Wall clock time and date at job start Fri Apr 10 2020 17:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 C 1.53000 * 109.46912 * 125.00530 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47291 * 179.97438 * 5 4 3 7 7 O 1.21288 * 120.00038 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00369 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00115 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46862 * 325.00574 * 9 8 6 11 11 C 1.53004 * 109.46672 * 84.99955 * 9 8 6 12 12 C 1.53000 * 109.47368 * 60.00367 * 11 9 8 13 13 C 1.53005 * 109.47332 * 59.99351 * 12 11 9 14 14 C 1.53006 * 109.47088 * 300.00463 * 13 12 11 15 15 H 1.09001 * 109.46662 * 300.00028 * 14 13 12 16 16 N 1.46495 * 109.46851 * 179.97438 * 14 13 12 17 17 C 1.36946 * 119.99771 * 85.00389 * 16 14 13 18 18 H 1.08000 * 119.99437 * 359.97438 * 17 16 14 19 19 C 1.38804 * 119.99887 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00170 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00022 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46921 * 90.00225 * 21 19 17 23 23 H 1.48502 * 109.46945 * 210.00021 * 21 19 17 24 24 H 1.48498 * 109.47174 * 330.00116 * 21 19 17 25 25 C 1.52991 * 109.47005 * 204.99860 * 9 8 6 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99742 * 4 3 2 32 32 H 1.08992 * 109.47399 * 59.99914 * 4 3 2 33 33 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 34 34 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 35 35 H 0.97003 * 119.99640 * 359.97438 * 8 6 5 36 36 H 1.09004 * 109.46822 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47523 * 299.99955 * 11 9 8 38 38 H 1.08995 * 109.47152 * 179.97438 * 12 11 9 39 39 H 1.09004 * 109.46796 * 299.99584 * 12 11 9 40 40 H 1.08996 * 109.46711 * 60.00213 * 13 12 11 41 41 H 1.08996 * 109.47059 * 180.02562 * 13 12 11 42 42 H 0.96995 * 120.00085 * 264.99648 * 16 14 13 43 43 H 0.96999 * 120.00395 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47463 * 60.00091 * 25 9 8 45 45 H 1.09004 * 109.46983 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7562 2.6861 2.3460 7 8 4.8199 1.7393 3.1014 8 7 5.5411 3.7630 2.5479 9 6 6.4706 3.7903 3.6799 10 1 6.0251 3.2708 4.5283 11 6 7.7756 3.0960 3.2850 12 6 8.4010 3.8250 2.0940 13 6 8.6920 5.2767 2.4801 14 6 7.3869 5.9709 2.8751 15 1 6.6954 5.9505 2.0328 16 7 7.6657 7.3605 3.2453 17 6 7.7333 8.3267 2.2772 18 1 7.5814 8.0640 1.2407 19 6 7.9969 9.6436 2.6280 20 7 8.0624 10.5721 1.6975 21 14 8.2588 10.0979 4.4209 22 1 9.7009 9.9810 4.7556 23 1 7.8097 11.4950 4.6482 24 1 7.4742 9.1791 5.2842 25 6 6.7616 5.2418 4.0660 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 2.4774 1.2355 2.1130 32 1 3.7400 0.5065 1.0920 33 1 4.3574 2.7562 0.2506 34 1 3.0945 3.4846 1.2718 35 1 5.4904 4.5201 1.9435 36 1 8.4674 3.1167 4.1271 37 1 7.5683 2.0619 3.0099 38 1 9.3308 3.3307 1.8130 39 1 7.7093 3.8048 1.2517 40 1 9.3836 5.2969 3.3224 41 1 9.1371 5.7961 1.6315 42 1 7.8024 7.5964 4.1762 43 1 8.2462 11.4924 1.9427 44 1 5.8319 5.7364 4.3473 45 1 7.4536 5.2620 4.9080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567172298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:15 Heat of formation + Delta-G solvation = -35.984304 kcal Electronic energy + Delta-G solvation = -22017.052914 eV Core-core repulsion = 18840.969881 eV Total energy + Delta-G solvation = -3176.083033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15459 -38.17260 -36.16657 -34.60615 -33.11861 -32.49034 -31.38107 -29.82850 -28.41449 -27.19199 -23.56382 -22.75622 -22.03729 -20.97359 -20.54057 -20.04436 -18.96152 -17.63411 -17.10309 -16.15472 -15.55650 -15.31782 -15.22937 -14.57775 -14.31882 -13.99817 -13.75422 -13.60762 -13.52671 -12.84287 -12.75238 -12.59382 -12.23624 -12.03162 -11.88373 -11.82091 -11.68591 -11.28918 -11.13703 -11.02432 -10.92718 -10.90039 -10.44964 -10.28144 -10.10991 -9.77687 -9.73190 -9.61332 -9.56832 -8.98423 -8.86796 -7.31626 -5.81428 -3.17280 2.01731 2.70936 3.27780 3.34339 3.37427 3.42694 4.52397 4.55201 4.64877 4.76577 4.88066 4.98522 5.03240 5.05764 5.08423 5.29175 5.36405 5.42206 5.46529 5.49708 5.56740 5.58753 5.60313 5.67315 5.75933 5.86486 5.93639 5.95681 6.01227 6.12099 6.14355 6.21984 6.36676 6.38110 6.40232 6.50785 6.61233 6.63951 6.82712 6.96675 7.61159 7.94015 8.30687 8.37609 9.15928 9.88743 10.08259 11.36776 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.003284 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.134930 B = 8524.299571 C = 9151.334619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.098 4.098 5 C -0.144 4.144 6 C 0.512 3.488 7 O -0.549 6.549 8 N -0.720 5.720 9 C 0.151 3.849 10 H 0.083 0.917 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.137 4.137 14 C 0.185 3.815 15 H 0.050 0.950 16 N -0.749 5.749 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.137 4.137 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.069 0.931 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -18.852 -1.091 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.184 4.184 6 C 0.298 3.702 7 O -0.427 6.427 8 N -0.372 5.372 9 C 0.047 3.953 10 H 0.101 0.899 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.177 4.177 14 C 0.076 3.924 15 H 0.068 0.932 16 N -0.391 5.391 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.581 5.581 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.176 4.176 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.240 0.760 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.970 -19.356 -0.759 21.347 hybrid contribution 0.307 0.913 0.925 1.336 sum -8.663 -18.443 0.166 20.377 Atomic orbital electron populations 1.23849 0.96005 1.01774 1.01992 1.22974 0.96020 0.98631 0.99146 1.20822 0.98284 0.95432 0.98909 1.21257 0.97605 0.96273 0.98420 1.21721 0.98435 1.00569 0.97682 1.20693 0.80794 0.82316 0.86349 1.90675 1.69006 1.35476 1.47592 1.46260 1.40239 1.19794 1.30956 1.20899 0.89182 0.96469 0.88799 0.89887 1.21901 0.96382 0.99153 0.99170 1.21494 0.99833 0.96468 0.97500 1.22251 1.00066 0.93781 1.01646 1.20121 0.93686 0.84211 0.94406 0.93183 1.42792 1.86977 1.03336 1.06006 1.19049 1.41177 0.87162 0.89962 0.89238 1.24676 1.01793 0.95785 0.96883 1.69699 1.55866 1.01181 1.31375 0.86552 0.78052 0.77564 0.86353 1.21118 1.21787 1.20319 1.22166 1.01786 0.93659 0.99990 0.88610 0.88677 0.87428 0.91380 0.90830 0.91177 0.91138 0.88811 0.88834 0.76009 0.91303 0.92021 0.92729 0.92437 0.92675 0.91575 0.80638 0.93045 0.91202 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 14.32 29.01 0.42 -1.05 16 2 C -0.15 -1.17 9.52 -36.02 -0.34 -1.52 16 3 C -0.10 -0.74 5.66 -27.88 -0.16 -0.90 16 4 C -0.10 -0.90 4.49 -26.73 -0.12 -1.02 16 5 C -0.14 -1.31 5.70 -27.88 -0.16 -1.47 16 6 C 0.51 6.41 7.79 -10.99 -0.09 6.32 16 7 O -0.55 -8.74 15.65 5.55 0.09 -8.66 16 8 N -0.72 -8.78 4.23 -53.81 -0.23 -9.00 16 9 C 0.15 1.99 2.78 -67.93 -0.19 1.80 16 10 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 11 C -0.13 -1.63 5.60 -26.73 -0.15 -1.78 16 12 C -0.11 -1.53 5.77 -26.73 -0.15 -1.68 16 13 C -0.14 -2.24 5.50 -26.73 -0.15 -2.38 16 14 C 0.19 3.23 2.60 -67.93 -0.18 3.06 16 15 H 0.05 0.88 6.44 -51.93 -0.33 0.55 16 16 N -0.75 -16.76 4.92 -53.42 -0.26 -17.02 16 17 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 21 Si 0.88 21.67 27.73 -169.99 -4.71 16.96 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 25 C -0.14 -2.00 5.07 -26.74 -0.14 -2.13 16 26 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 27 H 0.09 0.61 8.06 -52.49 -0.42 0.18 16 28 H 0.11 0.79 8.06 -52.49 -0.42 0.36 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 4.62 6.87 -40.82 -0.28 4.34 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.36 8.04 5.66 -40.82 -0.23 7.80 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -31.59 357.84 -8.56 -40.15 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.96 Total: 9.57 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.65 Total: -9.45 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.28 Total: -53.97 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.59 -8.56 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567172298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.167 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds