Wall clock time and date at job start Fri Apr 10 2020 17:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47032 * 2 1 4 4 C 1.32995 * 119.99678 * 95.00440 * 3 2 1 5 5 C 1.47101 * 119.99976 * 172.05257 * 4 3 2 6 6 O 1.21606 * 119.99928 * 353.62454 * 5 4 3 7 7 N 1.34776 * 119.99765 * 173.61898 * 5 4 3 8 8 C 1.46507 * 119.99800 * 179.72463 * 7 5 4 9 9 C 1.52996 * 109.46887 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.47711 * 294.99847 * 9 8 7 11 11 N 1.46505 * 109.47262 * 55.00564 * 9 8 7 12 12 C 1.36936 * 119.99671 * 204.99957 * 11 9 8 13 13 H 1.07996 * 120.00403 * 359.97438 * 12 11 9 14 14 C 1.38815 * 119.99498 * 179.97438 * 12 11 9 15 15 N 1.31616 * 120.00297 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99796 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47282 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47236 * 119.99741 * 16 14 12 19 19 H 1.48500 * 109.47156 * 239.99611 * 16 14 12 20 20 C 1.53003 * 109.46812 * 174.99915 * 9 8 7 21 21 C 1.52994 * 117.50099 * 248.74760 * 20 9 8 22 22 C 1.52999 * 117.49958 * 180.08680 * 20 9 8 23 23 C 1.50693 * 120.00304 * 275.00206 * 3 2 1 24 24 C 1.53002 * 109.47321 * 272.76078 * 23 3 2 25 25 H 1.09005 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46931 * 299.99486 * 1 2 3 27 27 H 1.08996 * 109.47364 * 59.99949 * 1 2 3 28 28 H 1.09002 * 109.47408 * 240.00429 * 2 1 3 29 29 H 1.09003 * 109.47139 * 120.00335 * 2 1 3 30 30 H 1.07998 * 119.99900 * 352.04713 * 4 3 2 31 31 H 0.97004 * 120.00543 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.46831 * 300.00136 * 8 7 5 33 33 H 1.09003 * 109.46814 * 60.00452 * 8 7 5 34 34 H 0.96999 * 119.99871 * 24.99494 * 11 9 8 35 35 H 0.96994 * 120.00480 * 180.02562 * 15 14 12 36 36 H 1.09005 * 115.55094 * 34.41978 * 20 9 8 37 37 H 1.09004 * 117.49937 * 359.97438 * 21 20 9 38 38 H 1.09007 * 117.50082 * 145.02036 * 21 20 9 39 39 H 1.09000 * 117.50476 * 214.98077 * 22 20 9 40 40 H 1.08999 * 117.49986 * 359.97438 * 22 20 9 41 41 H 1.08993 * 109.47133 * 32.75870 * 23 3 2 42 42 H 1.08999 * 109.47467 * 152.76136 * 23 3 2 43 43 H 1.09002 * 109.47264 * 59.99424 * 24 23 3 44 44 H 1.09001 * 109.47751 * 179.97438 * 24 23 3 45 45 H 1.09007 * 109.46801 * 300.00573 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3487 2.0142 1.1474 5 6 3.0014 3.3324 1.1382 6 8 3.3566 3.8277 0.0859 7 7 3.2056 3.9913 2.2961 8 6 3.8611 5.3015 2.2875 9 6 3.9685 5.8274 3.7202 10 1 2.9694 6.0075 4.1171 11 7 4.6540 4.8368 4.5540 12 6 4.4359 4.8110 5.9056 13 1 3.7589 5.5211 6.3571 14 6 5.0850 3.8720 6.6955 15 7 5.9096 3.0062 6.1453 16 14 4.7881 3.8372 8.5394 17 1 3.8245 4.9061 8.9060 18 1 4.2316 2.5159 8.9264 19 1 6.0716 4.0615 9.2518 20 6 4.7626 7.1352 3.7253 21 6 6.1479 7.1181 4.3744 22 6 4.9830 7.8227 5.0742 23 6 2.1762 2.1692 -1.3000 24 6 3.5552 1.8883 -1.9003 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.1263 1.5283 2.0859 31 1 2.9225 3.5962 3.1355 32 1 4.8590 5.2057 1.8595 33 1 3.2740 5.9976 1.6884 34 1 5.2622 4.1992 4.1485 35 1 6.3629 2.3499 6.6971 36 1 4.6238 7.7729 2.8522 37 1 6.4934 6.1752 4.7984 38 1 6.9204 7.7448 3.9287 39 1 4.9896 8.9126 5.0886 40 1 4.5619 7.3435 5.9581 41 1 1.4037 1.8412 -1.9955 42 1 2.0704 3.2385 -1.1174 43 1 3.6611 0.8190 -2.0829 44 1 3.6592 2.4293 -2.8409 45 1 4.3279 2.2162 -1.2047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566706235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:00 Heat of formation + Delta-G solvation = -12.324347 kcal Electronic energy + Delta-G solvation = -22289.315881 eV Core-core repulsion = 19114.258821 eV Total energy + Delta-G solvation = -3175.057060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90168 -39.25578 -37.47972 -35.78280 -35.03166 -32.82608 -32.59448 -31.13044 -29.52872 -26.03839 -25.24045 -24.17329 -23.88974 -22.97563 -21.64895 -20.67215 -19.57205 -19.03271 -17.90098 -16.96880 -16.73919 -16.38191 -16.07591 -15.75464 -15.63400 -15.26038 -14.96721 -14.62617 -14.52214 -14.12660 -13.80643 -13.64369 -13.40284 -12.94653 -12.89349 -12.88969 -12.64740 -12.59200 -12.53622 -12.13067 -12.09579 -11.92406 -11.80682 -11.58329 -11.56981 -11.04380 -10.90759 -10.62159 -10.42203 -10.10359 -9.72118 -8.98934 -7.88334 -5.15855 0.46940 1.48075 1.50813 1.57964 2.37257 2.45673 2.58743 3.14055 3.46797 3.79687 3.83804 3.89618 4.01058 4.22955 4.28308 4.33475 4.36287 4.43615 4.47621 4.52112 4.59835 4.64842 4.68105 4.73267 4.82089 4.94361 4.96571 4.99773 5.03017 5.12299 5.18776 5.24405 5.28394 5.36330 5.42394 5.44836 5.59500 5.66760 5.68014 5.71561 5.73462 6.31886 6.73558 7.38943 7.40176 8.11080 8.36690 9.34434 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.004349 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.457153 B = 6437.251700 C = 7623.764478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.017 4.017 4 C -0.244 4.244 5 C 0.535 3.465 6 O -0.572 6.572 7 N -0.712 5.712 8 C 0.131 3.869 9 C 0.192 3.808 10 H 0.059 0.941 11 N -0.720 5.720 12 C -0.217 4.217 13 H 0.076 0.924 14 C -0.067 4.067 15 N -0.965 5.965 16 Si 0.957 3.043 17 H -0.268 1.268 18 H -0.298 1.298 19 H -0.302 1.302 20 C -0.169 4.169 21 C -0.173 4.173 22 C -0.169 4.169 23 C -0.103 4.103 24 C -0.127 4.127 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.408 0.592 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.373 0.627 35 H 0.247 0.753 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -1.348 -12.496 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.019 4.019 4 C -0.265 4.265 5 C 0.326 3.674 6 O -0.455 6.455 7 N -0.362 5.362 8 C 0.007 3.993 9 C 0.083 3.917 10 H 0.077 0.923 11 N -0.360 5.360 12 C -0.349 4.349 13 H 0.094 0.906 14 C -0.259 4.259 15 N -0.616 5.616 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.226 1.226 19 H -0.230 1.230 20 C -0.190 4.190 21 C -0.211 4.211 22 C -0.206 4.206 23 C -0.140 4.140 24 C -0.184 4.184 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.243 0.757 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.206 0.794 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.679 -0.925 -13.025 16.254 hybrid contribution 0.533 -0.454 1.734 1.870 sum -9.146 -1.379 -11.291 14.596 Atomic orbital electron populations 1.21709 0.93235 1.02927 1.02237 1.20819 0.97401 0.90946 1.04101 1.22782 0.89097 0.95643 0.94387 1.22449 1.07960 0.96060 1.00025 1.18956 0.79255 0.85989 0.83186 1.90662 1.53540 1.70311 1.31030 1.45937 1.60302 1.20432 1.09526 1.21387 0.96789 0.84267 0.96884 1.20127 0.94842 0.87789 0.88927 0.92339 1.42524 1.52531 1.37010 1.03888 1.19466 1.19637 1.11246 0.84540 0.90592 1.25305 1.00517 0.99080 1.01002 1.69805 1.34189 1.22463 1.35188 0.85312 0.76730 0.77033 0.82131 1.19206 1.22578 1.23026 1.23057 0.99580 0.99721 0.96614 1.22769 0.91397 1.02191 1.04706 1.22841 1.03260 0.98560 0.95973 1.20941 0.98269 1.01185 0.93569 1.21474 0.96001 1.00973 0.99983 0.90645 0.93011 0.92078 0.89018 0.90468 0.84920 0.75667 0.93393 0.90473 0.79422 0.94415 0.86743 0.90499 0.89116 0.88003 0.90330 0.90119 0.90324 0.92087 0.92237 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.10 -1.63 6.11 29.85 0.18 -1.45 16 3 C -0.02 -0.40 4.61 -17.62 -0.08 -0.48 16 4 C -0.24 -6.81 9.60 23.43 0.22 -6.58 16 5 C 0.53 18.03 7.60 86.57 0.66 18.69 16 6 O -0.57 -21.29 11.68 -4.05 -0.05 -21.34 16 7 N -0.71 -24.15 5.39 -466.71 -2.51 -26.66 16 8 C 0.13 4.45 5.22 86.38 0.45 4.90 16 9 C 0.19 6.98 2.86 44.99 0.13 7.10 16 10 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 11 N -0.72 -32.44 3.07 -322.94 -0.99 -33.43 16 12 C -0.22 -10.87 8.16 84.03 0.69 -10.19 16 13 H 0.08 3.71 6.91 -2.91 -0.02 3.69 16 14 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 15 N -0.97 -56.32 13.06 21.65 0.28 -56.03 16 16 Si 0.96 44.45 29.55 68.60 2.03 46.48 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 19 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 20 C -0.17 -5.61 5.70 -10.79 -0.06 -5.67 16 21 C -0.17 -6.39 9.74 30.62 0.30 -6.09 16 22 C -0.17 -5.75 9.87 30.62 0.30 -5.45 16 23 C -0.10 -2.47 5.32 29.85 0.16 -2.31 16 24 C -0.13 -3.09 9.45 71.98 0.68 -2.41 16 25 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 30 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.41 14.14 8.12 -92.71 -0.75 13.39 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 34 H 0.37 18.93 7.80 -92.71 -0.72 18.20 16 35 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.11 3.22 8.11 -2.38 -0.02 3.20 16 37 H 0.08 3.54 6.68 -2.38 -0.02 3.52 16 38 H 0.09 2.91 8.14 -2.38 -0.02 2.90 16 39 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.08 3.06 6.22 -2.39 -0.01 3.04 16 41 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 42 H 0.08 2.34 5.57 -2.39 -0.01 2.32 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.03 1.05 6.91 -2.38 -0.02 1.04 16 Total: -1.00 -60.20 362.07 3.06 -57.14 By element: Atomic # 1 Polarization: 48.75 SS G_CDS: -0.50 Total: 48.25 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.81 Total: -14.40 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.22 Total: -116.13 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -60.20 3.06 -57.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566706235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.813 kcal (2) G-P(sol) polarization free energy of solvation -60.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds