Wall clock time and date at job start Fri Apr 10 2020 17:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46738 * 2 1 4 4 C 1.50694 * 120.00431 * 274.99839 * 3 2 1 5 5 C 1.32998 * 119.99756 * 95.00303 * 3 2 1 6 6 C 1.47102 * 119.99665 * 171.77097 * 5 3 2 7 7 O 1.21615 * 120.00480 * 353.04145 * 6 5 3 8 8 N 1.34783 * 119.99768 * 173.04258 * 6 5 3 9 9 C 1.46922 * 120.63062 * 355.02775 * 8 6 5 10 10 C 1.53197 * 108.77322 * 233.60833 * 9 8 6 11 11 C 1.53039 * 109.31038 * 305.36392 * 10 9 8 12 12 C 1.53034 * 109.54181 * 61.36456 * 11 10 9 13 13 H 1.09000 * 109.49475 * 58.61792 * 12 11 10 14 14 N 1.46496 * 109.50165 * 178.68400 * 12 11 10 15 15 C 1.46499 * 119.99889 * 59.72406 * 14 12 11 16 16 C 1.36937 * 120.00143 * 240.00114 * 14 12 11 17 17 H 1.08001 * 120.00240 * 337.00147 * 16 14 12 18 18 C 1.38812 * 120.00417 * 156.99413 * 16 14 12 19 19 N 1.31621 * 119.99771 * 348.12400 * 18 16 14 20 20 Si 1.86795 * 120.00520 * 168.12027 * 18 16 14 21 21 H 1.48503 * 109.47147 * 90.00020 * 20 18 16 22 22 H 1.48501 * 109.47390 * 210.00469 * 20 18 16 23 23 H 1.48507 * 109.46956 * 330.00164 * 20 18 16 24 24 C 1.46930 * 120.63073 * 175.02047 * 8 6 5 25 25 H 1.09008 * 109.46835 * 299.99445 * 1 2 3 26 26 H 1.08997 * 109.47447 * 59.99569 * 1 2 3 27 27 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46815 * 240.00516 * 2 1 3 29 29 H 1.09000 * 109.47172 * 120.00003 * 2 1 3 30 30 H 1.08999 * 109.47470 * 263.75415 * 4 3 2 31 31 H 1.09006 * 109.46601 * 23.75002 * 4 3 2 32 32 H 1.09005 * 109.47500 * 143.74491 * 4 3 2 33 33 H 1.07995 * 120.00352 * 351.77395 * 5 3 2 34 34 H 1.08996 * 109.58885 * 113.81766 * 9 8 6 35 35 H 1.08997 * 109.58575 * 353.39352 * 9 8 6 36 36 H 1.08994 * 109.49658 * 185.41303 * 10 9 8 37 37 H 1.09000 * 109.49994 * 65.31228 * 10 9 8 38 38 H 1.09003 * 109.46142 * 301.34308 * 11 10 9 39 39 H 1.08998 * 109.45868 * 181.38762 * 11 10 9 40 40 H 1.09004 * 109.47090 * 268.22655 * 15 14 12 41 41 H 1.08995 * 109.47033 * 28.23002 * 15 14 12 42 42 H 1.09007 * 109.47126 * 148.22701 * 15 14 12 43 43 H 0.97003 * 119.99943 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.58262 * 6.61227 * 24 8 6 45 45 H 1.08993 * 109.58855 * 246.18075 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1762 2.1692 -1.3000 5 6 2.3486 2.0143 1.1474 6 6 3.0069 3.3297 1.1380 7 8 3.3761 3.8176 0.0870 8 7 3.2009 3.9945 2.2944 9 6 2.6650 3.4704 3.5581 10 6 1.8242 4.5621 4.2275 11 6 2.6688 5.8291 4.3803 12 6 3.0971 6.3285 2.9986 13 1 2.2126 6.5289 2.3939 14 7 3.8791 7.5587 3.1439 15 6 5.1200 7.5502 3.9225 16 6 3.4472 8.7180 2.5568 17 1 2.7768 8.6778 1.7110 18 6 3.8708 9.9450 3.0487 19 7 4.4906 10.0106 4.2080 20 14 3.5615 11.5028 2.0655 21 1 2.2495 12.0805 2.4532 22 1 4.6379 12.4868 2.3455 23 1 3.5512 11.1795 0.6161 24 6 3.9524 5.2569 2.3152 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2073 2.1002 -1.6468 31 1 1.5120 1.7326 -2.0460 32 1 1.9133 3.2160 -1.1478 33 1 2.1222 1.5304 2.0860 34 1 3.4878 3.1886 4.2150 35 1 2.0406 2.5999 3.3571 36 1 1.5000 4.2202 5.2103 37 1 0.9517 4.7787 3.6111 38 1 3.5538 5.6060 4.9761 39 1 2.0806 6.5997 4.8786 40 1 4.9018 7.8158 4.9569 41 1 5.5633 6.5550 3.8886 42 1 5.8183 8.2735 3.5012 43 1 4.7871 10.8680 4.5516 44 1 4.1772 5.5651 1.2941 45 1 4.8801 5.1207 2.8708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567191954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:21 Heat of formation + Delta-G solvation = -2.160893 kcal Electronic energy + Delta-G solvation = -22766.890517 eV Core-core repulsion = 19592.274177 eV Total energy + Delta-G solvation = -3174.616340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.00072 -37.73660 -36.06341 -35.03371 -32.28834 -31.38705 -30.96360 -28.98984 -27.61081 -25.97489 -25.13033 -24.06519 -23.31675 -21.60148 -20.33921 -18.78945 -17.85266 -17.20717 -16.68073 -15.53411 -15.14952 -14.87144 -14.55428 -14.34402 -14.01806 -13.90126 -13.72548 -13.17756 -13.11920 -12.65621 -12.64003 -12.53413 -12.28302 -12.17977 -12.00288 -11.62393 -11.52437 -11.13969 -10.97111 -10.86868 -10.82874 -10.55812 -10.35548 -10.24550 -10.06955 -9.84317 -9.71076 -9.30911 -9.12581 -8.55323 -8.19576 -6.71103 -5.69715 -3.15123 1.40602 3.31049 3.41168 3.47460 3.49361 3.50995 4.48425 4.53230 4.65547 4.87524 5.02579 5.05620 5.11646 5.24211 5.33724 5.37354 5.48766 5.52883 5.59906 5.63260 5.66324 5.67756 5.81285 5.83747 5.90867 5.93630 6.04987 6.10281 6.22279 6.28495 6.43857 6.48309 6.49064 6.62326 6.73866 6.87750 7.00441 7.06014 7.42578 7.74635 7.77379 7.85089 8.42748 8.51546 9.27243 9.89824 10.38552 11.35624 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.003946 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.651244 B = 7093.312004 C = 7629.029708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.036 4.036 4 C -0.120 4.120 5 C -0.229 4.229 6 C 0.542 3.458 7 O -0.544 6.544 8 N -0.604 5.604 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.132 4.132 12 C 0.169 3.831 13 H 0.064 0.936 14 N -0.593 5.593 15 C 0.163 3.837 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.002 3.998 19 N -0.909 5.909 20 Si 0.905 3.095 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.098 3.902 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.025 0.975 41 H -0.003 1.003 42 H 0.047 0.953 43 H 0.252 0.748 44 H 0.089 0.911 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 -20.174 -2.896 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.038 4.038 4 C -0.177 4.177 5 C -0.250 4.250 6 C 0.333 3.667 7 O -0.424 6.424 8 N -0.336 5.336 9 C -0.015 4.015 10 C -0.171 4.171 11 C -0.172 4.172 12 C 0.060 3.940 13 H 0.082 0.918 14 N -0.315 5.315 15 C 0.019 3.981 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.554 5.554 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.026 4.026 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.015 0.985 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.818 -19.711 -3.351 20.823 hybrid contribution -0.132 0.919 -0.069 0.931 sum -5.950 -18.792 -3.420 20.006 Atomic orbital electron populations 1.21731 0.94342 1.01875 1.02537 1.20750 0.96595 0.92788 1.03144 1.22521 0.91028 0.94650 0.95583 1.21080 1.02220 1.01151 0.93202 1.22523 1.06790 0.97050 0.98631 1.18519 0.79714 0.85147 0.83335 1.90752 1.52150 1.69312 1.30197 1.48072 1.54580 1.23971 1.07000 1.21770 0.97596 0.96720 0.85367 1.21936 0.98806 0.96246 1.00115 1.22111 0.99220 0.95731 1.00101 1.20581 0.93525 0.86395 0.93487 0.91810 1.43896 1.22445 1.04611 1.60525 1.20773 0.87189 0.94503 0.95677 1.19240 1.26838 0.83555 1.08632 0.91445 1.25003 1.00888 0.97688 0.96036 1.70072 1.43741 1.23997 1.17584 0.86257 0.77349 0.83202 0.79743 1.21480 1.21618 1.20491 1.22365 0.94701 0.82396 1.03148 0.92341 0.92319 0.92263 0.90466 0.90830 0.90369 0.92983 0.89413 0.85631 0.91732 0.90201 0.91394 0.91834 0.92512 0.91558 0.95633 0.98496 0.93387 0.93811 0.89250 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.10 -0.74 6.08 -27.88 -0.17 -0.91 16 3 C -0.04 -0.39 5.36 -101.17 -0.54 -0.94 16 4 C -0.12 -1.45 8.44 36.00 0.30 -1.15 16 5 C -0.23 -2.80 8.80 -37.80 -0.33 -3.13 16 6 C 0.54 8.82 7.47 -12.66 -0.09 8.72 16 7 O -0.54 -10.59 12.76 5.26 0.07 -10.52 16 8 N -0.60 -9.66 2.97 -174.16 -0.52 -10.17 16 9 C 0.11 1.35 6.31 -3.71 -0.02 1.33 16 10 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 11 C -0.13 -2.36 5.14 -26.69 -0.14 -2.50 16 12 C 0.17 3.56 2.74 -67.82 -0.19 3.37 16 13 H 0.06 1.43 7.87 -51.93 -0.41 1.02 16 14 N -0.59 -15.04 2.82 -173.35 -0.49 -15.53 16 15 C 0.16 4.04 8.03 59.85 0.48 4.52 16 16 C -0.25 -7.11 9.59 -15.06 -0.14 -7.25 16 17 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 18 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 19 N -0.91 -26.66 10.65 55.49 0.59 -26.07 16 20 Si 0.90 22.29 29.57 -169.99 -5.03 17.26 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.10 1.87 5.80 -3.71 -0.02 1.85 16 25 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.04 -51.93 -0.42 0.09 16 30 H 0.08 1.01 7.97 -51.93 -0.41 0.59 16 31 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.09 1.30 6.30 -51.93 -0.33 0.97 16 33 H 0.13 1.21 6.09 -52.49 -0.32 0.89 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.78 5.45 -51.93 -0.28 0.50 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.03 0.67 7.53 -51.93 -0.39 0.28 16 41 H 0.00 -0.07 6.35 -51.93 -0.33 -0.40 16 42 H 0.05 1.29 7.08 -51.92 -0.37 0.92 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.09 1.94 6.99 -51.93 -0.36 1.57 16 45 H 0.06 1.17 6.49 -51.93 -0.34 0.83 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -31.44 348.15 -8.58 -40.03 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.71 Total: -1.52 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.75 Total: 1.27 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.41 Total: -51.77 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.44 -8.58 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567191954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.867 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds