Wall clock time and date at job start Fri Apr 10 2020 17:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00096 * 2 1 4 4 C 1.52996 * 109.46948 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47180 * 239.99829 * 3 2 1 6 6 C 1.50707 * 109.46816 * 120.00170 * 3 2 1 7 7 O 1.21278 * 120.00329 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99423 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99854 * 179.97438 * 8 6 3 10 10 H 1.08999 * 110.67205 * 36.77825 * 9 8 6 11 11 C 1.54888 * 110.75561 * 273.54709 * 9 8 6 12 12 C 1.54268 * 104.19568 * 203.55896 * 11 9 8 13 13 C 1.53869 * 106.59835 * 23.60406 * 12 11 9 14 14 H 1.09004 * 110.03892 * 240.66693 * 13 12 11 15 15 C 1.53005 * 110.03475 * 119.28773 * 13 12 11 16 16 N 1.46505 * 109.46904 * 66.45285 * 15 13 12 17 17 C 1.36931 * 119.99788 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.54272 * 106.60162 * 0.02562 * 13 12 11 26 26 H 1.07998 * 119.99498 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99865 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47203 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46931 * 299.99800 * 4 3 2 31 31 H 1.08993 * 109.47346 * 59.99637 * 4 3 2 32 32 H 1.08997 * 109.47156 * 299.99982 * 5 3 2 33 33 H 1.09003 * 109.46896 * 60.00079 * 5 3 2 34 34 H 1.09002 * 109.46872 * 180.02562 * 5 3 2 35 35 H 0.97000 * 120.00369 * 359.97438 * 8 6 3 36 36 H 1.08998 * 110.49246 * 84.87935 * 11 9 8 37 37 H 1.09001 * 110.48639 * 322.23016 * 11 9 8 38 38 H 1.09006 * 110.03098 * 264.32386 * 12 11 9 39 39 H 1.08996 * 110.07557 * 142.91462 * 12 11 9 40 40 H 1.09003 * 109.46946 * 306.46044 * 15 13 12 41 41 H 1.08993 * 109.47679 * 186.45586 * 15 13 12 42 42 H 0.97000 * 119.99792 * 0.02562 * 16 15 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.48400 * 95.06638 * 25 13 12 45 45 H 1.08996 * 110.49037 * 217.70923 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9300 1.3848 1.2305 7 8 2.9347 0.4720 2.0291 8 7 3.6988 2.4710 1.4440 9 6 4.5406 2.5489 2.6405 10 1 4.9529 1.5700 2.8853 11 6 3.7422 3.1230 3.8371 12 6 4.8248 3.7015 4.7716 13 6 6.0519 3.9982 3.8919 14 1 6.9063 3.4139 4.2335 15 6 6.3844 5.4908 3.9424 16 7 6.8261 5.8473 5.2930 17 6 7.1790 7.1390 5.5793 18 1 7.1314 7.8951 4.8096 19 6 7.5920 7.4780 6.8606 20 7 7.6495 6.5566 7.7987 21 14 8.0660 9.2417 7.2531 22 1 7.9163 10.0773 6.0346 23 1 7.1814 9.7652 8.3248 24 1 9.4777 9.2844 7.7117 25 6 5.6720 3.5903 2.4534 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.6143 3.4120 0.0002 30 1 0.4423 2.4104 -0.8892 31 1 0.4430 2.4100 0.8908 32 1 3.6515 0.5576 -1.2492 33 1 2.3165 1.3284 -2.1392 34 1 3.4885 2.3299 -1.2489 35 1 3.6947 3.2012 0.8055 36 1 3.1871 2.3315 4.3404 37 1 3.0668 3.9105 3.5024 38 1 5.0834 2.9725 5.5396 39 1 4.4666 4.6207 5.2351 40 1 5.4971 6.0696 3.6857 41 1 7.1799 5.7102 3.2303 42 1 6.8685 5.1683 5.9844 43 1 7.9385 6.7934 8.6939 44 1 5.3086 4.4533 1.8956 45 1 6.5253 3.1393 1.9469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507410542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:35 Heat of formation + Delta-G solvation = -48.610901 kcal Electronic energy + Delta-G solvation = -22030.626270 eV Core-core repulsion = 18853.995706 eV Total energy + Delta-G solvation = -3176.630563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39098 -39.50963 -37.26788 -36.42903 -34.84255 -32.97475 -31.65362 -30.11769 -28.90120 -28.27555 -26.24968 -24.90265 -23.96822 -22.32321 -21.63059 -20.49001 -19.52498 -19.06228 -17.89769 -17.54639 -16.85231 -16.55097 -16.20327 -15.96276 -15.43414 -15.17740 -15.06077 -14.76910 -14.41712 -14.19522 -13.52099 -13.32054 -13.31755 -13.27128 -13.05135 -12.89973 -12.83155 -12.67659 -12.44494 -12.13377 -12.11955 -12.08520 -11.84996 -11.72233 -11.65059 -11.51378 -11.29042 -10.92201 -10.79994 -10.27510 -10.03055 -8.97902 -7.94438 -5.22873 1.31503 1.47421 1.48391 1.58474 1.64726 2.27969 2.56955 3.39351 3.54882 3.59664 3.66391 3.80310 3.87430 4.02592 4.13832 4.21265 4.36459 4.46344 4.46832 4.50517 4.60065 4.68304 4.71465 4.78903 4.79520 4.88064 4.88969 4.91815 5.00512 5.08318 5.14193 5.17472 5.24649 5.28176 5.30386 5.40234 5.48899 5.52978 5.60254 5.71180 5.83651 6.28281 6.59200 7.28027 7.34205 8.12102 8.34318 9.29634 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041903 B = 0.002787 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.056189 B =10044.469194 C =10171.011520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C -0.051 4.051 4 C -0.143 4.143 5 C -0.134 4.134 6 C 0.521 3.479 7 O -0.585 6.585 8 N -0.706 5.706 9 C 0.147 3.853 10 H 0.076 0.924 11 C -0.122 4.122 12 C -0.112 4.112 13 C -0.090 4.090 14 H 0.064 0.936 15 C 0.160 3.840 16 N -0.747 5.747 17 C -0.242 4.242 18 H 0.077 0.923 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.294 1.294 25 C -0.104 4.104 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.415 0.585 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.092 0.908 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 -9.843 -22.022 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.164 4.164 3 C -0.054 4.054 4 C -0.200 4.200 5 C -0.192 4.192 6 C 0.308 3.692 7 O -0.464 6.464 8 N -0.357 5.357 9 C 0.042 3.958 10 H 0.094 0.906 11 C -0.160 4.160 12 C -0.150 4.150 13 C -0.109 4.109 14 H 0.083 0.917 15 C 0.034 3.966 16 N -0.389 5.389 17 C -0.374 4.374 18 H 0.095 0.905 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.143 4.143 26 H 0.124 0.876 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.297 -10.289 -21.535 27.321 hybrid contribution 0.500 0.684 1.088 1.379 sum -12.796 -9.605 -20.447 25.963 Atomic orbital electron populations 1.24160 0.95547 1.03242 0.99387 1.22562 0.96223 0.96676 1.00987 1.19933 0.95787 0.96335 0.93357 1.21991 0.98592 0.96044 1.03419 1.21839 0.99077 1.03109 0.95146 1.21079 0.79544 0.81243 0.87307 1.90682 1.67138 1.39774 1.48830 1.45889 1.43981 1.20951 1.24885 1.21793 0.90437 0.99068 0.84543 0.90562 1.22620 0.97575 0.99711 0.96124 1.22026 0.95116 1.00181 0.97701 1.21771 0.97677 0.95558 0.95897 0.91732 1.20906 0.96155 0.93330 0.86177 1.42629 1.79886 1.07740 1.08664 1.19698 1.35036 0.87683 0.94946 0.90500 1.25597 1.03593 1.01730 0.96238 1.69834 1.55791 1.33979 1.02682 0.85062 0.76890 0.79897 0.77855 1.18824 1.22143 1.22112 1.22487 0.97744 0.98424 0.95611 0.87616 0.86580 0.88338 0.90285 0.89121 0.92811 0.92843 0.89628 0.90126 0.74747 0.92795 0.90691 0.92909 0.92871 0.95878 0.95967 0.79532 0.94082 0.88977 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 13.70 67.78 0.93 -1.76 16 2 C -0.15 -2.56 8.00 25.65 0.21 -2.36 16 3 C -0.05 -0.77 0.84 -53.67 -0.05 -0.81 16 4 C -0.14 -1.53 7.02 71.98 0.51 -1.03 16 5 C -0.13 -1.38 8.35 71.98 0.60 -0.77 16 6 C 0.52 11.62 6.47 87.66 0.57 12.19 16 7 O -0.58 -18.82 15.76 -3.02 -0.05 -18.87 16 8 N -0.71 -12.96 5.00 -436.40 -2.18 -15.14 16 9 C 0.15 3.42 3.18 46.29 0.15 3.57 16 10 H 0.08 2.09 7.70 -2.39 -0.02 2.07 16 11 C -0.12 -3.26 6.51 31.67 0.21 -3.05 16 12 C -0.11 -3.61 6.13 31.32 0.19 -3.42 16 13 C -0.09 -2.79 2.98 -10.07 -0.03 -2.82 16 14 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 15 C 0.16 6.22 5.29 86.38 0.46 6.67 16 16 N -0.75 -38.17 5.34 -343.44 -1.83 -40.01 16 17 C -0.24 -13.57 9.99 84.04 0.84 -12.73 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 20 N -0.97 -60.44 13.06 21.65 0.28 -60.15 16 21 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 22 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 C -0.10 -2.29 5.97 31.68 0.19 -2.10 16 26 H 0.11 1.34 8.06 -2.91 -0.02 1.31 16 27 H 0.12 1.34 5.69 -2.91 -0.02 1.32 16 28 H 0.10 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.08 0.62 7.56 -2.38 -0.02 0.60 16 30 H 0.09 0.65 7.50 -2.39 -0.02 0.63 16 31 H 0.05 0.72 7.50 -2.39 -0.02 0.70 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.56 7.56 -2.39 -0.02 0.54 16 35 H 0.41 4.92 7.37 -92.71 -0.68 4.24 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.37 20.48 7.50 -92.71 -0.70 19.79 16 43 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 44 H 0.09 1.71 7.74 -2.39 -0.02 1.70 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.95 359.19 3.06 -68.89 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.42 Total: 29.45 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.23 Total: -12.59 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -3.73 Total: -115.30 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -71.95 3.06 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507410542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.274 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds