Wall clock time and date at job start Fri Apr 10 2020 17:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99969 * 2 1 4 4 C 1.53007 * 109.47143 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47441 * 240.00087 * 3 2 1 6 6 C 1.50701 * 109.46922 * 119.99761 * 3 2 1 7 7 O 1.21281 * 120.00188 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99983 * 179.97438 * 6 3 2 9 9 C 1.46492 * 120.00083 * 180.02562 * 8 6 3 10 10 H 1.09000 * 110.54516 * 323.84543 * 9 8 6 11 11 C 1.54269 * 110.48412 * 86.45961 * 9 8 6 12 12 C 1.53875 * 106.59701 * 142.28966 * 11 9 8 13 13 C 1.54260 * 106.60118 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.48363 * 95.20604 * 13 12 11 15 15 C 1.53004 * 110.49056 * 217.71334 * 13 12 11 16 16 N 1.46504 * 109.46932 * 291.76188 * 15 13 12 17 17 C 1.36934 * 119.99567 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99987 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00079 * 21 19 17 25 25 C 1.54890 * 104.31502 * 336.46089 * 13 12 11 26 26 H 1.07999 * 120.00233 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00125 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00282 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 4 3 2 30 30 H 1.08991 * 109.46976 * 300.00048 * 4 3 2 31 31 H 1.08999 * 109.46952 * 59.99812 * 4 3 2 32 32 H 1.08993 * 109.46680 * 300.00420 * 5 3 2 33 33 H 1.09000 * 109.46709 * 59.99608 * 5 3 2 34 34 H 1.08994 * 109.47211 * 179.97438 * 5 3 2 35 35 H 0.97002 * 119.99543 * 0.02562 * 8 6 3 36 36 H 1.09005 * 110.03070 * 23.00499 * 11 9 8 37 37 H 1.08998 * 110.07195 * 261.59265 * 11 9 8 38 38 H 1.09008 * 110.03199 * 240.71455 * 12 11 9 39 39 H 1.08997 * 110.07518 * 119.31277 * 12 11 9 40 40 H 1.08998 * 109.47524 * 171.75832 * 15 13 12 41 41 H 1.08997 * 109.47093 * 51.75733 * 15 13 12 42 42 H 0.97000 * 119.99825 * 359.97438 * 16 15 13 43 43 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 44 44 H 1.08996 * 110.75927 * 156.18761 * 25 13 12 45 45 H 1.09006 * 110.75377 * 279.55778 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9431 1.3863 -1.2493 6 6 2.9298 1.3849 1.2305 7 8 2.9352 0.4717 2.0286 8 7 3.6994 2.4707 1.4436 9 6 4.5420 2.5481 2.6394 10 1 4.0408 2.0877 3.4909 11 6 5.9047 1.8714 2.3844 12 6 6.9606 2.7214 3.1126 13 6 6.2029 3.8853 3.7841 14 1 5.9718 3.6420 4.8212 15 6 7.0244 5.1738 3.7081 16 7 8.2113 5.0471 4.5576 17 6 9.1019 6.0833 4.6485 18 1 8.9296 6.9938 4.0937 19 6 10.2261 5.9635 5.4538 20 7 10.4359 4.8540 6.1304 21 14 11.4415 7.3767 5.5774 22 1 12.5467 7.0003 6.4950 23 1 11.9943 7.6732 4.2314 24 1 10.7493 8.5801 6.1045 25 6 4.9009 4.0228 2.9564 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.6142 3.4121 0.0011 30 1 0.4422 2.4105 -0.8890 31 1 0.4429 2.4101 0.8908 32 1 3.6513 0.5578 -1.2493 33 1 2.3164 1.3285 -2.1392 34 1 3.4877 2.3304 -1.2495 35 1 3.6953 3.2009 0.8050 36 1 6.1160 1.8487 1.3153 37 1 5.8999 0.8579 2.7854 38 1 7.6845 3.1112 2.3968 39 1 7.4685 2.1211 3.8674 40 1 6.4187 6.0118 4.0528 41 1 7.3325 5.3480 2.6772 42 1 8.3662 4.2292 5.0555 43 1 9.8050 4.1200 6.0659 44 1 4.1159 4.4951 3.5469 45 1 5.0841 4.5810 2.0382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507410541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:58 Heat of formation + Delta-G solvation = -27.303528 kcal Electronic energy + Delta-G solvation = -22022.149609 eV Core-core repulsion = 18846.443002 eV Total energy + Delta-G solvation = -3175.706606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54239 -38.39835 -36.48655 -35.03709 -33.63408 -31.41344 -30.71803 -28.73566 -27.83787 -27.54570 -24.53195 -23.88928 -22.40058 -21.46528 -20.64027 -19.34077 -18.76114 -17.24347 -17.16944 -16.61668 -15.81985 -15.41437 -15.13545 -14.71886 -14.24428 -14.07963 -13.71833 -13.37134 -13.26621 -13.17299 -12.82886 -12.72525 -12.50910 -12.22530 -12.13146 -11.86752 -11.67160 -11.45415 -11.07950 -10.95382 -10.77230 -10.59544 -10.51947 -10.39873 -10.10222 -10.00017 -9.95431 -9.58358 -9.16225 -9.09796 -8.85298 -6.97112 -6.08132 -3.07194 1.94784 2.49618 3.09682 3.52390 3.56292 3.73873 4.20582 4.35956 4.55097 4.60167 4.66890 4.75673 4.79106 4.99479 5.04966 5.12196 5.26932 5.32600 5.36085 5.42068 5.54295 5.55694 5.57969 5.60997 5.66742 5.72676 5.77386 5.79927 5.86853 6.02662 6.08961 6.15545 6.26911 6.31498 6.37938 6.44386 6.53440 6.54696 6.74214 6.86426 7.36757 7.82517 8.09321 8.78578 9.26602 10.12966 10.28468 11.40692 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048288 B = 0.002728 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.719914 B =10260.233239 C =10431.200172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.057 4.057 4 C -0.144 4.144 5 C -0.137 4.137 6 C 0.524 3.476 7 O -0.536 6.536 8 N -0.720 5.720 9 C 0.140 3.860 10 H 0.091 0.909 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.097 4.097 14 H 0.075 0.925 15 C 0.167 3.833 16 N -0.743 5.743 17 C -0.331 4.331 18 H 0.063 0.937 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.080 2.920 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.296 1.296 25 C -0.120 4.120 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.367 0.633 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.899 -6.360 -15.774 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.140 4.140 3 C -0.060 4.060 4 C -0.201 4.201 5 C -0.194 4.194 6 C 0.310 3.690 7 O -0.412 6.412 8 N -0.371 5.371 9 C 0.035 3.965 10 H 0.109 0.891 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.116 4.116 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.389 5.389 17 C -0.462 4.462 18 H 0.081 0.919 19 C -0.244 4.244 20 N -0.590 5.590 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.158 4.158 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.494 -6.304 -14.605 24.394 hybrid contribution -1.377 -0.411 -0.882 1.686 sum -19.871 -6.715 -15.487 26.072 Atomic orbital electron populations 1.23956 0.95859 1.02225 1.01180 1.22498 0.95621 0.96642 0.99288 1.19928 0.95772 0.95992 0.94352 1.21955 0.98793 0.96323 1.03047 1.21814 0.99247 1.02716 0.95667 1.20419 0.79588 0.82060 0.86935 1.90703 1.66090 1.37601 1.46771 1.46108 1.44647 1.20794 1.25565 1.21943 0.90487 0.96640 0.87382 0.89058 1.22537 0.94213 0.99554 1.00741 1.22108 0.97263 0.96064 0.99626 1.22115 0.93918 0.96461 0.99112 0.90632 1.20604 0.87998 0.93259 0.94148 1.42360 1.24163 1.17595 1.54773 1.20031 1.03887 0.95581 1.26693 0.91869 1.25782 0.98731 1.03170 0.96760 1.70881 1.39019 1.05163 1.43984 0.83238 0.75949 0.73889 0.75802 1.21030 1.22303 1.22300 1.22754 0.97931 0.94494 1.00640 0.88249 0.87932 0.86872 0.91766 0.91001 0.91675 0.91782 0.91197 0.91738 0.76678 0.91811 0.91657 0.91180 0.91720 0.96441 0.96289 0.79975 0.93398 0.91019 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 13.70 29.02 0.40 -1.11 16 2 C -0.12 -1.11 8.00 -36.02 -0.29 -1.40 16 3 C -0.06 -0.48 0.84 -156.81 -0.13 -0.61 16 4 C -0.14 -0.92 7.02 37.16 0.26 -0.66 16 5 C -0.14 -0.91 8.35 37.16 0.31 -0.60 16 6 C 0.52 6.09 6.47 -10.98 -0.07 6.02 16 7 O -0.54 -8.51 15.75 5.56 0.09 -8.42 16 8 N -0.72 -7.31 4.90 -52.12 -0.26 -7.57 16 9 C 0.14 1.71 3.15 -66.19 -0.21 1.51 16 10 H 0.09 1.27 7.67 -51.93 -0.40 0.87 16 11 C -0.13 -1.75 6.53 -25.61 -0.17 -1.92 16 12 C -0.11 -1.75 6.14 -25.62 -0.16 -1.91 16 13 C -0.10 -1.54 2.90 -88.96 -0.26 -1.80 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.17 3.38 5.58 -4.04 -0.02 3.36 16 16 N -0.74 -19.02 5.46 -59.91 -0.33 -19.35 16 17 C -0.33 -9.51 9.99 -15.06 -0.15 -9.66 16 18 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 20 N -0.94 -29.70 13.70 55.49 0.76 -28.94 16 21 Si 1.08 26.22 29.92 -169.99 -5.09 21.13 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.12 -1.46 5.94 -24.65 -0.15 -1.61 16 26 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 27 H 0.10 0.67 5.69 -52.48 -0.30 0.37 16 28 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 30 H 0.07 0.36 7.49 -51.93 -0.39 -0.03 16 31 H 0.06 0.47 7.50 -51.93 -0.39 0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 35 H 0.40 3.02 7.37 -40.82 -0.30 2.72 16 36 H 0.06 0.80 8.04 -51.93 -0.42 0.39 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.18 7.74 -51.92 -0.40 0.78 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.39 8.01 -51.93 -0.42 -0.02 16 42 H 0.37 9.60 6.41 -40.82 -0.26 9.34 16 43 H 0.25 7.89 6.77 -40.82 -0.28 7.61 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -34.12 357.86 -7.92 -42.04 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.76 Total: 7.58 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.73 Total: -11.88 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.18 Total: -55.85 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.09 Total: 21.13 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.12 -7.92 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507410541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.735 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds