Wall clock time and date at job start Fri Apr 10 2020 17:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46929 * 2 1 4 4 C 1.50704 * 119.99639 * 262.67472 * 3 2 1 5 5 C 1.32994 * 120.00510 * 82.66940 * 3 2 1 6 6 C 1.47109 * 119.99686 * 353.50797 * 5 3 2 7 7 O 1.21619 * 119.99798 * 1.34440 * 6 5 3 8 8 N 1.34773 * 119.99983 * 181.33766 * 6 5 3 9 9 C 1.46930 * 120.63130 * 5.17719 * 8 6 5 10 10 C 1.53190 * 108.77459 * 233.60589 * 9 8 6 11 11 C 1.53038 * 109.31306 * 305.36390 * 10 9 8 12 12 C 1.53041 * 109.53988 * 61.36412 * 11 10 9 13 13 H 1.09001 * 109.49680 * 58.62181 * 12 11 10 14 14 N 1.46500 * 109.49829 * 178.68428 * 12 11 10 15 15 C 1.46496 * 120.00059 * 59.72492 * 14 12 11 16 16 C 1.36937 * 119.99750 * 240.00037 * 14 12 11 17 17 H 1.08000 * 120.00452 * 347.30031 * 16 14 12 18 18 C 1.38816 * 119.99513 * 167.29503 * 16 14 12 19 19 N 1.31610 * 120.00410 * 333.57989 * 18 16 14 20 20 Si 1.86805 * 119.99682 * 153.58070 * 18 16 14 21 21 H 1.48495 * 109.47348 * 84.99852 * 20 18 16 22 22 H 1.48496 * 109.46862 * 205.00214 * 20 18 16 23 23 H 1.48502 * 109.46768 * 324.99766 * 20 18 16 24 24 C 1.46921 * 120.63076 * 185.16995 * 8 6 5 25 25 H 1.09001 * 109.46910 * 60.00518 * 1 2 3 26 26 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47401 * 300.00211 * 1 2 3 28 28 H 1.08991 * 109.47401 * 239.99789 * 2 1 3 29 29 H 1.09001 * 109.46910 * 119.99482 * 2 1 3 30 30 H 1.08998 * 109.46632 * 269.99364 * 4 3 2 31 31 H 1.08991 * 109.47313 * 30.00276 * 4 3 2 32 32 H 1.09002 * 109.47071 * 150.00355 * 4 3 2 33 33 H 1.07998 * 120.00294 * 173.50146 * 5 3 2 34 34 H 1.08992 * 109.58836 * 113.81658 * 9 8 6 35 35 H 1.09007 * 109.58526 * 353.39235 * 9 8 6 36 36 H 1.08996 * 109.49807 * 185.41267 * 10 9 8 37 37 H 1.09004 * 109.49736 * 65.31502 * 10 9 8 38 38 H 1.08999 * 109.45679 * 301.34291 * 11 10 9 39 39 H 1.08997 * 109.46207 * 181.38684 * 11 10 9 40 40 H 1.08997 * 109.47454 * 271.03363 * 15 14 12 41 41 H 1.09008 * 109.47222 * 31.03511 * 15 14 12 42 42 H 1.09003 * 109.47303 * 151.03368 * 15 14 12 43 43 H 0.96998 * 120.00387 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.59136 * 6.61377 * 24 8 6 45 45 H 1.09001 * 109.59106 * 246.17991 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4404 2.0757 -1.2945 5 6 2.1155 2.0969 1.1423 6 6 1.5852 1.5117 2.3835 7 8 1.0929 0.3997 2.3696 8 7 1.6451 2.2079 3.5359 9 6 2.1325 3.5939 3.5488 10 6 3.2598 3.7106 4.5795 11 6 2.7597 3.2075 5.9356 12 6 2.3615 1.7344 5.8199 13 1 3.2201 1.1504 5.4882 14 7 1.9127 1.2452 7.1259 15 6 0.7687 1.8746 7.7902 16 6 2.5660 0.2032 7.7282 17 1 3.2715 -0.3896 7.1651 18 6 2.3214 -0.0908 9.0626 19 7 1.9130 0.8556 9.8809 20 14 2.5718 -1.8300 9.6967 21 1 3.9979 -2.0228 10.0632 22 1 1.7194 -2.0482 10.8930 23 1 2.1970 -2.8016 8.6381 24 6 1.2241 1.5953 4.8032 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.4997 1.8940 -1.4755 31 1 1.8548 1.6580 -2.1134 32 1 2.2617 3.1491 -1.2308 33 1 2.5723 3.0753 1.1587 34 1 1.3179 4.2652 3.8206 35 1 2.5116 3.8572 2.5613 36 1 3.5651 4.7531 4.6683 37 1 4.1097 3.1081 4.2589 38 1 1.8946 3.7944 6.2440 39 1 3.5522 3.3124 6.6766 40 1 1.1172 2.7035 8.4063 41 1 0.0725 2.2478 7.0390 42 1 0.2651 1.1408 8.4195 43 1 1.7418 0.6500 10.8133 44 1 1.0038 0.5398 4.6436 45 1 0.3354 2.1036 5.1774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567191953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:18 Heat of formation + Delta-G solvation = 5.897034 kcal Electronic energy + Delta-G solvation = -22975.281531 eV Core-core repulsion = 19801.014609 eV Total energy + Delta-G solvation = -3174.266922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.08099 -37.84836 -35.76463 -35.04455 -32.38170 -31.29973 -30.81367 -29.16979 -27.82975 -26.00831 -24.98635 -23.82633 -23.26903 -21.63100 -20.43971 -18.75876 -17.90305 -17.24203 -16.70271 -15.56140 -15.08440 -14.72117 -14.67134 -14.03772 -14.00517 -13.79978 -13.66392 -13.48041 -12.94455 -12.78840 -12.67257 -12.48260 -12.34922 -12.20516 -11.96492 -11.83344 -11.11256 -11.03831 -10.94579 -10.86809 -10.73920 -10.51776 -10.35292 -10.26772 -10.12197 -9.82173 -9.70411 -9.20234 -9.12183 -8.49225 -8.16610 -6.84842 -5.76996 -3.05311 1.40794 3.30820 3.42409 3.49078 3.49745 3.54816 4.54021 4.61375 4.65860 4.89241 5.13378 5.21875 5.24891 5.28587 5.35542 5.38908 5.43750 5.57726 5.59969 5.62416 5.66003 5.68993 5.79929 5.88752 5.97466 6.03790 6.19028 6.21788 6.26492 6.38822 6.40672 6.46733 6.54200 6.64488 6.70849 6.85481 6.96669 7.02963 7.37315 7.63391 7.77171 7.84793 8.35265 8.51781 9.22347 9.89221 10.34974 11.31124 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.004331 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.741941 B = 6463.956051 C = 7214.209275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.036 4.036 4 C -0.125 4.125 5 C -0.231 4.231 6 C 0.541 3.459 7 O -0.538 6.538 8 N -0.603 5.603 9 C 0.107 3.893 10 C -0.133 4.133 11 C -0.133 4.133 12 C 0.170 3.830 13 H 0.064 0.936 14 N -0.593 5.593 15 C 0.158 3.842 16 C -0.257 4.257 17 H 0.072 0.928 18 C 0.003 3.997 19 N -0.899 5.899 20 Si 0.892 3.108 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.099 3.901 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.000 1.000 42 H 0.056 0.944 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 6.919 -19.477 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 C -0.038 4.038 4 C -0.181 4.181 5 C -0.251 4.251 6 C 0.332 3.668 7 O -0.418 6.418 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.171 4.171 11 C -0.173 4.173 12 C 0.060 3.940 13 H 0.082 0.918 14 N -0.314 5.314 15 C 0.014 3.986 16 C -0.386 4.386 17 H 0.089 0.911 18 C -0.196 4.196 19 N -0.544 5.544 20 Si 0.722 3.278 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.025 4.025 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.018 0.982 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.089 6.317 -19.241 20.252 hybrid contribution 0.270 -0.576 0.623 0.891 sum 0.181 5.742 -18.618 19.484 Atomic orbital electron populations 1.21575 0.94333 1.01659 1.01376 1.20910 0.97065 0.92472 1.03124 1.22565 0.91231 0.95799 0.94178 1.20979 1.01991 1.00501 0.94670 1.22522 1.07569 1.02211 0.92839 1.18508 0.79403 0.85150 0.83721 1.90722 1.45666 1.19805 1.85652 1.48075 1.64108 1.13687 1.07735 1.21791 0.97024 0.82744 1.00002 1.21939 0.97818 1.01096 0.96293 1.22122 1.01166 0.98669 0.95321 1.20556 0.94395 0.92664 0.86339 0.91779 1.43991 1.32876 1.38081 1.16466 1.20806 0.87520 0.97130 0.93194 1.19207 1.21908 1.04336 0.93103 0.91061 1.24712 1.01731 0.97713 0.95403 1.70201 1.50434 1.30113 1.03607 0.86461 0.77454 0.85840 0.78083 1.21504 1.21584 1.20620 1.22349 0.98580 0.99573 0.81965 0.94213 0.92866 0.91304 0.92623 0.87998 0.90607 0.91075 0.91294 0.85618 0.91689 0.90119 0.91409 0.91803 0.92496 0.91576 0.96444 0.98153 0.92532 0.93764 0.89201 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.30 37.16 0.35 -1.29 16 2 C -0.10 -1.20 5.35 -27.88 -0.15 -1.35 16 3 C -0.04 -0.39 5.37 -101.16 -0.54 -0.93 16 4 C -0.12 -0.92 10.01 36.01 0.36 -0.56 16 5 C -0.23 -2.78 8.95 -37.80 -0.34 -3.12 16 6 C 0.54 8.55 7.36 -12.66 -0.09 8.45 16 7 O -0.54 -9.97 10.53 5.26 0.06 -9.92 16 8 N -0.60 -9.44 2.97 -174.16 -0.52 -9.96 16 9 C 0.11 1.31 6.35 -3.71 -0.02 1.29 16 10 C -0.13 -1.75 6.08 -26.61 -0.16 -1.91 16 11 C -0.13 -2.34 5.14 -26.69 -0.14 -2.47 16 12 C 0.17 3.50 2.75 -67.81 -0.19 3.31 16 13 H 0.06 1.40 7.80 -51.93 -0.41 1.00 16 14 N -0.59 -14.86 2.82 -173.34 -0.49 -15.35 16 15 C 0.16 3.87 8.16 59.84 0.49 4.36 16 16 C -0.26 -7.16 9.63 -15.06 -0.15 -7.31 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C 0.00 0.07 4.80 -17.43 -0.08 -0.01 16 19 N -0.90 -26.31 11.00 55.49 0.61 -25.69 16 20 Si 0.89 22.13 29.63 -169.99 -5.04 17.09 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.10 1.86 5.77 -3.71 -0.02 1.84 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.02 6.17 -51.93 -0.32 0.70 16 28 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.10 1.54 5.98 -51.93 -0.31 1.22 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 33 H 0.13 1.20 5.86 -52.49 -0.31 0.89 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.77 5.30 -51.92 -0.28 0.49 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.45 7.90 -51.93 -0.41 0.04 16 41 H 0.00 0.00 6.35 -51.92 -0.33 -0.33 16 42 H 0.06 1.52 6.58 -51.93 -0.34 1.17 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 1.91 7.04 -51.93 -0.37 1.55 16 45 H 0.06 1.15 6.49 -51.93 -0.34 0.81 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -30.95 343.88 -8.45 -39.40 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.57 Total: -1.07 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.69 Total: 0.32 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.40 Total: -51.00 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.06 Total: -9.92 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.04 Total: 17.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.95 -8.45 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567191953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.301 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds