 C 0.17 6.18 5.58 86.38 0.48 6.66 16 16 N -0.76 -36.62 5.33 -343.45 -1.83 -38.45 16 17 C -0.23 -13.46 10.47 84.03 0.88 -12.58 16 18 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 19 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 20 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 21 Si 0.95 47.99 27.74 68.60 1.90 49.89 16 22 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 24 H -0.26 -12.68 6.52 99.48 0.65 -12.03 16 25 C 0.11 3.62 6.45 86.73 0.56 4.18 16 26 H 0.03 0.98 6.91 -2.39 -0.02 0.96 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.07 2.02 5.57 -2.39 -0.01 2.01 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 34 H 0.15 1.96 7.05 -2.91 -0.02 1.94 16 35 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.10 1.24 6.79 -2.39 -0.02 1.23 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 42 H 0.36 17.24 5.53 -92.71 -0.51 16.72 16 43 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 44 H 0.07 2.28 7.94 -2.39 -0.02 2.26 16 45 H 0.05 1.89 7.85 -2.39 -0.02 1.87 16 Total: -1.00 -75.81 355.94 3.88 -71.93 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.38 Total: 22.86 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.85 Total: -2.08 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.20 Total: -121.43 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.90 Total: 49.89 kcal Total: -75.81 3.88 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501110728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.796 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds