Wall clock time and date at job start Fri Apr 10 2020 17:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99969 * 2 1 4 4 C 1.53007 * 109.47143 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47441 * 240.00087 * 3 2 1 6 6 C 1.50701 * 109.46922 * 119.99761 * 3 2 1 7 7 O 1.21281 * 120.00188 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99983 * 179.97438 * 6 3 2 9 9 C 1.46492 * 120.00083 * 180.02562 * 8 6 3 10 10 H 1.09000 * 110.54516 * 323.84543 * 9 8 6 11 11 C 1.54269 * 110.48412 * 86.45961 * 9 8 6 12 12 C 1.53875 * 106.59701 * 142.28966 * 11 9 8 13 13 C 1.54260 * 106.60118 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.48363 * 95.20604 * 13 12 11 15 15 C 1.53004 * 110.49056 * 217.71334 * 13 12 11 16 16 N 1.46504 * 109.46932 * 291.76188 * 15 13 12 17 17 C 1.36934 * 119.99567 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99987 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00079 * 21 19 17 25 25 C 1.54890 * 104.31502 * 336.46089 * 13 12 11 26 26 H 1.07999 * 120.00233 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00125 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00282 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 4 3 2 30 30 H 1.08991 * 109.46976 * 300.00048 * 4 3 2 31 31 H 1.08999 * 109.46952 * 59.99812 * 4 3 2 32 32 H 1.08993 * 109.46680 * 300.00420 * 5 3 2 33 33 H 1.09000 * 109.46709 * 59.99608 * 5 3 2 34 34 H 1.08994 * 109.47211 * 179.97438 * 5 3 2 35 35 H 0.97002 * 119.99543 * 0.02562 * 8 6 3 36 36 H 1.09005 * 110.03070 * 23.00499 * 11 9 8 37 37 H 1.08998 * 110.07195 * 261.59265 * 11 9 8 38 38 H 1.09008 * 110.03199 * 240.71455 * 12 11 9 39 39 H 1.08997 * 110.07518 * 119.31277 * 12 11 9 40 40 H 1.08998 * 109.47524 * 171.75832 * 15 13 12 41 41 H 1.08997 * 109.47093 * 51.75733 * 15 13 12 42 42 H 0.97000 * 119.99825 * 359.97438 * 16 15 13 43 43 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 44 44 H 1.08996 * 110.75927 * 156.18761 * 25 13 12 45 45 H 1.09006 * 110.75377 * 279.55778 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9431 1.3863 -1.2493 6 6 2.9298 1.3849 1.2305 7 8 2.9352 0.4717 2.0286 8 7 3.6994 2.4707 1.4436 9 6 4.5420 2.5481 2.6394 10 1 4.0408 2.0877 3.4909 11 6 5.9047 1.8714 2.3844 12 6 6.9606 2.7214 3.1126 13 6 6.2029 3.8853 3.7841 14 1 5.9718 3.6420 4.8212 15 6 7.0244 5.1738 3.7081 16 7 8.2113 5.0471 4.5576 17 6 9.1019 6.0833 4.6485 18 1 8.9296 6.9938 4.0937 19 6 10.2261 5.9635 5.4538 20 7 10.4359 4.8540 6.1304 21 14 11.4415 7.3767 5.5774 22 1 12.5467 7.0003 6.4950 23 1 11.9943 7.6732 4.2314 24 1 10.7493 8.5801 6.1045 25 6 4.9009 4.0228 2.9564 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.6142 3.4121 0.0011 30 1 0.4422 2.4105 -0.8890 31 1 0.4429 2.4101 0.8908 32 1 3.6513 0.5578 -1.2493 33 1 2.3164 1.3285 -2.1392 34 1 3.4877 2.3304 -1.2495 35 1 3.6953 3.2009 0.8050 36 1 6.1160 1.8487 1.3153 37 1 5.8999 0.8579 2.7854 38 1 7.6845 3.1112 2.3968 39 1 7.4685 2.1211 3.8674 40 1 6.4187 6.0118 4.0528 41 1 7.3325 5.3480 2.6772 42 1 8.3662 4.2292 5.0555 43 1 9.8050 4.1200 6.0659 44 1 4.1159 4.4951 3.5469 45 1 5.0841 4.5810 2.0382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507410541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:57 Heat of formation + Delta-G solvation = -49.380880 kcal Electronic energy + Delta-G solvation = -22023.106955 eV Core-core repulsion = 18846.443002 eV Total energy + Delta-G solvation = -3176.663952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44078 -39.55717 -37.32480 -36.71487 -34.97758 -32.96353 -31.66402 -30.10090 -28.86853 -28.29921 -26.06422 -24.93563 -24.19989 -22.33430 -21.73364 -20.59673 -19.58766 -19.27818 -17.93649 -17.67484 -16.89194 -16.73224 -16.15783 -15.77553 -15.73836 -15.26115 -15.12905 -14.77717 -14.72229 -14.38761 -13.57014 -13.42203 -13.32025 -13.17589 -13.08258 -12.77778 -12.68718 -12.59371 -12.59188 -12.13129 -12.11173 -11.88611 -11.85570 -11.77657 -11.65978 -11.43457 -11.21459 -10.91658 -10.83174 -10.29341 -10.10098 -9.10832 -8.40777 -5.34107 1.29370 1.58088 1.60767 1.68619 1.84960 2.24163 2.71986 3.38958 3.46267 3.51884 3.59011 3.72813 3.82267 3.98758 4.01036 4.11218 4.28810 4.39999 4.42360 4.44788 4.49383 4.56662 4.68688 4.69535 4.76870 4.82551 4.85139 4.86677 4.93314 5.05830 5.06466 5.08081 5.13017 5.24286 5.27916 5.28401 5.42383 5.53603 5.58145 5.69220 5.81563 6.48542 6.54833 7.09558 7.23995 8.00461 8.11686 9.11470 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048288 B = 0.002728 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.719914 B =10260.233239 C =10431.200172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C -0.051 4.051 4 C -0.143 4.143 5 C -0.135 4.135 6 C 0.521 3.479 7 O -0.585 6.585 8 N -0.706 5.706 9 C 0.148 3.852 10 H 0.074 0.926 11 C -0.122 4.122 12 C -0.108 4.108 13 C -0.092 4.092 14 H 0.064 0.936 15 C 0.167 3.833 16 N -0.758 5.758 17 C -0.334 4.334 18 H 0.068 0.932 19 C -0.108 4.108 20 N -0.977 5.977 21 Si 1.129 2.871 22 H -0.294 1.294 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.104 4.104 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.415 0.585 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.020 0.980 41 H 0.024 0.976 42 H 0.360 0.640 43 H 0.243 0.757 44 H 0.086 0.914 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.401 -4.634 -17.792 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.166 4.166 3 C -0.054 4.054 4 C -0.200 4.200 5 C -0.193 4.193 6 C 0.308 3.692 7 O -0.464 6.464 8 N -0.358 5.358 9 C 0.043 3.957 10 H 0.092 0.908 11 C -0.161 4.161 12 C -0.146 4.146 13 C -0.111 4.111 14 H 0.083 0.917 15 C 0.040 3.960 16 N -0.403 5.403 17 C -0.466 4.466 18 H 0.086 0.914 19 C -0.299 4.299 20 N -0.625 5.625 21 Si 0.954 3.046 22 H -0.220 1.220 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.142 4.142 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.042 0.958 42 H 0.191 0.809 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.046 -4.544 -16.684 26.474 hybrid contribution -0.978 -0.989 -0.280 1.419 sum -21.025 -5.533 -16.964 27.576 Atomic orbital electron populations 1.24165 0.95441 1.03324 0.99177 1.22549 0.96281 0.96608 1.01181 1.19935 0.95804 0.96495 0.93157 1.21991 0.98519 0.95913 1.03546 1.21843 0.99109 1.02955 0.95360 1.21104 0.79402 0.81318 0.87368 1.90684 1.67670 1.39375 1.48678 1.45940 1.43699 1.21104 1.25055 1.21666 0.89933 0.96324 0.87824 0.90760 1.22434 0.94171 0.98538 1.00964 1.22015 0.97548 0.96091 0.98974 1.22001 0.95268 0.94431 0.99416 0.91739 1.20777 0.86655 0.95417 0.93110 1.42616 1.25436 1.16692 1.55516 1.20422 1.04177 0.96264 1.25722 0.91416 1.27285 1.01088 1.04733 0.96773 1.70997 1.39482 1.05999 1.46027 0.82615 0.73779 0.71706 0.76529 1.21992 1.20203 1.20247 1.22652 0.95944 0.94625 1.00974 0.87624 0.86371 0.88573 0.90187 0.89116 0.92544 0.93113 0.89524 0.90246 0.74713 0.90610 0.92777 0.92387 0.93550 0.96208 0.95848 0.80860 0.94671 0.89565 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 13.70 67.79 0.93 -1.62 16 2 C -0.15 -2.57 8.00 25.65 0.21 -2.37 16 3 C -0.05 -0.76 0.84 -53.67 -0.05 -0.80 16 4 C -0.14 -1.38 7.02 71.98 0.51 -0.87 16 5 C -0.14 -1.47 8.35 71.98 0.60 -0.87 16 6 C 0.52 11.53 6.47 87.66 0.57 12.09 16 7 O -0.58 -18.75 15.75 -3.03 -0.05 -18.79 16 8 N -0.71 -12.85 4.90 -437.19 -2.14 -14.99 16 9 C 0.15 3.43 3.15 46.13 0.15 3.58 16 10 H 0.07 2.04 7.67 -2.39 -0.02 2.02 16 11 C -0.12 -3.20 6.53 31.32 0.20 -2.99 16 12 C -0.11 -3.39 6.14 31.32 0.19 -3.20 16 13 C -0.09 -2.87 2.90 -9.72 -0.03 -2.90 16 14 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.17 6.59 5.58 86.38 0.48 7.07 16 16 N -0.76 -39.12 5.46 -343.44 -1.88 -41.00 16 17 C -0.33 -19.18 9.99 84.03 0.84 -18.34 16 18 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 19 C -0.11 -6.39 5.50 84.86 0.47 -5.92 16 20 N -0.98 -62.52 13.70 21.65 0.30 -62.22 16 21 Si 1.13 52.39 29.92 68.60 2.05 54.44 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.10 -2.29 5.94 31.94 0.19 -2.10 16 26 H 0.11 1.29 8.06 -2.91 -0.02 1.26 16 27 H 0.12 1.24 5.69 -2.91 -0.02 1.22 16 28 H 0.10 1.95 8.06 -2.91 -0.02 1.92 16 29 H 0.08 0.53 7.56 -2.39 -0.02 0.51 16 30 H 0.09 0.57 7.49 -2.39 -0.02 0.55 16 31 H 0.06 0.66 7.50 -2.39 -0.02 0.65 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.61 7.56 -2.39 -0.02 0.60 16 35 H 0.42 4.86 7.37 -92.71 -0.68 4.17 16 36 H 0.08 1.80 8.04 -2.38 -0.02 1.78 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.95 7.74 -2.38 -0.02 1.93 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.02 0.92 8.01 -2.39 -0.02 0.90 16 42 H 0.36 19.39 6.41 -92.71 -0.59 18.79 16 43 H 0.24 15.54 6.77 -92.70 -0.63 14.91 16 44 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.09 1.75 7.94 -2.38 -0.02 1.73 16 Total: -1.00 -74.95 357.86 3.37 -71.58 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.17 Total: 30.22 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 5.25 Total: -19.24 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -3.72 Total: -118.21 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -74.95 3.37 -71.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507410541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.204 kcal (2) G-P(sol) polarization free energy of solvation -74.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds