Wall clock time and date at job start Fri Apr 10 2020 17:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47270 * 2 1 4 4 C 1.50706 * 119.99753 * 264.96138 * 3 2 1 5 5 C 1.32994 * 120.00368 * 84.68941 * 3 2 1 6 6 C 1.47106 * 119.99775 * 352.41351 * 5 3 2 7 7 O 1.21615 * 120.00021 * 2.55964 * 6 5 3 8 8 N 1.34770 * 120.00127 * 182.55990 * 6 5 3 9 9 C 1.46932 * 120.63049 * 354.08109 * 8 6 5 10 10 C 1.53626 * 108.54291 * 126.36558 * 9 8 6 11 11 C 1.53049 * 109.23752 * 54.86039 * 10 9 8 12 12 C 1.53032 * 109.53765 * 298.50792 * 11 10 9 13 13 H 1.09010 * 109.52749 * 301.39988 * 12 11 10 14 14 N 1.46502 * 109.50059 * 181.31785 * 12 11 10 15 15 C 1.46491 * 119.99893 * 300.16540 * 14 12 11 16 16 C 1.36936 * 119.99876 * 120.16004 * 14 12 11 17 17 H 1.07994 * 120.00489 * 30.13918 * 16 14 12 18 18 C 1.38818 * 119.99558 * 210.14229 * 16 14 12 19 19 N 1.31617 * 120.00361 * 7.06151 * 18 16 14 20 20 Si 1.86805 * 119.99617 * 187.06178 * 18 16 14 21 21 H 1.48497 * 109.47074 * 59.99992 * 20 18 16 22 22 H 1.48498 * 109.46676 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47168 * 299.99783 * 20 18 16 24 24 C 1.46925 * 120.63199 * 174.36252 * 8 6 5 25 25 H 1.08998 * 109.47176 * 300.00546 * 1 2 3 26 26 H 1.09004 * 109.46725 * 60.00780 * 1 2 3 27 27 H 1.08999 * 109.46741 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47563 * 239.99199 * 2 1 3 29 29 H 1.09011 * 109.46794 * 119.99901 * 2 1 3 30 30 H 1.08993 * 109.46888 * 89.99780 * 4 3 2 31 31 H 1.09000 * 109.47086 * 210.00131 * 4 3 2 32 32 H 1.09000 * 109.47163 * 329.99902 * 4 3 2 33 33 H 1.07992 * 120.00190 * 172.42171 * 5 3 2 34 34 H 1.08995 * 109.58728 * 246.20472 * 9 8 6 35 35 H 1.08999 * 109.58592 * 6.62913 * 9 8 6 36 36 H 1.08994 * 109.63547 * 294.86707 * 10 9 8 37 37 H 1.09003 * 109.45875 * 174.73915 * 10 9 8 38 38 H 1.09003 * 109.45490 * 178.48893 * 11 10 9 39 39 H 1.09000 * 109.46054 * 58.53263 * 11 10 9 40 40 H 1.09008 * 109.47416 * 94.55411 * 15 14 12 41 41 H 1.09002 * 109.47398 * 214.55391 * 15 14 12 42 42 H 1.09001 * 109.47446 * 334.55861 * 15 14 12 43 43 H 0.96994 * 120.00093 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.58579 * 353.37123 * 24 8 6 45 45 H 1.09001 * 109.58651 * 113.79728 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3916 2.0929 -1.3001 5 6 2.1536 2.0833 1.1468 6 6 1.6430 1.4939 2.3942 7 8 1.1522 0.3813 2.3847 8 7 1.7192 2.1870 3.5475 9 6 2.4239 3.4752 3.6016 10 6 1.4728 4.5279 4.1911 11 6 0.9551 4.0377 5.5454 12 6 0.1732 2.7362 5.3538 13 1 -0.6555 2.9068 4.6663 14 7 -0.3486 2.2844 6.6460 15 6 0.5734 1.9877 7.7450 16 6 -1.6983 2.1395 6.8265 17 1 -2.3296 1.8750 5.9912 18 6 -2.2550 2.3326 8.0834 19 7 -1.5121 2.7891 9.0693 20 14 -4.0589 1.9447 8.3755 21 1 -4.3092 0.5093 8.0889 22 1 -4.4048 2.2352 9.7901 23 1 -4.8966 2.7817 7.4796 24 6 1.1046 1.6658 4.7761 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.5131 2.5961 -1.7038 31 1 3.1809 2.8240 -1.1252 32 1 2.7407 1.3446 -2.0117 33 1 2.6266 3.0540 1.1622 34 1 3.3072 3.3822 4.2333 35 1 2.7209 3.7717 2.5957 36 1 0.6324 4.6820 3.5145 37 1 2.0091 5.4673 4.3251 38 1 0.3008 4.7939 5.9793 39 1 1.7977 3.8601 6.2137 40 1 0.6765 2.8675 8.3803 41 1 0.1820 1.1582 8.3339 42 1 1.5479 1.7169 7.3387 43 1 -1.9010 2.9236 9.9476 44 1 0.5310 0.7682 4.5453 45 1 1.8826 1.4283 5.5016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567191955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:23 Heat of formation + Delta-G solvation = -15.976478 kcal Electronic energy + Delta-G solvation = -23012.643007 eV Core-core repulsion = 19837.427578 eV Total energy + Delta-G solvation = -3175.215429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29584 -39.19415 -37.00603 -36.46842 -33.98714 -32.85247 -31.82043 -30.66152 -28.81141 -28.04487 -26.19271 -25.34281 -24.46177 -23.04313 -21.74677 -20.22716 -19.03223 -18.69711 -18.33280 -17.08216 -16.55604 -16.15047 -15.86274 -15.67905 -15.29152 -15.03722 -14.85662 -14.47183 -14.42934 -14.00512 -13.90486 -13.78588 -13.59259 -13.42536 -13.08828 -12.84847 -12.79861 -12.77549 -12.55318 -12.32565 -12.14282 -11.97039 -11.91972 -11.86163 -11.72524 -11.47024 -11.36270 -10.69422 -10.34889 -10.06439 -9.51580 -8.67589 -7.85134 -5.42293 0.46834 1.42877 1.45230 1.51925 2.08441 2.37547 2.48876 3.26956 3.62012 3.68040 3.83058 3.99557 4.06671 4.10492 4.23332 4.28617 4.37754 4.47884 4.55659 4.62639 4.70834 4.71897 4.75231 4.77934 4.88193 4.89094 4.92157 4.99473 5.05904 5.12475 5.16929 5.24079 5.30406 5.39205 5.44638 5.49821 5.53942 5.59896 5.63821 5.70395 5.77120 6.34146 6.60513 7.13419 7.31976 7.82716 8.29201 9.15665 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.004378 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.165202 B = 6393.556727 C = 7116.537890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.024 4.024 4 C -0.121 4.121 5 C -0.243 4.243 6 C 0.530 3.470 7 O -0.578 6.578 8 N -0.607 5.607 9 C 0.106 3.894 10 C -0.122 4.122 11 C -0.122 4.122 12 C 0.169 3.831 13 H 0.041 0.959 14 N -0.609 5.609 15 C 0.178 3.822 16 C -0.274 4.274 17 H 0.056 0.944 18 C -0.040 4.040 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.117 3.883 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.008 0.992 42 H 0.029 0.971 43 H 0.250 0.750 44 H 0.054 0.946 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 3.092 -19.757 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C -0.026 4.026 4 C -0.177 4.177 5 C -0.263 4.263 6 C 0.323 3.677 7 O -0.461 6.461 8 N -0.339 5.339 9 C -0.016 4.016 10 C -0.161 4.161 11 C -0.161 4.161 12 C 0.061 3.939 13 H 0.060 0.940 14 N -0.332 5.332 15 C 0.033 3.967 16 C -0.404 4.404 17 H 0.074 0.926 18 C -0.236 4.236 19 N -0.576 5.576 20 Si 0.794 3.206 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.008 4.008 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.177 0.823 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.512 2.556 -19.550 22.831 hybrid contribution -1.332 -0.383 1.195 1.830 sum 10.180 2.172 -18.354 21.101 Atomic orbital electron populations 1.21502 0.95031 1.01367 1.00725 1.20931 0.96492 0.93812 1.02821 1.22896 0.89157 0.94797 0.95727 1.21062 1.03078 1.01114 0.92455 1.22551 1.09470 1.03491 0.90826 1.19305 0.78895 0.84716 0.84767 1.90710 1.47874 1.20990 1.86535 1.48156 1.54584 1.22621 1.08558 1.22175 0.94409 0.81038 1.03933 1.21968 0.99619 0.99173 0.95313 1.21920 0.99193 0.97049 0.97950 1.20711 0.94060 0.92438 0.86688 0.94021 1.44001 1.02639 1.77355 1.09202 1.20509 0.89749 0.97277 0.89145 1.19364 0.84555 1.41267 0.95219 0.92601 1.25895 1.01618 0.99238 0.96885 1.70156 1.36349 1.49349 1.01790 0.85364 0.80404 0.78092 0.76693 1.20674 1.21378 1.20086 1.21818 0.96151 0.97428 0.85442 0.94821 0.91921 0.93102 0.90102 0.91010 0.89278 0.89360 0.89940 0.82341 0.90241 0.86269 0.92049 0.88014 0.94175 0.92515 0.97016 0.97305 0.95230 0.94035 0.92740 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.34 71.98 0.67 -2.61 16 2 C -0.10 -2.40 5.35 29.85 0.16 -2.24 16 3 C -0.02 -0.45 5.36 -17.62 -0.09 -0.55 16 4 C -0.12 -1.26 10.04 71.24 0.72 -0.54 16 5 C -0.24 -5.22 8.96 23.43 0.21 -5.01 16 6 C 0.53 16.61 7.40 86.57 0.64 17.25 16 7 O -0.58 -22.38 10.65 -4.08 -0.04 -22.43 16 8 N -0.61 -18.68 2.97 -822.33 -2.44 -21.12 16 9 C 0.11 2.27 6.38 86.51 0.55 2.82 16 10 C -0.12 -2.96 6.10 30.82 0.19 -2.77 16 11 C -0.12 -4.33 5.14 30.62 0.16 -4.17 16 12 C 0.17 7.26 2.74 45.07 0.12 7.39 16 13 H 0.04 1.94 7.89 -2.38 -0.02 1.92 16 14 N -0.61 -31.98 2.79 -702.34 -1.96 -33.94 16 15 C 0.18 9.06 8.05 127.77 1.03 10.09 16 16 C -0.27 -15.88 9.51 84.03 0.80 -15.08 16 17 H 0.06 3.25 7.84 -2.91 -0.02 3.23 16 18 C -0.04 -2.32 5.21 84.86 0.44 -1.88 16 19 N -0.93 -55.97 10.85 21.65 0.23 -55.74 16 20 Si 0.97 46.50 29.56 68.60 2.03 48.53 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 C 0.12 4.54 5.77 86.36 0.50 5.04 16 25 H 0.03 1.08 6.36 -2.39 -0.02 1.07 16 26 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.43 7.98 -2.39 -0.02 1.41 16 29 H 0.07 2.15 5.88 -2.38 -0.01 2.14 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.63 8.06 -2.39 -0.02 0.61 16 32 H 0.08 0.68 8.00 -2.39 -0.02 0.66 16 33 H 0.16 2.25 5.84 -2.91 -0.02 2.23 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.12 1.69 5.30 -2.39 -0.01 1.68 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 2.00 7.71 -2.39 -0.02 1.98 16 40 H 0.01 0.64 7.25 -2.38 -0.02 0.62 16 41 H 0.01 0.46 7.62 -2.39 -0.02 0.44 16 42 H 0.03 1.29 6.36 -2.39 -0.02 1.27 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.05 2.47 7.04 -2.39 -0.02 2.46 16 45 H 0.06 2.32 6.50 -2.39 -0.02 2.30 16 Total: -1.00 -71.82 344.42 4.86 -66.96 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.95 Total: 10.00 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.09 Total: 7.73 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.17 Total: -110.79 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.04 Total: -22.43 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -71.82 4.86 -66.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567191955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.980 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds