Wall clock time and date at job start Fri Apr 10 2020 17:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46738 * 2 1 4 4 C 1.50694 * 120.00431 * 274.99839 * 3 2 1 5 5 C 1.32998 * 119.99756 * 95.00303 * 3 2 1 6 6 C 1.47102 * 119.99665 * 171.77097 * 5 3 2 7 7 O 1.21615 * 120.00480 * 353.04145 * 6 5 3 8 8 N 1.34783 * 119.99768 * 173.04258 * 6 5 3 9 9 C 1.46922 * 120.63062 * 355.02775 * 8 6 5 10 10 C 1.53197 * 108.77322 * 233.60833 * 9 8 6 11 11 C 1.53039 * 109.31038 * 305.36392 * 10 9 8 12 12 C 1.53034 * 109.54181 * 61.36456 * 11 10 9 13 13 H 1.09000 * 109.49475 * 58.61792 * 12 11 10 14 14 N 1.46496 * 109.50165 * 178.68400 * 12 11 10 15 15 C 1.46499 * 119.99889 * 59.72406 * 14 12 11 16 16 C 1.36937 * 120.00143 * 240.00114 * 14 12 11 17 17 H 1.08001 * 120.00240 * 337.00147 * 16 14 12 18 18 C 1.38812 * 120.00417 * 156.99413 * 16 14 12 19 19 N 1.31621 * 119.99771 * 348.12400 * 18 16 14 20 20 Si 1.86795 * 120.00520 * 168.12027 * 18 16 14 21 21 H 1.48503 * 109.47147 * 90.00020 * 20 18 16 22 22 H 1.48501 * 109.47390 * 210.00469 * 20 18 16 23 23 H 1.48507 * 109.46956 * 330.00164 * 20 18 16 24 24 C 1.46930 * 120.63073 * 175.02047 * 8 6 5 25 25 H 1.09008 * 109.46835 * 299.99445 * 1 2 3 26 26 H 1.08997 * 109.47447 * 59.99569 * 1 2 3 27 27 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46815 * 240.00516 * 2 1 3 29 29 H 1.09000 * 109.47172 * 120.00003 * 2 1 3 30 30 H 1.08999 * 109.47470 * 263.75415 * 4 3 2 31 31 H 1.09006 * 109.46601 * 23.75002 * 4 3 2 32 32 H 1.09005 * 109.47500 * 143.74491 * 4 3 2 33 33 H 1.07995 * 120.00352 * 351.77395 * 5 3 2 34 34 H 1.08996 * 109.58885 * 113.81766 * 9 8 6 35 35 H 1.08997 * 109.58575 * 353.39352 * 9 8 6 36 36 H 1.08994 * 109.49658 * 185.41303 * 10 9 8 37 37 H 1.09000 * 109.49994 * 65.31228 * 10 9 8 38 38 H 1.09003 * 109.46142 * 301.34308 * 11 10 9 39 39 H 1.08998 * 109.45868 * 181.38762 * 11 10 9 40 40 H 1.09004 * 109.47090 * 268.22655 * 15 14 12 41 41 H 1.08995 * 109.47033 * 28.23002 * 15 14 12 42 42 H 1.09007 * 109.47126 * 148.22701 * 15 14 12 43 43 H 0.97003 * 119.99943 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.58262 * 6.61227 * 24 8 6 45 45 H 1.08993 * 109.58855 * 246.18075 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1762 2.1692 -1.3000 5 6 2.3486 2.0143 1.1474 6 6 3.0069 3.3297 1.1380 7 8 3.3761 3.8176 0.0870 8 7 3.2009 3.9945 2.2944 9 6 2.6650 3.4704 3.5581 10 6 1.8242 4.5621 4.2275 11 6 2.6688 5.8291 4.3803 12 6 3.0971 6.3285 2.9986 13 1 2.2126 6.5289 2.3939 14 7 3.8791 7.5587 3.1439 15 6 5.1200 7.5502 3.9225 16 6 3.4472 8.7180 2.5568 17 1 2.7768 8.6778 1.7110 18 6 3.8708 9.9450 3.0487 19 7 4.4906 10.0106 4.2080 20 14 3.5615 11.5028 2.0655 21 1 2.2495 12.0805 2.4532 22 1 4.6379 12.4868 2.3455 23 1 3.5512 11.1795 0.6161 24 6 3.9524 5.2569 2.3152 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2073 2.1002 -1.6468 31 1 1.5120 1.7326 -2.0460 32 1 1.9133 3.2160 -1.1478 33 1 2.1222 1.5304 2.0860 34 1 3.4878 3.1886 4.2150 35 1 2.0406 2.5999 3.3571 36 1 1.5000 4.2202 5.2103 37 1 0.9517 4.7787 3.6111 38 1 3.5538 5.6060 4.9761 39 1 2.0806 6.5997 4.8786 40 1 4.9018 7.8158 4.9569 41 1 5.5633 6.5550 3.8886 42 1 5.8183 8.2735 3.5012 43 1 4.7871 10.8680 4.5516 44 1 4.1772 5.5651 1.2941 45 1 4.8801 5.1207 2.8708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567191954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:20 Heat of formation + Delta-G solvation = -20.268519 kcal Electronic energy + Delta-G solvation = -22767.675722 eV Core-core repulsion = 19592.274177 eV Total energy + Delta-G solvation = -3175.401546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27618 -39.14434 -37.09559 -36.67814 -33.97527 -32.87406 -31.86878 -30.56813 -28.73727 -28.07134 -26.32655 -25.41658 -24.51942 -23.04795 -21.62591 -20.24469 -19.01258 -18.69316 -18.33098 -17.08721 -16.54753 -16.24303 -15.74001 -15.67061 -15.30670 -15.14897 -15.03116 -14.57316 -14.45826 -14.20858 -13.77709 -13.70142 -13.63167 -13.44347 -12.99613 -12.89471 -12.84037 -12.66832 -12.47927 -12.30829 -12.20324 -12.08979 -11.94602 -11.78647 -11.70399 -11.58303 -11.38899 -10.69054 -10.52720 -10.10657 -9.56046 -8.76119 -7.86519 -5.34379 0.43130 1.42504 1.44049 1.53924 2.06908 2.32490 2.49189 3.26745 3.58354 3.62076 3.88495 3.95394 4.03903 4.10315 4.22118 4.28872 4.36076 4.38245 4.47671 4.62657 4.65901 4.72809 4.76346 4.80492 4.84727 4.87980 4.90513 5.01468 5.06767 5.11804 5.14546 5.19891 5.26700 5.41420 5.43502 5.47889 5.52699 5.59279 5.61593 5.69216 5.70540 6.30358 6.56734 7.12142 7.26695 7.83572 8.26456 9.16557 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.003946 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.651244 B = 7093.312004 C = 7629.029708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.023 4.023 4 C -0.122 4.122 5 C -0.240 4.240 6 C 0.531 3.469 7 O -0.589 6.589 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.122 4.122 11 C -0.122 4.122 12 C 0.168 3.832 13 H 0.040 0.960 14 N -0.611 5.611 15 C 0.181 3.819 16 C -0.269 4.269 17 H 0.060 0.940 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.114 3.886 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.005 0.995 41 H 0.028 0.972 42 H 0.018 0.982 43 H 0.250 0.750 44 H 0.054 0.946 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 -23.269 -2.399 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.025 4.025 4 C -0.178 4.178 5 C -0.260 4.260 6 C 0.324 3.676 7 O -0.472 6.472 8 N -0.338 5.338 9 C -0.015 4.015 10 C -0.161 4.161 11 C -0.162 4.162 12 C 0.060 3.940 13 H 0.058 0.942 14 N -0.333 5.333 15 C 0.037 3.963 16 C -0.399 4.399 17 H 0.078 0.922 18 C -0.243 4.243 19 N -0.581 5.581 20 Si 0.796 3.204 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.202 1.202 24 C -0.011 4.011 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.178 0.822 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.024 0.976 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.153 -22.855 -2.838 24.116 hybrid contribution 0.248 1.831 -0.312 1.874 sum -6.905 -21.024 -3.150 22.352 Atomic orbital electron populations 1.21738 0.93500 1.02979 1.02208 1.20819 0.97091 0.90186 1.04687 1.22849 0.89182 0.96090 0.94358 1.21021 1.01981 0.99731 0.95045 1.22532 1.07845 0.94997 1.00634 1.19335 0.79275 0.86402 0.82544 1.90739 1.54044 1.70652 1.31809 1.48154 1.54329 1.22648 1.08682 1.22082 0.98545 0.97194 0.83683 1.21894 0.97805 0.94156 1.02254 1.21927 0.99720 0.97364 0.97174 1.20694 0.92503 0.85464 0.95303 0.94157 1.44094 1.23317 1.05362 1.60562 1.20485 0.86607 0.95230 0.94025 1.19473 1.26654 0.85042 1.08699 0.92246 1.25723 1.01096 1.00418 0.97059 1.70216 1.44678 1.24390 1.18775 0.85274 0.77241 0.79526 0.78402 1.20833 1.21451 1.20167 1.21843 0.94821 0.83752 1.00666 0.92476 0.92946 0.90455 0.89313 0.88980 0.91615 0.90491 0.92710 0.82162 0.89920 0.86375 0.87786 0.92310 0.92286 0.94076 0.97646 0.95381 0.96337 0.94111 0.92729 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 71.98 0.71 -0.76 16 2 C -0.09 -1.04 6.08 29.85 0.18 -0.86 16 3 C -0.02 -0.45 5.36 -17.62 -0.09 -0.54 16 4 C -0.12 -2.88 8.44 71.23 0.60 -2.28 16 5 C -0.24 -5.19 8.80 23.43 0.21 -4.98 16 6 C 0.53 16.98 7.47 86.57 0.65 17.63 16 7 O -0.59 -23.82 12.76 -4.08 -0.05 -23.87 16 8 N -0.61 -18.75 2.97 -823.17 -2.45 -21.19 16 9 C 0.11 2.26 6.31 86.36 0.54 2.80 16 10 C -0.12 -2.97 6.08 30.67 0.19 -2.78 16 11 C -0.12 -4.32 5.14 30.62 0.16 -4.17 16 12 C 0.17 7.26 2.74 45.07 0.12 7.38 16 13 H 0.04 1.89 7.87 -2.39 -0.02 1.87 16 14 N -0.61 -32.09 2.82 -702.36 -1.98 -34.07 16 15 C 0.18 9.23 8.03 127.77 1.03 10.25 16 16 C -0.27 -15.64 9.59 84.03 0.81 -14.83 16 17 H 0.06 3.47 7.82 -2.91 -0.02 3.44 16 18 C -0.05 -2.77 5.10 84.86 0.43 -2.34 16 19 N -0.93 -56.32 10.65 21.65 0.23 -56.08 16 20 Si 0.97 46.90 29.57 68.60 2.03 48.93 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 C 0.11 4.46 5.80 86.36 0.50 4.96 16 25 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.79 8.04 -2.39 -0.02 0.77 16 30 H 0.07 1.72 7.97 -2.39 -0.02 1.70 16 31 H 0.08 1.38 8.09 -2.38 -0.02 1.36 16 32 H 0.05 1.68 6.30 -2.38 -0.02 1.67 16 33 H 0.16 2.27 6.09 -2.91 -0.02 2.25 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 1.68 5.45 -2.39 -0.01 1.66 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 2.05 7.71 -2.39 -0.02 2.03 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.01 0.29 7.53 -2.38 -0.02 0.27 16 41 H 0.03 1.22 6.35 -2.39 -0.02 1.21 16 42 H 0.02 1.01 7.08 -2.38 -0.02 0.99 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.05 2.50 6.99 -2.39 -0.02 2.48 16 45 H 0.06 2.45 6.49 -2.39 -0.02 2.43 16 Total: -1.00 -72.78 348.15 4.76 -68.02 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.95 Total: 8.78 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.03 Total: 9.49 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.19 Total: -111.35 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -72.78 4.76 -68.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567191954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.751 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds