Wall clock time and date at job start Fri Apr 10 2020 17:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47099 * 2 1 4 4 C 1.52994 * 109.46823 * 240.00336 * 2 1 3 5 5 C 1.53002 * 109.46969 * 120.00480 * 2 1 3 6 6 H 1.08996 * 109.46709 * 299.99465 * 5 2 1 7 7 C 1.53001 * 109.46969 * 179.97438 * 5 2 1 8 8 N 1.46499 * 109.47196 * 184.99981 * 7 5 2 9 9 C 1.36933 * 119.99770 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00409 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99726 * 180.02562 * 9 8 7 12 12 N 1.31625 * 120.00394 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00207 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47368 * 90.00100 * 13 11 9 15 15 H 1.48498 * 109.47342 * 210.00390 * 13 11 9 16 16 H 1.48501 * 109.46783 * 330.00241 * 13 11 9 17 17 N 1.46491 * 109.47209 * 59.99628 * 5 2 1 18 18 C 1.34777 * 120.00351 * 274.99832 * 17 5 2 19 19 O 1.21615 * 120.00119 * 0.02562 * 18 17 5 20 20 C 1.47098 * 120.00033 * 180.02562 * 18 17 5 21 21 C 1.32620 * 124.62044 * 179.97438 * 20 18 17 22 22 C 1.51107 * 110.75974 * 180.02562 * 21 20 18 23 23 C 1.54582 * 104.84075 * 16.59843 * 22 21 20 24 24 C 1.51111 * 124.62305 * 359.97438 * 20 18 17 25 25 H 1.09005 * 109.46917 * 299.99602 * 1 2 3 26 26 H 1.09003 * 109.47448 * 59.99667 * 1 2 3 27 27 H 1.09002 * 109.47455 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46972 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47571 * 300.00636 * 3 2 1 30 30 H 1.09005 * 109.46911 * 60.00394 * 3 2 1 31 31 H 1.09004 * 109.47261 * 299.99686 * 4 2 1 32 32 H 1.08998 * 109.47534 * 59.99997 * 4 2 1 33 33 H 1.08998 * 109.47107 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46567 * 304.99771 * 7 5 2 35 35 H 1.09005 * 109.47263 * 64.99495 * 7 5 2 36 36 H 0.97000 * 119.99476 * 359.97438 * 8 7 5 37 37 H 0.97001 * 120.00385 * 179.97438 * 12 11 9 38 38 H 0.97001 * 119.99848 * 94.99920 * 17 5 2 39 39 H 1.08001 * 124.61748 * 0.02562 * 21 20 18 40 40 H 1.08995 * 110.37050 * 257.75748 * 22 21 20 41 41 H 1.09004 * 110.36927 * 135.43913 * 22 21 20 42 42 H 1.09002 * 110.98562 * 216.86939 * 23 22 21 43 43 H 1.09003 * 110.98058 * 93.07415 * 23 22 21 44 44 H 1.09001 * 110.36215 * 44.54767 * 24 20 18 45 45 H 1.08995 * 110.46155 * 282.26959 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.6767 -0.2075 2.1391 7 6 3.5700 -0.7219 1.2489 8 7 4.0583 -1.5143 2.3803 9 6 5.4046 -1.6578 2.5852 10 1 6.1064 -1.1873 1.9126 11 6 5.8672 -2.4089 3.6569 12 7 7.1613 -2.5474 3.8537 13 14 4.6533 -3.2234 4.8199 14 1 4.3312 -4.5859 4.3246 15 1 5.2534 -3.3183 6.1749 16 1 3.4103 -2.4135 4.8846 17 7 1.5516 -2.1025 1.2491 18 6 0.3296 -2.3852 1.7424 19 8 -0.3678 -1.4937 2.1872 20 6 -0.1605 -3.7722 1.7429 21 6 -1.3440 -4.1529 2.2046 22 6 -1.5232 -5.6456 2.0525 23 6 -0.0978 -6.1931 1.8117 24 6 0.6159 -4.9573 1.2173 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1299 -0.7216 -1.2491 34 1 3.9329 -1.1565 0.3174 35 1 3.9338 0.3017 1.3382 36 1 3.4279 -1.9365 2.9845 37 1 7.4846 -3.0720 4.6028 38 1 2.1077 -2.8135 0.8941 39 1 -2.0794 -3.4869 2.6312 40 1 -2.1634 -5.8658 1.1983 41 1 -1.9445 -6.0719 2.9630 42 1 -0.1114 -7.0167 1.0978 43 1 0.3664 -6.4990 2.7493 44 1 1.6498 -4.9155 1.5598 45 1 0.5785 -4.9846 0.1283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507908316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:47 Heat of formation + Delta-G solvation = -42.367553 kcal Electronic energy + Delta-G solvation = -23335.752435 eV Core-core repulsion = 20159.392603 eV Total energy + Delta-G solvation = -3176.359832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50881 -39.47091 -38.14859 -36.35746 -34.65276 -33.34672 -30.57349 -29.74652 -29.08997 -28.16929 -27.76750 -25.52283 -23.55504 -22.77890 -21.63192 -20.17249 -20.01419 -19.08467 -18.06615 -17.25790 -17.06841 -16.49039 -16.15345 -16.04516 -15.39318 -15.10019 -14.81730 -14.58993 -14.49235 -14.08444 -13.68626 -13.61990 -13.35726 -13.13843 -13.01574 -12.91488 -12.81298 -12.62909 -12.55103 -12.39141 -12.22326 -12.08422 -12.04299 -12.00999 -11.85659 -11.65370 -11.33359 -11.03885 -10.86009 -10.05223 -9.79294 -9.31998 -8.05366 -5.38079 0.40025 1.32117 1.35006 1.41163 2.24203 2.31512 2.43231 3.26382 3.43544 3.54811 3.63405 3.78413 4.00097 4.00392 4.11532 4.17924 4.28133 4.30394 4.40742 4.59535 4.75855 4.78963 4.80547 4.82691 4.86859 4.89204 4.94351 4.95268 5.03904 5.06696 5.11225 5.14368 5.22299 5.28929 5.32153 5.38243 5.42174 5.52638 5.55344 5.61928 5.74586 6.18328 6.58231 7.03999 7.24866 7.79792 7.98078 9.15932 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.007691 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.622980 B = 3639.595270 C = 5535.182098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.153 3.847 6 H 0.061 0.939 7 C 0.146 3.854 8 N -0.757 5.757 9 C -0.228 4.228 10 H 0.065 0.935 11 C -0.055 4.055 12 N -0.979 5.979 13 Si 0.945 3.055 14 H -0.270 1.270 15 H -0.296 1.296 16 H -0.272 1.272 17 N -0.705 5.705 18 C 0.558 3.442 19 O -0.577 6.577 20 C -0.217 4.217 21 C -0.070 4.070 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.093 4.093 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.362 0.638 37 H 0.258 0.742 38 H 0.408 0.592 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.948 -4.070 -10.340 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.195 4.195 5 C 0.048 3.952 6 H 0.079 0.921 7 C 0.020 3.980 8 N -0.403 5.403 9 C -0.359 4.359 10 H 0.083 0.917 11 C -0.247 4.247 12 N -0.629 5.629 13 Si 0.773 3.227 14 H -0.195 1.195 15 H -0.223 1.223 16 H -0.198 1.198 17 N -0.354 5.354 18 C 0.348 3.652 19 O -0.459 6.459 20 C -0.220 4.220 21 C -0.090 4.090 22 C -0.136 4.136 23 C -0.159 4.159 24 C -0.131 4.131 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.195 0.805 37 H 0.067 0.933 38 H 0.244 0.756 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.177 -3.404 -10.094 21.937 hybrid contribution 0.190 -0.484 1.121 1.235 sum -18.987 -3.888 -8.974 21.358 Atomic orbital electron populations 1.21763 0.93964 1.01011 1.00905 1.20848 0.95971 0.96045 0.94305 1.21894 1.01411 0.94167 1.02336 1.21881 1.01256 1.00112 0.96258 1.21170 0.93039 0.82383 0.98611 0.92104 1.21233 0.90852 0.95392 0.90494 1.42733 1.03093 1.62268 1.32174 1.19032 0.83212 1.24951 1.08714 0.91716 1.25340 0.96984 1.01884 1.00506 1.69853 1.13429 1.46644 1.32999 0.85567 0.78868 0.79377 0.78862 1.19532 1.22258 1.19787 1.45882 1.17183 1.10118 1.62262 1.18366 0.81240 0.88776 0.76776 1.90745 1.57547 1.48921 1.48679 1.21962 0.99406 0.93083 1.07569 1.24321 0.94801 0.98567 0.91262 1.21524 0.98245 0.89849 1.03993 1.22472 0.94673 0.97027 1.01717 1.21305 0.98743 0.91503 1.01505 0.94075 0.91879 0.94052 0.92117 0.90628 0.93263 0.92812 0.91161 0.92184 0.93205 0.93845 0.80506 0.93309 0.75621 0.85080 0.87622 0.88869 0.88307 0.91430 0.91970 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 6.99 71.98 0.50 -2.65 16 2 C -0.07 -1.81 0.62 -52.18 -0.03 -1.84 16 3 C -0.14 -3.30 8.12 71.98 0.58 -2.72 16 4 C -0.14 -3.06 7.97 71.98 0.57 -2.49 16 5 C 0.15 4.92 1.69 44.99 0.08 5.00 16 6 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 7 C 0.15 5.39 5.10 86.38 0.44 5.83 16 8 N -0.76 -35.21 5.24 -343.45 -1.80 -37.01 16 9 C -0.23 -12.84 10.47 84.03 0.88 -11.95 16 10 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 11 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16 12 N -0.98 -62.21 13.97 21.65 0.30 -61.91 16 13 Si 0.94 46.50 27.74 68.60 1.90 48.40 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 16 H -0.27 -12.97 6.52 99.48 0.65 -12.32 16 17 N -0.70 -21.57 3.63 -446.16 -1.62 -23.19 16 18 C 0.56 17.81 6.15 86.57 0.53 18.34 16 19 O -0.58 -21.62 13.88 -4.08 -0.06 -21.67 16 20 C -0.22 -5.57 6.09 -18.57 -0.11 -5.68 16 21 C -0.07 -1.51 10.43 24.65 0.26 -1.26 16 22 C -0.10 -1.44 6.80 30.52 0.21 -1.23 16 23 C -0.12 -1.93 7.16 31.68 0.23 -1.70 16 24 C -0.09 -1.92 6.02 30.52 0.18 -1.74 16 25 H 0.04 1.25 7.53 -2.38 -0.02 1.23 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.18 5.78 -2.39 -0.01 1.17 16 28 H 0.06 1.47 6.54 -2.39 -0.02 1.45 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.05 1.18 7.60 -2.38 -0.02 1.17 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.39 6.32 -2.39 -0.02 1.37 16 34 H 0.05 1.75 6.17 -2.39 -0.01 1.74 16 35 H 0.04 1.63 6.71 -2.38 -0.02 1.62 16 36 H 0.36 16.90 5.20 -92.71 -0.48 16.42 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.41 11.72 7.61 -92.71 -0.71 11.01 16 39 H 0.13 2.92 8.03 -2.91 -0.02 2.90 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.46 7.83 -2.39 -0.02 1.44 16 45 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.79 346.86 3.25 -66.54 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.27 Total: 35.71 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.79 Total: -6.87 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -3.12 Total: -122.11 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.06 Total: -21.67 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.40 kcal Total: -69.79 3.25 -66.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507908316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.171 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds