Wall clock time and date at job start Fri Apr 10 2020 17:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 C 1.52996 * 109.47232 * 124.99717 * 3 2 1 5 5 C 1.53002 * 109.47340 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47234 * 275.00436 * 9 8 6 12 12 C 1.52992 * 109.47146 * 299.99812 * 11 9 8 13 13 C 1.53002 * 109.47376 * 299.99886 * 12 11 9 14 14 C 1.52998 * 109.46890 * 59.99957 * 13 12 11 15 15 H 1.09002 * 109.47080 * 59.99828 * 14 13 12 16 16 N 1.46500 * 109.47211 * 180.02562 * 14 13 12 17 17 C 1.36934 * 119.99683 * 275.00081 * 16 14 13 18 18 H 1.07998 * 120.00296 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00110 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00157 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00008 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46669 * 90.00131 * 21 19 17 23 23 H 1.48493 * 109.47530 * 210.00588 * 21 19 17 24 24 H 1.48499 * 109.46871 * 330.00917 * 21 19 17 25 25 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 26 26 H 1.08001 * 120.00021 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99970 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 30 30 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 31 31 H 1.09004 * 109.46785 * 60.00162 * 4 3 2 32 32 H 1.09004 * 109.47694 * 300.00261 * 4 3 2 33 33 H 1.09000 * 109.46497 * 60.00561 * 5 4 3 34 34 H 1.09000 * 109.47312 * 300.00340 * 5 4 3 35 35 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47093 * 59.99825 * 11 9 8 37 37 H 1.09002 * 109.47121 * 179.97438 * 11 9 8 38 38 H 1.09007 * 109.47184 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47274 * 59.99894 * 12 11 9 40 40 H 1.09002 * 109.46925 * 300.00221 * 13 12 11 41 41 H 1.08994 * 109.47420 * 179.97438 * 13 12 11 42 42 H 0.96994 * 120.00100 * 94.99945 * 16 14 13 43 43 H 0.97004 * 120.00045 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46987 * 180.02562 * 25 9 8 45 45 H 1.08997 * 109.47162 * 300.00499 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8004 2.6580 1.1813 6 6 4.7577 2.6852 2.3449 7 8 4.8218 1.7382 3.0998 8 7 5.5434 3.7617 2.5460 9 6 6.4736 3.7886 3.6774 10 1 6.8643 2.7858 3.8504 11 6 5.7399 4.2730 4.9295 12 6 5.1915 5.6805 4.6867 13 6 6.3483 6.6316 4.3735 14 6 7.0820 6.1472 3.1213 15 1 6.3898 6.1272 2.2795 16 7 8.1900 7.0575 2.8216 17 6 7.9644 8.1931 2.0903 18 1 6.9698 8.4174 1.7342 19 6 9.0143 9.0554 1.8059 20 7 8.7975 10.1466 1.1026 21 14 10.7348 8.6673 2.4213 22 1 11.4526 7.8564 1.4051 23 1 11.4738 9.9335 2.6565 24 1 10.6454 7.9029 3.6913 25 6 7.6304 4.7396 3.3640 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7399 0.5066 1.0920 32 1 2.4772 1.2356 2.1131 33 1 3.0956 3.4847 1.2707 34 1 4.3582 2.7551 0.2499 35 1 5.4924 4.5190 1.9420 36 1 4.9158 3.5954 5.1527 37 1 6.4320 4.2926 5.7714 38 1 4.6691 6.0258 5.5790 39 1 4.4993 5.6606 3.8449 40 1 7.0404 6.6516 5.2153 41 1 5.9575 7.6343 4.2001 42 1 9.0833 6.8560 3.1412 43 1 9.5312 10.7495 0.9041 44 1 8.3228 4.7592 4.2057 45 1 8.1531 4.3945 2.4720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567172295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:05 Heat of formation + Delta-G solvation = -55.083983 kcal Electronic energy + Delta-G solvation = -22021.472821 eV Core-core repulsion = 18844.561563 eV Total energy + Delta-G solvation = -3176.911257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22937 -39.36367 -36.87539 -36.19830 -34.41068 -33.38224 -33.08237 -30.99149 -29.92095 -27.94010 -25.38201 -23.72513 -23.11761 -22.41237 -21.46382 -20.66828 -20.27908 -19.45670 -18.10043 -16.93444 -16.76613 -16.69559 -16.32008 -15.89768 -15.38932 -15.36762 -14.90117 -14.72978 -14.53227 -14.29647 -14.18344 -13.74730 -13.38602 -13.07357 -13.01185 -12.95474 -12.84846 -12.58270 -12.43498 -12.35760 -12.00782 -11.80408 -11.74611 -11.60838 -11.60459 -11.51077 -11.02908 -10.87799 -10.77917 -10.16815 -9.96506 -9.27783 -7.99569 -5.32197 1.39830 1.42201 1.43829 1.49514 1.73602 2.32655 2.50639 3.31829 3.47015 3.81654 3.88229 3.89287 3.93146 4.09695 4.19478 4.28742 4.34280 4.35821 4.41855 4.53295 4.64303 4.67315 4.70317 4.72687 4.78916 4.82504 4.95801 4.97359 5.08506 5.11345 5.17092 5.21248 5.25864 5.37264 5.42137 5.50145 5.54387 5.67222 5.80237 5.81396 5.93131 6.24732 6.63106 7.11252 7.32953 7.88176 8.06022 9.21826 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.003258 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.758133 B = 8592.476352 C = 9140.731925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.092 4.092 4 C -0.092 4.092 5 C -0.139 4.139 6 C 0.510 3.490 7 O -0.585 6.585 8 N -0.717 5.717 9 C 0.156 3.844 10 H 0.081 0.919 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.179 3.821 15 H 0.049 0.951 16 N -0.753 5.753 17 C -0.222 4.222 18 H 0.060 0.940 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.952 3.048 22 H -0.280 1.280 23 H -0.301 1.301 24 H -0.252 1.252 25 C -0.125 4.125 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.408 0.592 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.083 0.917 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.048 -18.677 1.903 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.179 4.179 6 C 0.298 3.702 7 O -0.466 6.466 8 N -0.369 5.369 9 C 0.051 3.949 10 H 0.099 0.901 11 C -0.160 4.160 12 C -0.143 4.143 13 C -0.170 4.170 14 C 0.072 3.928 15 H 0.067 0.933 16 N -0.395 5.395 17 C -0.353 4.353 18 H 0.078 0.922 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.780 3.220 22 H -0.206 1.206 23 H -0.228 1.228 24 H -0.177 1.177 25 C -0.164 4.164 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.102 -19.188 2.312 22.803 hybrid contribution 1.185 0.796 -0.042 1.429 sum -10.917 -18.391 2.270 21.508 Atomic orbital electron populations 1.24015 0.95971 1.02482 1.01170 1.23087 0.96389 0.98885 0.99911 1.20781 0.98064 0.95596 0.98468 1.21178 0.97460 0.95966 0.98410 1.21768 0.98109 1.01075 0.96902 1.21260 0.80965 0.81386 0.86547 1.90659 1.69628 1.36958 1.49356 1.46255 1.40306 1.19924 1.30460 1.20797 0.88885 0.98988 0.86229 0.90085 1.21844 1.00380 0.96301 0.97429 1.21399 0.97150 0.94189 1.01554 1.22099 0.97599 0.98355 0.98926 1.20363 0.89050 0.88281 0.95153 0.93282 1.42834 1.07332 1.24663 1.64683 1.19015 0.95072 0.97740 1.23465 0.92215 1.25466 1.01958 0.97028 1.01317 1.69877 1.32501 1.15076 1.46133 0.85455 0.80616 0.76799 0.79161 1.20606 1.22811 1.17654 1.22026 0.97511 0.93885 1.02943 0.88079 0.87895 0.87396 0.90649 0.89923 0.92445 0.92767 0.86980 0.86931 0.75469 0.92210 0.90261 0.91519 0.92098 0.92649 0.94324 0.80280 0.93538 0.89802 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 14.32 67.78 0.97 -1.68 16 2 C -0.16 -2.39 9.52 25.65 0.24 -2.14 16 3 C -0.09 -1.24 5.66 29.85 0.17 -1.07 16 4 C -0.09 -1.58 4.49 30.59 0.14 -1.45 16 5 C -0.14 -2.23 5.70 29.85 0.17 -2.06 16 6 C 0.51 11.93 7.79 87.66 0.68 12.61 16 7 O -0.59 -18.03 15.64 -3.03 -0.05 -18.08 16 8 N -0.72 -16.06 4.23 -442.54 -1.87 -17.93 16 9 C 0.16 3.76 2.78 44.99 0.13 3.88 16 10 H 0.08 2.07 7.58 -2.39 -0.02 2.05 16 11 C -0.12 -2.80 5.60 30.59 0.17 -2.63 16 12 C -0.10 -2.57 5.76 30.59 0.18 -2.40 16 13 C -0.13 -4.06 5.50 30.59 0.17 -3.90 16 14 C 0.18 5.99 2.60 44.99 0.12 6.11 16 15 H 0.05 1.66 6.44 -2.39 -0.02 1.65 16 16 N -0.75 -32.71 4.92 -322.94 -1.59 -34.30 16 17 C -0.22 -12.04 10.41 84.03 0.87 -11.16 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.98 -62.01 13.97 21.65 0.30 -61.71 16 21 Si 0.95 44.52 27.74 68.60 1.90 46.42 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 25 C -0.13 -3.33 5.08 30.60 0.16 -3.17 16 26 H 0.10 1.21 7.84 -2.91 -0.02 1.18 16 27 H 0.10 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.07 0.91 7.79 -2.38 -0.02 0.89 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 32 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 8.51 6.87 -92.71 -0.64 7.87 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.06 1.46 7.60 -2.39 -0.02 1.45 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.36 15.35 5.66 -92.71 -0.52 14.83 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -68.50 357.84 3.06 -65.44 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.27 Total: 32.56 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 4.63 Total: -12.40 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -3.16 Total: -113.94 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.05 Total: -18.08 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Total: -68.50 3.06 -65.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567172295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.358 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds