Wall clock time and date at job start Fri Apr 10 2020 17:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 C 1.52996 * 109.47232 * 124.99717 * 3 2 1 5 5 C 1.53002 * 109.47340 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47234 * 275.00436 * 9 8 6 12 12 C 1.52992 * 109.47146 * 299.99812 * 11 9 8 13 13 C 1.53002 * 109.47376 * 299.99886 * 12 11 9 14 14 C 1.52998 * 109.46890 * 59.99957 * 13 12 11 15 15 H 1.09002 * 109.47080 * 59.99828 * 14 13 12 16 16 N 1.46500 * 109.47211 * 180.02562 * 14 13 12 17 17 C 1.36934 * 119.99683 * 275.00081 * 16 14 13 18 18 H 1.07998 * 120.00296 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00110 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00157 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00008 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46669 * 90.00131 * 21 19 17 23 23 H 1.48493 * 109.47530 * 210.00588 * 21 19 17 24 24 H 1.48499 * 109.46871 * 330.00917 * 21 19 17 25 25 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 26 26 H 1.08001 * 120.00021 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99970 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 30 30 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 31 31 H 1.09004 * 109.46785 * 60.00162 * 4 3 2 32 32 H 1.09004 * 109.47694 * 300.00261 * 4 3 2 33 33 H 1.09000 * 109.46497 * 60.00561 * 5 4 3 34 34 H 1.09000 * 109.47312 * 300.00340 * 5 4 3 35 35 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47093 * 59.99825 * 11 9 8 37 37 H 1.09002 * 109.47121 * 179.97438 * 11 9 8 38 38 H 1.09007 * 109.47184 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47274 * 59.99894 * 12 11 9 40 40 H 1.09002 * 109.46925 * 300.00221 * 13 12 11 41 41 H 1.08994 * 109.47420 * 179.97438 * 13 12 11 42 42 H 0.96994 * 120.00100 * 94.99945 * 16 14 13 43 43 H 0.97004 * 120.00045 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46987 * 180.02562 * 25 9 8 45 45 H 1.08997 * 109.47162 * 300.00499 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8004 2.6580 1.1813 6 6 4.7577 2.6852 2.3449 7 8 4.8218 1.7382 3.0998 8 7 5.5434 3.7617 2.5460 9 6 6.4736 3.7886 3.6774 10 1 6.8643 2.7858 3.8504 11 6 5.7399 4.2730 4.9295 12 6 5.1915 5.6805 4.6867 13 6 6.3483 6.6316 4.3735 14 6 7.0820 6.1472 3.1213 15 1 6.3898 6.1272 2.2795 16 7 8.1900 7.0575 2.8216 17 6 7.9644 8.1931 2.0903 18 1 6.9698 8.4174 1.7342 19 6 9.0143 9.0554 1.8059 20 7 8.7975 10.1466 1.1026 21 14 10.7348 8.6673 2.4213 22 1 11.4526 7.8564 1.4051 23 1 11.4738 9.9335 2.6565 24 1 10.6454 7.9029 3.6913 25 6 7.6304 4.7396 3.3640 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7399 0.5066 1.0920 32 1 2.4772 1.2356 2.1131 33 1 3.0956 3.4847 1.2707 34 1 4.3582 2.7551 0.2499 35 1 5.4924 4.5190 1.9420 36 1 4.9158 3.5954 5.1527 37 1 6.4320 4.2926 5.7714 38 1 4.6691 6.0258 5.5790 39 1 4.4993 5.6606 3.8449 40 1 7.0404 6.6516 5.2153 41 1 5.9575 7.6343 4.2001 42 1 9.0833 6.8560 3.1412 43 1 9.5312 10.7495 0.9041 44 1 8.3228 4.7592 4.2057 45 1 8.1531 4.3945 2.4720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567172295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:06 Heat of formation + Delta-G solvation = -35.989381 kcal Electronic energy + Delta-G solvation = -22020.644816 eV Core-core repulsion = 18844.561563 eV Total energy + Delta-G solvation = -3176.083253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15600 -38.17333 -36.16713 -34.60754 -33.11910 -32.49032 -31.38157 -29.82930 -28.41508 -27.19206 -23.56360 -22.75645 -22.03709 -20.97412 -20.54137 -20.04449 -18.96227 -17.63377 -17.11072 -16.11518 -15.58887 -15.47969 -14.98661 -14.65008 -14.37956 -13.94932 -13.76219 -13.59447 -13.50508 -12.88882 -12.77173 -12.54236 -12.29203 -11.97107 -11.87587 -11.81842 -11.72213 -11.29111 -11.13734 -10.99516 -10.94527 -10.90198 -10.46113 -10.28178 -10.10633 -9.77584 -9.73052 -9.61123 -9.56908 -8.97673 -8.87727 -7.31648 -5.81453 -3.17233 2.01677 2.70938 3.27741 3.34394 3.37343 3.42652 4.52383 4.55177 4.65075 4.75607 4.89597 4.97214 5.03430 5.05752 5.08516 5.29021 5.36531 5.42209 5.46132 5.49873 5.56661 5.59316 5.59971 5.67324 5.75991 5.86684 5.93562 5.95595 6.01189 6.12006 6.14273 6.21929 6.36614 6.38039 6.40267 6.50730 6.61194 6.63948 6.82737 6.96785 7.61150 7.93979 8.30668 8.37577 9.15924 9.88726 10.08294 11.36754 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.003258 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.758133 B = 8592.476352 C = 9140.731925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.098 4.098 5 C -0.144 4.144 6 C 0.512 3.488 7 O -0.549 6.549 8 N -0.720 5.720 9 C 0.152 3.848 10 H 0.083 0.917 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.137 4.137 14 C 0.185 3.815 15 H 0.051 0.949 16 N -0.749 5.749 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.137 4.137 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.404 0.596 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.074 0.926 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 -17.148 1.290 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.184 4.184 6 C 0.299 3.701 7 O -0.427 6.427 8 N -0.372 5.372 9 C 0.047 3.953 10 H 0.101 0.899 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.178 4.178 14 C 0.076 3.924 15 H 0.069 0.931 16 N -0.391 5.391 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.581 5.581 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.176 4.176 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.240 0.760 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.984 -17.613 1.677 21.369 hybrid contribution 1.281 0.357 0.151 1.338 sum -10.703 -17.256 1.828 20.387 Atomic orbital electron populations 1.23848 0.96000 1.01768 1.02012 1.22975 0.96021 0.98636 0.99128 1.20821 0.98281 0.95423 0.98923 1.21259 0.97600 0.96289 0.98410 1.21723 0.98403 1.00556 0.97729 1.20692 0.81027 0.82183 0.86242 1.90672 1.68494 1.35718 1.47859 1.46257 1.40586 1.19742 1.30665 1.20897 0.89117 0.99629 0.85702 0.89877 1.21898 1.00306 0.97120 0.97292 1.21493 0.98344 0.94619 1.00839 1.22252 0.96711 0.99099 0.99692 1.20122 0.90141 0.87449 0.94715 0.93147 1.42794 1.05793 1.25305 1.65210 1.19048 0.96569 0.96886 1.24846 0.89237 1.24677 0.97555 0.96832 1.00075 1.69698 1.31414 1.13434 1.43569 0.86555 0.86047 0.77255 0.78677 1.21112 1.21785 1.20328 1.22167 0.96961 0.95983 1.02509 0.88614 0.88678 0.87427 0.91387 0.90820 0.91144 0.91171 0.88850 0.88791 0.76006 0.92028 0.91305 0.92736 0.92435 0.92691 0.91595 0.80640 0.93045 0.90737 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 14.32 29.01 0.42 -1.05 16 2 C -0.15 -1.17 9.52 -36.03 -0.34 -1.51 16 3 C -0.10 -0.74 5.66 -27.89 -0.16 -0.90 16 4 C -0.10 -0.90 4.49 -26.73 -0.12 -1.02 16 5 C -0.14 -1.30 5.70 -27.88 -0.16 -1.46 16 6 C 0.51 6.40 7.79 -10.98 -0.09 6.31 16 7 O -0.55 -8.74 15.64 5.56 0.09 -8.65 16 8 N -0.72 -8.76 4.23 -53.81 -0.23 -8.98 16 9 C 0.15 1.99 2.78 -67.93 -0.19 1.80 16 10 H 0.08 1.15 7.58 -51.93 -0.39 0.75 16 11 C -0.13 -1.64 5.60 -26.74 -0.15 -1.79 16 12 C -0.11 -1.53 5.76 -26.73 -0.15 -1.69 16 13 C -0.14 -2.25 5.50 -26.73 -0.15 -2.40 16 14 C 0.19 3.23 2.60 -67.93 -0.18 3.06 16 15 H 0.05 0.88 6.44 -51.93 -0.33 0.55 16 16 N -0.75 -16.76 4.92 -53.42 -0.26 -17.02 16 17 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 21 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 25 C -0.14 -1.99 5.08 -26.73 -0.14 -2.13 16 26 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 27 H 0.09 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 4.61 6.87 -40.82 -0.28 4.33 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.75 7.60 -51.93 -0.39 0.36 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -31.60 357.84 -8.56 -40.16 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.96 Total: 9.56 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.65 Total: -9.47 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.28 Total: -53.95 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.60 -8.56 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567172295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.171 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds