Wall clock time and date at job start Fri Apr 10 2020 17:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99767 * 2 1 4 4 C 1.53001 * 109.47295 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.46610 * 239.99769 * 3 2 1 6 6 C 1.52996 * 109.47320 * 119.99841 * 3 2 1 7 7 C 1.50701 * 109.47235 * 179.97438 * 6 3 2 8 8 O 1.21278 * 119.99630 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99740 * 180.27284 * 7 6 3 10 10 C 1.46495 * 119.99572 * 179.72499 * 9 7 6 11 11 C 1.52999 * 109.47403 * 185.11742 * 10 9 7 12 12 H 1.09008 * 109.87259 * 305.51853 * 11 10 9 13 13 C 1.54321 * 109.88123 * 66.52881 * 11 10 9 14 14 C 1.55404 * 102.82751 * 141.52553 * 13 11 10 15 15 C 1.54916 * 101.66397 * 324.65993 * 14 13 11 16 16 N 1.47017 * 109.88801 * 184.50519 * 11 10 9 17 17 C 1.36933 * 125.65457 * 61.59946 * 16 11 10 18 18 H 1.08006 * 119.99638 * 14.82023 * 17 16 11 19 19 C 1.38810 * 120.00322 * 194.81689 * 17 16 11 20 20 N 1.31611 * 120.00094 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47063 * 59.99912 * 21 19 17 23 23 H 1.48497 * 109.47227 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46880 * 300.00116 * 21 19 17 25 25 H 1.08007 * 120.00011 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00438 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99888 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.46908 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46814 * 300.00667 * 4 3 2 30 30 H 1.08997 * 109.46733 * 60.00246 * 4 3 2 31 31 H 1.09001 * 109.47675 * 300.00099 * 5 3 2 32 32 H 1.09000 * 109.47615 * 60.00169 * 5 3 2 33 33 H 1.09006 * 109.47147 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47286 * 59.99533 * 6 3 2 35 35 H 1.08997 * 109.47150 * 300.00024 * 6 3 2 36 36 H 0.96995 * 120.00256 * 359.72804 * 9 7 6 37 37 H 1.09001 * 109.47687 * 305.11869 * 10 9 7 38 38 H 1.08998 * 109.47301 * 65.11781 * 10 9 7 39 39 H 1.09006 * 110.72142 * 259.97567 * 13 11 10 40 40 H 1.08995 * 110.72369 * 23.25408 * 13 11 10 41 41 H 1.09003 * 111.03845 * 206.53476 * 14 13 11 42 42 H 1.08999 * 110.92753 * 82.74460 * 14 13 11 43 43 H 1.08998 * 110.36901 * 278.08954 * 15 14 13 44 44 H 1.08998 * 110.46005 * 155.80786 * 15 14 13 45 45 H 0.97002 * 120.00012 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9430 1.3861 -1.2492 6 6 2.9430 1.3863 1.2492 7 6 3.6970 2.6912 1.2489 8 8 3.5452 3.4788 0.3393 9 7 4.5435 2.9805 2.2569 10 6 5.2809 4.2463 2.2535 11 6 6.2583 4.2705 3.4304 12 1 5.7232 4.0778 4.3604 13 6 7.3540 3.2034 3.2246 14 6 8.6313 3.9143 3.7521 15 6 8.3754 5.3797 3.3195 16 7 6.9257 5.5786 3.4994 17 6 6.3039 6.7825 3.6972 18 1 5.2846 6.8117 4.0530 19 6 6.9836 7.9652 3.4403 20 7 8.2256 7.9296 3.0063 21 14 6.1355 9.6075 3.7108 22 1 5.7319 9.7276 5.1348 23 1 7.0691 10.7095 3.3657 24 1 4.9310 9.6909 2.8462 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.6142 3.4120 -0.0011 29 1 0.4428 2.4100 -0.8908 30 1 0.4423 2.4105 0.8891 31 1 3.6514 0.5576 -1.2493 32 1 2.3165 1.3283 -2.1393 33 1 3.4884 2.3299 -1.2491 34 1 3.6514 0.5578 1.2493 35 1 2.3164 1.3286 2.1392 36 1 4.6645 2.3507 2.9845 37 1 5.8346 4.3419 1.3194 38 1 4.5797 5.0756 2.3465 39 1 7.1372 2.3101 3.8104 40 1 7.4588 2.9570 2.1680 41 1 9.5263 3.5164 3.2738 42 1 8.7018 3.8338 4.8368 43 1 8.6508 5.5203 2.2743 44 1 8.9343 6.0674 3.9542 45 1 8.7004 8.7561 2.8265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567368539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:30 Heat of formation + Delta-G solvation = -2.860169 kcal Electronic energy + Delta-G solvation = -22532.346026 eV Core-core repulsion = 19357.699364 eV Total energy + Delta-G solvation = -3174.646663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03101 -37.92790 -36.90734 -34.20372 -32.48564 -31.39944 -29.82599 -29.07216 -27.52314 -27.23759 -24.83068 -23.81455 -22.35983 -20.43132 -20.03528 -19.42552 -18.23901 -17.10347 -16.50275 -15.89313 -15.41162 -15.30965 -14.78277 -14.45894 -14.24014 -13.83431 -13.73022 -13.48813 -13.00617 -12.66695 -12.11682 -12.04973 -11.90241 -11.82489 -11.72861 -11.36112 -11.18102 -11.11302 -10.94589 -10.92193 -10.77540 -10.67403 -10.22386 -10.12946 -9.93460 -9.83781 -9.72390 -9.52005 -9.22798 -8.63102 -8.53805 -6.84309 -5.77397 -3.14097 2.13746 2.91229 3.39770 3.45153 3.45598 3.54060 4.48016 4.65348 4.70670 4.88410 5.14633 5.16315 5.30980 5.34945 5.40475 5.49825 5.51841 5.58802 5.62419 5.68400 5.80637 5.80760 6.00242 6.01284 6.06324 6.10212 6.15146 6.23814 6.40066 6.45434 6.47720 6.51474 6.55837 6.64507 6.69449 6.77498 6.86278 7.07662 7.50492 7.60252 7.78098 7.84334 8.25193 8.56787 9.16793 9.77481 10.45013 11.34635 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.003872 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.261603 B = 7229.051581 C = 8073.076653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.019 4.019 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.129 4.129 7 C 0.507 3.493 8 O -0.535 6.535 9 N -0.725 5.725 10 C 0.109 3.891 11 C 0.152 3.848 12 H 0.036 0.964 13 C -0.125 4.125 14 C -0.149 4.149 15 C 0.172 3.828 16 N -0.589 5.589 17 C -0.235 4.235 18 H 0.075 0.925 19 C 0.000 4.000 20 N -0.916 5.916 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.394 0.606 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 -16.676 -2.374 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.161 4.161 3 C -0.020 4.020 4 C -0.213 4.213 5 C -0.207 4.207 6 C -0.169 4.169 7 C 0.293 3.707 8 O -0.413 6.413 9 N -0.375 5.375 10 C -0.016 4.016 11 C 0.043 3.957 12 H 0.054 0.946 13 C -0.163 4.163 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.313 5.313 17 C -0.363 4.363 18 H 0.093 0.907 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.209 1.209 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.227 0.773 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.999 -15.817 -3.036 18.449 hybrid contribution -0.419 0.436 0.430 0.742 sum -9.418 -15.381 -2.606 18.222 Atomic orbital electron populations 1.24005 0.96212 1.01972 1.01477 1.22983 0.95929 0.97685 0.99471 1.19358 0.94944 0.93046 0.94627 1.22186 0.98510 0.99971 1.00632 1.22061 0.99171 1.03752 0.95678 1.21711 0.99206 0.96180 0.99838 1.20564 0.79685 0.88343 0.82080 1.90578 1.64563 1.50667 1.35458 1.46203 1.44263 1.22241 1.24843 1.22203 0.94678 0.83859 1.00856 1.21124 0.92195 0.88050 0.94313 0.94638 1.22641 0.96402 0.96854 1.00449 1.23049 0.96132 0.99622 0.99930 1.21452 0.84850 0.90099 0.98851 1.44472 1.02117 1.00626 1.84110 1.18928 0.97599 0.81964 1.37847 0.90744 1.24913 0.96700 0.97948 1.00219 1.69922 1.09918 1.26291 1.50018 0.86230 0.78549 0.83261 0.77916 1.21059 1.21541 1.20939 0.88889 0.87802 0.87625 0.89253 0.92986 0.93340 0.93519 0.93175 0.89202 0.89141 0.89172 0.77254 0.91734 0.91593 0.92417 0.91868 0.92366 0.92341 0.95619 0.90996 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 13.70 29.01 0.40 -1.34 16 2 C -0.14 -1.32 8.76 -36.02 -0.32 -1.64 16 3 C -0.02 -0.21 0.74 -155.66 -0.11 -0.33 16 4 C -0.16 -1.88 6.83 37.16 0.25 -1.63 16 5 C -0.15 -1.79 8.16 37.16 0.30 -1.49 16 6 C -0.13 -1.36 4.75 -27.88 -0.13 -1.50 16 7 C 0.51 7.38 7.24 -10.98 -0.08 7.30 16 8 O -0.53 -9.73 11.34 5.56 0.06 -9.66 16 9 N -0.72 -10.43 5.36 -60.30 -0.32 -10.75 16 10 C 0.11 2.07 5.10 -4.05 -0.02 2.05 16 11 C 0.15 2.95 3.19 -66.96 -0.21 2.74 16 12 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 13 C -0.13 -2.06 6.22 -24.76 -0.15 -2.21 16 14 C -0.15 -2.70 7.09 -24.44 -0.17 -2.87 16 15 C 0.17 4.09 5.42 -2.52 -0.01 4.08 16 16 N -0.59 -14.55 3.13 -162.57 -0.51 -15.06 16 17 C -0.24 -6.43 9.72 -15.06 -0.15 -6.57 16 18 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 19 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 20 N -0.92 -26.63 10.58 55.49 0.59 -26.04 16 21 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H 0.09 0.68 8.06 -52.48 -0.42 0.25 16 26 H 0.10 0.92 5.69 -52.49 -0.30 0.62 16 27 H 0.11 0.85 8.06 -52.48 -0.42 0.43 16 28 H 0.09 1.34 5.51 -51.93 -0.29 1.05 16 29 H 0.05 0.58 7.50 -51.93 -0.39 0.19 16 30 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.33 5.51 -51.93 -0.29 1.04 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.39 4.47 8.39 -40.82 -0.34 4.12 16 37 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 38 H 0.07 1.44 7.86 -51.93 -0.41 1.03 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 44 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -30.54 349.80 -8.21 -38.75 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.77 Total: 3.97 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.50 Total: -3.52 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.24 Total: -51.85 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.06 Total: -9.66 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.54 -8.21 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567368539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.893 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds