Wall clock time and date at job start Fri Apr 10 2020 17:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99808 * 2 1 4 4 C 1.52998 * 109.47303 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47231 * 240.00315 * 3 2 1 6 6 C 1.50704 * 109.46997 * 120.00570 * 3 2 1 7 7 O 1.21279 * 120.00013 * 359.97438 * 6 3 2 8 8 N 1.34773 * 119.99865 * 179.97438 * 6 3 2 9 9 C 1.46498 * 119.99700 * 179.97438 * 8 6 3 10 10 H 1.08995 * 110.06056 * 34.96290 * 9 8 6 11 11 C 1.54265 * 110.03400 * 273.54336 * 9 8 6 12 12 C 1.54887 * 104.20056 * 217.10747 * 11 9 8 13 13 C 1.54890 * 102.91108 * 37.84875 * 12 11 9 14 14 H 1.09003 * 110.48855 * 80.83451 * 13 12 11 15 15 C 1.53008 * 110.48546 * 203.47179 * 13 12 11 16 16 N 1.46497 * 109.46959 * 293.54974 * 15 13 12 17 17 C 1.36935 * 119.99882 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00385 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00246 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99853 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00162 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47008 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47023 * 120.00413 * 21 19 17 24 24 H 1.48496 * 109.46883 * 240.00265 * 21 19 17 25 25 C 1.53877 * 110.03212 * 156.37889 * 9 8 6 26 26 H 1.08005 * 119.99761 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99916 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99732 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47282 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.47276 * 300.00117 * 4 3 2 31 31 H 1.09000 * 109.46987 * 59.99489 * 4 3 2 32 32 H 1.09002 * 109.47277 * 300.00916 * 5 3 2 33 33 H 1.09008 * 109.47067 * 59.99840 * 5 3 2 34 34 H 1.08998 * 109.47417 * 179.97438 * 5 3 2 35 35 H 0.96996 * 119.99997 * 359.97438 * 8 6 3 36 36 H 1.09004 * 110.48891 * 98.42721 * 11 9 8 37 37 H 1.09004 * 110.59809 * 335.84361 * 11 9 8 38 38 H 1.09002 * 110.75856 * 156.25785 * 12 11 9 39 39 H 1.09006 * 110.75640 * 279.44771 * 12 11 9 40 40 H 1.09001 * 109.46977 * 53.54721 * 15 13 12 41 41 H 1.08997 * 109.47352 * 173.54840 * 15 13 12 42 42 H 0.97003 * 120.00327 * 359.97438 * 16 15 13 43 43 H 0.96997 * 120.00117 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.03493 * 238.56749 * 25 9 8 45 45 H 1.08997 * 110.03317 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0693 2.4681 0.0006 5 6 2.9431 1.3863 -1.2493 6 6 2.9300 1.3849 1.2304 7 8 2.9348 0.4721 2.0289 8 7 3.6995 2.4707 1.4434 9 6 4.5414 2.5484 2.6398 10 1 4.9215 1.5591 2.8945 11 6 3.7309 3.1230 3.8199 12 6 4.7474 4.0072 4.5842 13 6 5.5769 4.6463 3.4429 14 1 5.0461 5.4973 3.0159 15 6 6.9530 5.0749 3.9565 16 7 6.7960 6.1650 4.9225 17 6 7.8988 6.7145 5.5200 18 1 8.8843 6.3445 5.2789 19 6 7.7500 7.7478 6.4350 20 7 6.5490 8.1991 6.7285 21 14 9.2545 8.4978 7.2496 22 1 10.4774 7.8181 6.7519 23 1 9.3249 9.9446 6.9225 24 1 9.1571 8.3273 8.7215 25 6 5.7126 3.5168 2.3982 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.6142 3.4120 0.0002 30 1 0.4422 2.4105 -0.8891 31 1 0.4429 2.4100 0.8908 32 1 3.6513 0.5577 -1.2494 33 1 2.3163 1.3285 -2.1393 34 1 3.4877 2.3304 -1.2495 35 1 3.6959 3.2005 0.8046 36 1 3.3673 2.3193 4.4603 37 1 2.8988 3.7258 3.4562 38 1 4.2333 4.7737 5.1641 39 1 5.3817 3.3980 5.2283 40 1 7.4402 4.2282 4.4401 41 1 7.5630 5.4158 3.1199 42 1 5.9108 6.4976 5.1388 43 1 6.4450 8.9213 7.3676 44 1 6.6610 2.9974 2.5355 45 1 5.6549 3.9285 1.3906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507410544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:41 Heat of formation + Delta-G solvation = -47.563855 kcal Electronic energy + Delta-G solvation = -22035.069334 eV Core-core repulsion = 18858.484174 eV Total energy + Delta-G solvation = -3176.585160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41621 -39.46046 -37.26188 -36.44665 -34.78812 -32.98282 -31.64862 -30.15186 -28.88798 -28.27797 -26.25701 -24.89904 -23.94214 -22.25124 -21.34603 -20.96810 -19.53112 -19.07056 -17.89026 -17.57897 -16.75311 -16.42804 -16.03259 -15.85100 -15.58398 -15.17736 -15.09227 -14.72172 -14.54645 -14.29714 -13.53857 -13.44425 -13.31336 -13.15028 -13.05610 -12.86679 -12.81881 -12.66372 -12.40437 -12.12305 -12.10827 -12.08841 -11.76828 -11.65219 -11.63127 -11.53184 -11.47281 -10.91766 -10.78371 -10.27080 -10.03531 -8.97431 -7.94614 -5.22621 1.31776 1.47439 1.48175 1.58283 1.65295 2.31269 2.56599 3.39034 3.56266 3.57740 3.63002 3.81322 3.89597 4.01694 4.13763 4.19240 4.42776 4.46726 4.50435 4.52685 4.61167 4.69435 4.71672 4.77364 4.78830 4.86800 4.87824 4.89393 5.05931 5.07957 5.09253 5.15790 5.23800 5.27360 5.30026 5.37646 5.48651 5.55113 5.62549 5.71143 5.83664 6.28504 6.59107 7.28182 7.34648 8.12323 8.35155 9.29309 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.045651 B = 0.002758 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.201282 B =10148.483663 C =10231.995931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C -0.052 4.052 4 C -0.143 4.143 5 C -0.134 4.134 6 C 0.520 3.480 7 O -0.585 6.585 8 N -0.708 5.708 9 C 0.148 3.852 10 H 0.074 0.926 11 C -0.122 4.122 12 C -0.109 4.109 13 C -0.087 4.087 14 H 0.075 0.925 15 C 0.158 3.842 16 N -0.745 5.745 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.294 1.294 25 C -0.108 4.108 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.414 0.586 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.017 0.983 41 H 0.023 0.977 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.079 0.921 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.136 -13.645 -19.316 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C -0.055 4.055 4 C -0.201 4.201 5 C -0.192 4.192 6 C 0.308 3.692 7 O -0.464 6.464 8 N -0.360 5.360 9 C 0.043 3.957 10 H 0.093 0.907 11 C -0.161 4.161 12 C -0.147 4.147 13 C -0.106 4.106 14 H 0.093 0.907 15 C 0.031 3.969 16 N -0.387 5.387 17 C -0.375 4.375 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.222 1.222 25 C -0.147 4.147 26 H 0.134 0.866 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.251 0.749 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.040 0.960 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.911 -14.286 -18.744 25.971 hybrid contribution 0.466 0.828 0.929 1.329 sum -10.445 -13.459 -17.815 24.650 Atomic orbital electron populations 1.24161 0.95557 1.03231 0.99417 1.22558 0.96207 0.96655 1.00962 1.19934 0.95795 0.96318 0.93422 1.21989 0.98604 0.96046 1.03414 1.21838 0.99095 1.03074 0.95169 1.21060 0.79566 0.81295 0.87283 1.90676 1.67156 1.39760 1.48824 1.46123 1.44003 1.20910 1.24931 1.21462 0.90266 0.99338 0.84609 0.90744 1.22669 0.98071 0.98629 0.96753 1.22365 0.97072 0.98093 0.97203 1.22051 0.95163 0.97796 0.95625 0.90669 1.20868 0.95472 0.89493 0.91036 1.42576 1.05901 1.40527 1.49724 1.19685 0.88503 1.12153 1.17146 0.90752 1.25567 0.99323 1.00518 1.01572 1.69821 1.22310 1.31096 1.38880 0.85079 0.79288 0.77787 0.77656 1.19068 1.21929 1.22154 1.22348 0.97707 0.94921 0.99706 0.86633 0.87584 0.88286 0.90402 0.89154 0.92784 0.92777 0.89671 0.90218 0.74858 0.92522 0.90756 0.92957 0.92538 0.96488 0.95954 0.79373 0.94041 0.90204 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 13.70 67.78 0.93 -1.79 16 2 C -0.15 -2.56 8.00 25.65 0.21 -2.35 16 3 C -0.05 -0.79 0.84 -53.67 -0.05 -0.83 16 4 C -0.14 -1.60 7.02 71.98 0.51 -1.09 16 5 C -0.13 -1.42 8.35 71.98 0.60 -0.82 16 6 C 0.52 11.62 6.46 87.66 0.57 12.19 16 7 O -0.58 -18.66 15.71 -3.02 -0.05 -18.71 16 8 N -0.71 -13.13 4.84 -439.11 -2.12 -15.26 16 9 C 0.15 3.44 3.22 45.72 0.15 3.58 16 10 H 0.07 2.00 7.61 -2.39 -0.02 1.98 16 11 C -0.12 -3.23 6.53 31.67 0.21 -3.02 16 12 C -0.11 -3.43 6.00 31.88 0.19 -3.24 16 13 C -0.09 -2.62 2.94 -9.65 -0.03 -2.65 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.16 6.16 5.56 86.38 0.48 6.64 16 16 N -0.74 -37.92 5.44 -343.44 -1.87 -39.79 16 17 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 20 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 21 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 C -0.11 -2.39 6.16 31.39 0.19 -2.20 16 26 H 0.12 1.35 5.69 -2.91 -0.02 1.34 16 27 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 28 H 0.10 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.08 0.66 7.57 -2.39 -0.02 0.65 16 30 H 0.09 0.69 7.50 -2.38 -0.02 0.67 16 31 H 0.05 0.74 7.50 -2.39 -0.02 0.72 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 0.59 7.56 -2.39 -0.02 0.57 16 35 H 0.41 5.16 7.13 -92.71 -0.66 4.50 16 36 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.07 1.84 8.05 -2.38 -0.02 1.82 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.91 8.02 -2.38 -0.02 1.89 16 40 H 0.02 0.68 8.10 -2.39 -0.02 0.66 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.37 20.22 7.52 -92.71 -0.70 19.53 16 43 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.08 1.77 7.84 -2.39 -0.02 1.75 16 45 H 0.10 1.61 7.60 -2.39 -0.02 1.60 16 Total: -1.00 -71.24 358.98 3.13 -68.10 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.40 Total: 29.15 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.26 Total: -12.47 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -3.71 Total: -114.57 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -71.24 3.13 -68.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507410544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.539 kcal (2) G-P(sol) polarization free energy of solvation -71.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds