Wall clock time and date at job start Fri Apr 10 2020 17:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 C 1.53000 * 109.46912 * 125.00530 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47291 * 179.97438 * 5 4 3 7 7 O 1.21288 * 120.00038 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00369 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00115 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46862 * 325.00574 * 9 8 6 11 11 C 1.53004 * 109.46672 * 84.99955 * 9 8 6 12 12 C 1.53000 * 109.47368 * 60.00367 * 11 9 8 13 13 C 1.53005 * 109.47332 * 59.99351 * 12 11 9 14 14 C 1.53006 * 109.47088 * 300.00463 * 13 12 11 15 15 H 1.09001 * 109.46662 * 300.00028 * 14 13 12 16 16 N 1.46495 * 109.46851 * 179.97438 * 14 13 12 17 17 C 1.36946 * 119.99771 * 85.00389 * 16 14 13 18 18 H 1.08000 * 119.99437 * 359.97438 * 17 16 14 19 19 C 1.38804 * 119.99887 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00170 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00022 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46921 * 90.00225 * 21 19 17 23 23 H 1.48502 * 109.46945 * 210.00021 * 21 19 17 24 24 H 1.48498 * 109.47174 * 330.00116 * 21 19 17 25 25 C 1.52991 * 109.47005 * 204.99860 * 9 8 6 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99742 * 4 3 2 32 32 H 1.08992 * 109.47399 * 59.99914 * 4 3 2 33 33 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 34 34 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 35 35 H 0.97003 * 119.99640 * 359.97438 * 8 6 5 36 36 H 1.09004 * 109.46822 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47523 * 299.99955 * 11 9 8 38 38 H 1.08995 * 109.47152 * 179.97438 * 12 11 9 39 39 H 1.09004 * 109.46796 * 299.99584 * 12 11 9 40 40 H 1.08996 * 109.46711 * 60.00213 * 13 12 11 41 41 H 1.08996 * 109.47059 * 180.02562 * 13 12 11 42 42 H 0.96995 * 120.00085 * 264.99648 * 16 14 13 43 43 H 0.96999 * 120.00395 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47463 * 60.00091 * 25 9 8 45 45 H 1.09004 * 109.46983 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7562 2.6861 2.3460 7 8 4.8199 1.7393 3.1014 8 7 5.5411 3.7630 2.5479 9 6 6.4706 3.7903 3.6799 10 1 6.0251 3.2708 4.5283 11 6 7.7756 3.0960 3.2850 12 6 8.4010 3.8250 2.0940 13 6 8.6920 5.2767 2.4801 14 6 7.3869 5.9709 2.8751 15 1 6.6954 5.9505 2.0328 16 7 7.6657 7.3605 3.2453 17 6 7.7333 8.3267 2.2772 18 1 7.5814 8.0640 1.2407 19 6 7.9969 9.6436 2.6280 20 7 8.0624 10.5721 1.6975 21 14 8.2588 10.0979 4.4209 22 1 9.7009 9.9810 4.7556 23 1 7.8097 11.4950 4.6482 24 1 7.4742 9.1791 5.2842 25 6 6.7616 5.2418 4.0660 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 2.4774 1.2355 2.1130 32 1 3.7400 0.5065 1.0920 33 1 4.3574 2.7562 0.2506 34 1 3.0945 3.4846 1.2718 35 1 5.4904 4.5201 1.9435 36 1 8.4674 3.1167 4.1271 37 1 7.5683 2.0619 3.0099 38 1 9.3308 3.3307 1.8130 39 1 7.7093 3.8048 1.2517 40 1 9.3836 5.2969 3.3224 41 1 9.1371 5.7961 1.6315 42 1 7.8024 7.5964 4.1762 43 1 8.2462 11.4924 1.9427 44 1 5.8319 5.7364 4.3473 45 1 7.4536 5.2620 4.9080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567172298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:14 Heat of formation + Delta-G solvation = -55.078272 kcal Electronic energy + Delta-G solvation = -22017.880891 eV Core-core repulsion = 18840.969881 eV Total energy + Delta-G solvation = -3176.911010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22851 -39.36264 -36.87575 -36.19709 -34.40961 -33.38240 -33.08187 -30.99117 -29.91928 -27.94098 -25.38197 -23.72546 -23.11659 -22.41064 -21.46398 -20.66883 -20.27750 -19.45662 -18.09558 -17.00907 -16.75218 -16.57787 -16.35087 -15.97954 -15.37752 -15.25973 -14.99850 -14.66499 -14.55698 -14.36478 -14.14066 -13.73362 -13.33967 -13.08020 -13.03066 -12.97614 -12.84419 -12.57818 -12.42594 -12.38835 -11.96183 -11.80839 -11.74756 -11.62898 -11.59436 -11.51649 -11.02845 -10.87382 -10.78032 -10.16892 -9.96481 -9.27766 -7.99560 -5.32265 1.39794 1.42257 1.43735 1.49584 1.73488 2.32564 2.50675 3.32197 3.46768 3.81678 3.87997 3.89504 3.93020 4.10167 4.18897 4.28861 4.34572 4.35834 4.41790 4.53433 4.64384 4.68723 4.69233 4.71917 4.79440 4.82548 4.95877 4.97447 5.08951 5.10963 5.17430 5.21366 5.25900 5.37560 5.42125 5.50463 5.54559 5.67300 5.80146 5.81425 5.93064 6.24748 6.62965 7.11260 7.32838 7.88166 8.05976 9.21829 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.003284 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.134930 B = 8524.299571 C = 9151.334619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.092 4.092 4 C -0.092 4.092 5 C -0.139 4.139 6 C 0.510 3.490 7 O -0.585 6.585 8 N -0.717 5.717 9 C 0.156 3.844 10 H 0.081 0.919 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.179 3.821 15 H 0.049 0.951 16 N -0.753 5.753 17 C -0.222 4.222 18 H 0.060 0.940 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.952 3.048 22 H -0.282 1.282 23 H -0.300 1.300 24 H -0.250 1.250 25 C -0.125 4.125 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.408 0.592 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 -20.185 -0.179 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.182 4.182 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.179 4.179 6 C 0.298 3.702 7 O -0.466 6.466 8 N -0.370 5.370 9 C 0.051 3.949 10 H 0.099 0.901 11 C -0.159 4.159 12 C -0.143 4.143 13 C -0.170 4.170 14 C 0.072 3.928 15 H 0.067 0.933 16 N -0.395 5.395 17 C -0.353 4.353 18 H 0.078 0.922 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.780 3.220 22 H -0.209 1.209 23 H -0.227 1.227 24 H -0.174 1.174 25 C -0.163 4.163 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.468 -20.746 0.160 22.805 hybrid contribution 0.434 1.238 0.564 1.428 sum -9.033 -19.508 0.724 21.510 Atomic orbital electron populations 1.24014 0.95996 1.02467 1.01217 1.23089 0.96375 0.98900 0.99867 1.20783 0.98060 0.95572 0.98500 1.21176 0.97477 0.95985 0.98369 1.21766 0.98126 1.01028 0.96930 1.21262 0.80714 0.81537 0.86652 1.90662 1.70109 1.36743 1.49088 1.46259 1.40012 1.19986 1.30694 1.20799 0.89637 0.95289 0.89177 0.90130 1.21845 0.96200 0.98713 0.99169 1.21400 1.00654 0.94341 0.97894 1.22099 0.98986 0.95351 1.00543 1.20360 0.94460 0.82194 0.95817 0.93349 1.42832 1.86973 1.04500 1.05218 1.19015 1.38529 0.88053 0.89695 0.92220 1.25466 1.02989 0.95926 1.01387 1.69878 1.58475 1.01443 1.33807 0.85455 0.78179 0.77068 0.81336 1.20880 1.22724 1.17436 1.22024 1.01581 0.93984 0.98758 0.88131 0.87885 0.87337 0.90734 0.89838 0.92877 0.92325 0.86796 0.87127 0.75478 0.90236 0.92174 0.91487 0.92105 0.92553 0.94309 0.80278 0.93537 0.91372 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.68 14.32 67.78 0.97 -1.70 16 2 C -0.16 -2.38 9.52 25.65 0.24 -2.13 16 3 C -0.09 -1.24 5.66 29.85 0.17 -1.07 16 4 C -0.09 -1.58 4.49 30.59 0.14 -1.45 16 5 C -0.14 -2.23 5.70 29.85 0.17 -2.06 16 6 C 0.51 11.94 7.79 87.66 0.68 12.62 16 7 O -0.59 -18.04 15.65 -3.05 -0.05 -18.09 16 8 N -0.72 -16.10 4.23 -442.53 -1.87 -17.97 16 9 C 0.16 3.76 2.78 44.99 0.13 3.89 16 10 H 0.08 2.06 7.58 -2.39 -0.02 2.05 16 11 C -0.12 -2.78 5.60 30.60 0.17 -2.61 16 12 C -0.10 -2.56 5.77 30.60 0.18 -2.38 16 13 C -0.13 -4.05 5.50 30.60 0.17 -3.88 16 14 C 0.18 5.99 2.60 44.99 0.12 6.11 16 15 H 0.05 1.64 6.44 -2.39 -0.02 1.63 16 16 N -0.75 -32.72 4.92 -322.94 -1.59 -34.31 16 17 C -0.22 -12.04 10.41 84.03 0.87 -11.16 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.99 -62.04 13.97 21.65 0.30 -61.73 16 21 Si 0.95 44.52 27.73 68.60 1.90 46.42 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 25 C -0.12 -3.34 5.07 30.59 0.16 -3.18 16 26 H 0.10 1.22 7.84 -2.91 -0.02 1.20 16 27 H 0.10 1.17 8.06 -2.91 -0.02 1.15 16 28 H 0.11 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.41 8.53 6.87 -92.71 -0.64 7.90 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.45 7.60 -2.38 -0.02 1.44 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.36 15.35 5.66 -92.71 -0.52 14.82 16 43 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -68.52 357.84 3.06 -65.46 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.27 Total: 32.57 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.63 Total: -12.36 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -3.16 Total: -114.01 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Total: -68.52 3.06 -65.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567172298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.383 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds