Wall clock time and date at job start Fri Apr 10 2020 17:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46929 * 2 1 4 4 C 1.50704 * 119.99639 * 262.67472 * 3 2 1 5 5 C 1.32994 * 120.00510 * 82.66940 * 3 2 1 6 6 C 1.47109 * 119.99686 * 353.50797 * 5 3 2 7 7 O 1.21619 * 119.99798 * 1.34440 * 6 5 3 8 8 N 1.34773 * 119.99983 * 181.33766 * 6 5 3 9 9 C 1.46930 * 120.63130 * 5.17719 * 8 6 5 10 10 C 1.53190 * 108.77459 * 233.60589 * 9 8 6 11 11 C 1.53038 * 109.31306 * 305.36390 * 10 9 8 12 12 C 1.53041 * 109.53988 * 61.36412 * 11 10 9 13 13 H 1.09001 * 109.49680 * 58.62181 * 12 11 10 14 14 N 1.46500 * 109.49829 * 178.68428 * 12 11 10 15 15 C 1.46496 * 120.00059 * 59.72492 * 14 12 11 16 16 C 1.36937 * 119.99750 * 240.00037 * 14 12 11 17 17 H 1.08000 * 120.00452 * 347.30031 * 16 14 12 18 18 C 1.38816 * 119.99513 * 167.29503 * 16 14 12 19 19 N 1.31610 * 120.00410 * 333.57989 * 18 16 14 20 20 Si 1.86805 * 119.99682 * 153.58070 * 18 16 14 21 21 H 1.48495 * 109.47348 * 84.99852 * 20 18 16 22 22 H 1.48496 * 109.46862 * 205.00214 * 20 18 16 23 23 H 1.48502 * 109.46768 * 324.99766 * 20 18 16 24 24 C 1.46921 * 120.63076 * 185.16995 * 8 6 5 25 25 H 1.09001 * 109.46910 * 60.00518 * 1 2 3 26 26 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47401 * 300.00211 * 1 2 3 28 28 H 1.08991 * 109.47401 * 239.99789 * 2 1 3 29 29 H 1.09001 * 109.46910 * 119.99482 * 2 1 3 30 30 H 1.08998 * 109.46632 * 269.99364 * 4 3 2 31 31 H 1.08991 * 109.47313 * 30.00276 * 4 3 2 32 32 H 1.09002 * 109.47071 * 150.00355 * 4 3 2 33 33 H 1.07998 * 120.00294 * 173.50146 * 5 3 2 34 34 H 1.08992 * 109.58836 * 113.81658 * 9 8 6 35 35 H 1.09007 * 109.58526 * 353.39235 * 9 8 6 36 36 H 1.08996 * 109.49807 * 185.41267 * 10 9 8 37 37 H 1.09004 * 109.49736 * 65.31502 * 10 9 8 38 38 H 1.08999 * 109.45679 * 301.34291 * 11 10 9 39 39 H 1.08997 * 109.46207 * 181.38684 * 11 10 9 40 40 H 1.08997 * 109.47454 * 271.03363 * 15 14 12 41 41 H 1.09008 * 109.47222 * 31.03511 * 15 14 12 42 42 H 1.09003 * 109.47303 * 151.03368 * 15 14 12 43 43 H 0.96998 * 120.00387 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.59136 * 6.61377 * 24 8 6 45 45 H 1.09001 * 109.59106 * 246.17991 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4404 2.0757 -1.2945 5 6 2.1155 2.0969 1.1423 6 6 1.5852 1.5117 2.3835 7 8 1.0929 0.3997 2.3696 8 7 1.6451 2.2079 3.5359 9 6 2.1325 3.5939 3.5488 10 6 3.2598 3.7106 4.5795 11 6 2.7597 3.2075 5.9356 12 6 2.3615 1.7344 5.8199 13 1 3.2201 1.1504 5.4882 14 7 1.9127 1.2452 7.1259 15 6 0.7687 1.8746 7.7902 16 6 2.5660 0.2032 7.7282 17 1 3.2715 -0.3896 7.1651 18 6 2.3214 -0.0908 9.0626 19 7 1.9130 0.8556 9.8809 20 14 2.5718 -1.8300 9.6967 21 1 3.9979 -2.0228 10.0632 22 1 1.7194 -2.0482 10.8930 23 1 2.1970 -2.8016 8.6381 24 6 1.2241 1.5953 4.8032 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.4997 1.8940 -1.4755 31 1 1.8548 1.6580 -2.1134 32 1 2.2617 3.1491 -1.2308 33 1 2.5723 3.0753 1.1587 34 1 1.3179 4.2652 3.8206 35 1 2.5116 3.8572 2.5613 36 1 3.5651 4.7531 4.6683 37 1 4.1097 3.1081 4.2589 38 1 1.8946 3.7944 6.2440 39 1 3.5522 3.3124 6.6766 40 1 1.1172 2.7035 8.4063 41 1 0.0725 2.2478 7.0390 42 1 0.2651 1.1408 8.4195 43 1 1.7418 0.6500 10.8133 44 1 1.0038 0.5398 4.6436 45 1 0.3354 2.1036 5.1774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567191953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:17 Heat of formation + Delta-G solvation = -11.808320 kcal Electronic energy + Delta-G solvation = -22976.049293 eV Core-core repulsion = 19801.014609 eV Total energy + Delta-G solvation = -3175.034684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.30586 -39.22704 -37.04607 -36.48443 -34.02058 -32.86612 -31.80982 -30.66824 -28.81522 -28.08442 -26.19922 -25.36586 -24.45927 -23.03688 -21.76505 -20.21170 -19.03773 -18.71288 -18.33077 -17.09981 -16.53289 -16.13830 -15.79525 -15.75770 -15.29179 -15.07572 -14.96687 -14.52596 -14.42627 -14.03096 -13.87172 -13.77155 -13.58599 -13.36760 -13.11872 -12.97137 -12.80671 -12.76763 -12.48124 -12.30771 -12.18094 -11.97068 -11.95331 -11.84923 -11.71437 -11.48796 -11.34791 -10.58426 -10.37003 -10.06096 -9.52823 -8.86804 -7.92931 -5.22877 0.46947 1.41697 1.45436 1.55210 2.09389 2.37064 2.50695 3.20304 3.58931 3.67390 3.83050 3.97360 4.06246 4.09916 4.22500 4.28341 4.36183 4.47494 4.56471 4.63359 4.70130 4.70846 4.73905 4.77030 4.88116 4.89823 4.91856 4.98738 5.04705 5.11414 5.16486 5.24145 5.30852 5.41166 5.44569 5.46517 5.53500 5.56617 5.64132 5.65512 5.77827 6.24690 6.60509 7.08900 7.32215 7.83782 8.24630 9.13557 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.004331 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.741941 B = 6463.956051 C = 7214.209275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.023 4.023 4 C -0.121 4.121 5 C -0.244 4.244 6 C 0.529 3.471 7 O -0.577 6.577 8 N -0.607 5.607 9 C 0.106 3.894 10 C -0.122 4.122 11 C -0.124 4.124 12 C 0.168 3.832 13 H 0.043 0.957 14 N -0.610 5.610 15 C 0.176 3.824 16 C -0.270 4.270 17 H 0.065 0.935 18 C -0.046 4.046 19 N -0.927 5.927 20 Si 0.955 3.045 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.117 3.883 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.041 0.959 40 H -0.001 1.001 41 H 0.030 0.970 42 H 0.027 0.973 43 H 0.250 0.750 44 H 0.055 0.945 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 8.604 -22.468 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C -0.025 4.025 4 C -0.177 4.177 5 C -0.264 4.264 6 C 0.323 3.677 7 O -0.460 6.460 8 N -0.340 5.340 9 C -0.016 4.016 10 C -0.161 4.161 11 C -0.163 4.163 12 C 0.060 3.940 13 H 0.062 0.938 14 N -0.332 5.332 15 C 0.031 3.969 16 C -0.400 4.400 17 H 0.083 0.917 18 C -0.241 4.241 19 N -0.573 5.573 20 Si 0.783 3.217 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.206 1.206 24 C -0.008 4.008 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.177 0.823 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.017 0.983 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.656 8.034 -22.274 23.688 hybrid contribution 0.044 -1.149 1.459 1.857 sum 0.700 6.885 -20.815 21.936 Atomic orbital electron populations 1.21506 0.94618 1.01382 1.00992 1.20886 0.96884 0.93809 1.02473 1.22898 0.89184 0.94733 0.95682 1.21055 1.02955 1.01259 0.92463 1.22542 1.09125 1.03783 0.90970 1.19305 0.78841 0.84748 0.84823 1.90721 1.47320 1.21633 1.86314 1.48149 1.64311 1.15124 1.06372 1.22083 0.97065 0.80680 1.01741 1.21893 0.97960 1.02835 0.93401 1.21943 1.00433 0.96152 0.97810 1.20691 0.94238 0.94350 0.84676 0.93843 1.44194 1.33097 1.38169 1.17780 1.20531 0.87630 0.95458 0.93291 1.19453 1.21850 1.05290 0.93371 0.91736 1.25400 1.02279 1.00812 0.95627 1.70309 1.51838 1.31530 1.03613 0.85486 0.77473 0.81497 0.77259 1.20823 1.21474 1.20590 1.21797 0.97625 0.97989 0.83406 0.91813 0.93242 0.94213 0.90310 0.91577 0.89063 0.89924 0.89476 0.82331 0.90301 0.86282 0.87911 0.92010 0.92446 0.93995 0.98307 0.95188 0.95443 0.94045 0.92626 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.30 71.98 0.67 -2.40 16 2 C -0.10 -2.40 5.35 29.85 0.16 -2.24 16 3 C -0.02 -0.43 5.37 -17.61 -0.09 -0.53 16 4 C -0.12 -1.22 10.01 71.24 0.71 -0.50 16 5 C -0.24 -5.18 8.95 23.43 0.21 -4.97 16 6 C 0.53 16.45 7.36 86.57 0.64 17.09 16 7 O -0.58 -22.22 10.53 -4.09 -0.04 -22.26 16 8 N -0.61 -18.45 2.97 -823.17 -2.45 -20.90 16 9 C 0.11 2.22 6.35 86.36 0.55 2.77 16 10 C -0.12 -2.88 6.08 30.67 0.19 -2.69 16 11 C -0.12 -4.30 5.14 30.62 0.16 -4.14 16 12 C 0.17 7.13 2.75 45.07 0.12 7.25 16 13 H 0.04 1.98 7.80 -2.39 -0.02 1.97 16 14 N -0.61 -31.71 2.82 -702.33 -1.98 -33.69 16 15 C 0.18 8.88 8.16 127.77 1.04 9.92 16 16 C -0.27 -15.60 9.63 84.03 0.81 -14.79 16 17 H 0.06 3.72 7.83 -2.91 -0.02 3.69 16 18 C -0.05 -2.63 4.80 84.86 0.41 -2.23 16 19 N -0.93 -55.79 11.00 21.65 0.24 -55.56 16 20 Si 0.95 46.70 29.63 68.60 2.03 48.73 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 C 0.12 4.51 5.77 86.36 0.50 5.00 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 1.19 6.17 -2.39 -0.01 1.17 16 28 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 29 H 0.07 2.05 5.98 -2.39 -0.01 2.03 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 32 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 33 H 0.16 2.22 5.86 -2.91 -0.02 2.20 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.12 1.65 5.30 -2.38 -0.01 1.63 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.98 7.71 -2.39 -0.02 1.96 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.00 -0.07 7.90 -2.39 -0.02 -0.09 16 41 H 0.03 1.30 6.35 -2.38 -0.02 1.29 16 42 H 0.03 1.51 6.58 -2.39 -0.02 1.50 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.06 2.51 7.04 -2.39 -0.02 2.49 16 45 H 0.06 2.30 6.49 -2.39 -0.02 2.28 16 Total: -1.00 -71.75 343.88 4.82 -66.93 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.96 Total: 9.22 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.07 Total: 7.53 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.19 Total: -110.14 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.04 Total: -22.26 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -71.75 4.82 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567191953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.123 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds