Wall clock time and date at job start Fri Apr 10 2020 17:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50692 * 120.00234 * 2 1 4 4 C 1.53001 * 109.47048 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47265 * 240.00432 * 3 2 1 6 6 C 1.52994 * 109.47474 * 120.00191 * 3 2 1 7 7 C 1.50705 * 109.47601 * 180.02562 * 6 3 2 8 8 O 1.21276 * 119.99487 * 0.02562 * 7 6 3 9 9 N 1.34766 * 120.00041 * 179.97438 * 7 6 3 10 10 C 1.46507 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47024 * 186.55633 * 10 9 7 12 12 H 1.08998 * 110.00457 * 298.00512 * 11 10 9 13 13 C 1.54337 * 109.98758 * 176.96696 * 11 10 9 14 14 C 1.55160 * 103.01893 * 218.66760 * 13 11 10 15 15 C 1.54905 * 101.58194 * 35.30988 * 14 13 11 16 16 N 1.47019 * 109.88107 * 59.10573 * 11 10 9 17 17 C 1.36939 * 125.64650 * 298.38836 * 16 11 10 18 18 H 1.07995 * 120.00311 * 326.61379 * 17 16 11 19 19 C 1.38817 * 119.99958 * 146.61829 * 17 16 11 20 20 N 1.31621 * 119.99926 * 183.80020 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 3.79389 * 19 17 16 22 22 H 1.48498 * 109.47056 * 185.51895 * 21 19 17 23 23 H 1.48507 * 109.47213 * 65.51506 * 21 19 17 24 24 H 1.48500 * 109.47281 * 305.51810 * 21 19 17 25 25 H 1.08005 * 119.99895 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99719 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99719 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47084 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47541 * 299.99700 * 4 3 2 30 30 H 1.08995 * 109.47645 * 60.00024 * 4 3 2 31 31 H 1.09002 * 109.46756 * 299.99770 * 5 3 2 32 32 H 1.08999 * 109.47316 * 59.99580 * 5 3 2 33 33 H 1.09005 * 109.47290 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47119 * 59.99879 * 6 3 2 35 35 H 1.09007 * 109.47051 * 299.99845 * 6 3 2 36 36 H 0.97000 * 120.00147 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.46620 * 66.55848 * 10 9 7 38 38 H 1.09000 * 109.46875 * 306.56162 * 10 9 7 39 39 H 1.08996 * 110.84924 * 100.20179 * 13 11 10 40 40 H 1.08998 * 110.67107 * 337.05141 * 13 11 10 41 41 H 1.09000 * 111.00138 * 277.23020 * 14 13 11 42 42 H 1.09006 * 111.00118 * 153.38576 * 14 13 11 43 43 H 1.09005 * 110.36345 * 204.15031 * 15 14 13 44 44 H 1.09000 * 110.36832 * 81.83015 * 15 14 13 45 45 H 0.97000 * 119.99963 * 5.04891 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0694 2.4680 0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9432 1.3861 1.2491 7 6 3.6964 2.6915 1.2495 8 8 3.5441 3.4795 0.3403 9 7 4.5382 2.9834 2.2605 10 6 5.2708 4.2522 2.2606 11 6 6.2693 4.2645 3.4197 12 1 5.7393 4.1904 4.3693 13 6 7.1010 5.5642 3.3858 14 6 8.5191 5.0824 3.7911 15 6 8.5720 3.6818 3.1315 16 7 7.2085 3.1418 3.2824 17 6 6.8719 1.8144 3.2880 18 1 6.0469 1.4691 3.8932 19 6 7.5913 0.9127 2.5157 20 7 7.2219 -0.3495 2.4625 21 14 9.0833 1.4907 1.5519 22 1 9.5910 0.3771 0.7108 23 1 10.1456 1.9224 2.4957 24 1 8.6996 2.6322 0.6830 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.6144 3.4119 0.0002 29 1 0.4423 2.4105 -0.8891 30 1 0.4430 2.4101 0.8908 31 1 3.6514 0.5576 -1.2493 32 1 2.3165 1.3283 -2.1393 33 1 3.4879 2.3303 -1.2495 34 1 3.6515 0.5575 1.2491 35 1 2.3166 1.3284 2.1392 36 1 4.6597 2.3532 2.9879 37 1 4.5682 5.0773 2.3775 38 1 5.8068 4.3622 1.3179 39 1 6.7192 6.2879 4.1058 40 1 7.1102 5.9890 2.3821 41 1 8.6115 5.0078 4.8746 42 1 9.2868 5.7375 3.3793 43 1 9.2912 3.0461 3.6482 44 1 8.8309 3.7689 2.0763 45 1 6.4062 -0.6351 2.9029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567368540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:34 Heat of formation + Delta-G solvation = -1.256384 kcal Electronic energy + Delta-G solvation = -23381.761081 eV Core-core repulsion = 20207.183963 eV Total energy + Delta-G solvation = -3174.577117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.70586 -38.15631 -36.69838 -33.82150 -32.82967 -31.10780 -29.90070 -29.68318 -27.52493 -26.99009 -24.74100 -23.42775 -22.11989 -21.12040 -19.75038 -19.20199 -17.98828 -17.57243 -16.42429 -15.85862 -15.33730 -15.09778 -14.87689 -14.76816 -14.06933 -13.66640 -13.49337 -13.33215 -13.15887 -12.69111 -12.49273 -12.28860 -11.78837 -11.76110 -11.45097 -11.39711 -11.13815 -11.03192 -10.88759 -10.82512 -10.63409 -10.59385 -10.50334 -10.37538 -9.89484 -9.41395 -9.25699 -9.24872 -8.90853 -8.70631 -8.19667 -7.07658 -6.32947 -3.51275 2.40251 3.28125 3.36978 3.45899 3.63743 3.94967 4.51642 4.92208 4.98101 5.03883 5.16995 5.20480 5.29477 5.44526 5.47579 5.48180 5.54469 5.67645 5.84011 5.84453 5.90029 5.93156 6.02824 6.07161 6.09903 6.13142 6.23064 6.25297 6.30980 6.35086 6.37226 6.41259 6.59210 6.67575 6.69918 6.73905 6.81172 6.86139 6.96983 7.27901 7.77646 8.23614 8.31269 8.88609 8.95640 9.42483 10.20318 11.04020 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.005657 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.039357 B = 4948.504588 C = 5796.240090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.018 4.018 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.129 4.129 7 C 0.513 3.487 8 O -0.558 6.558 9 N -0.699 5.699 10 C 0.118 3.882 11 C 0.145 3.855 12 H 0.041 0.959 13 C -0.124 4.124 14 C -0.130 4.130 15 C 0.094 3.906 16 N -0.604 5.604 17 C -0.324 4.324 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 1.073 2.927 22 H -0.301 1.301 23 H -0.289 1.289 24 H -0.289 1.289 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.409 0.591 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 6.387 -0.656 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.154 4.154 3 C -0.019 4.019 4 C -0.209 4.209 5 C -0.205 4.205 6 C -0.169 4.169 7 C 0.300 3.700 8 O -0.439 6.439 9 N -0.350 5.350 10 C -0.008 4.008 11 C 0.038 3.962 12 H 0.059 0.941 13 C -0.162 4.162 14 C -0.168 4.168 15 C -0.031 4.031 16 N -0.330 5.330 17 C -0.452 4.452 18 H 0.084 0.916 19 C -0.207 4.207 20 N -0.557 5.557 21 Si 0.906 3.094 22 H -0.229 1.229 23 H -0.217 1.217 24 H -0.217 1.217 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.172 6.302 -2.215 9.095 hybrid contribution -1.167 -0.001 1.378 1.806 sum -7.339 6.300 -0.837 9.708 Atomic orbital electron populations 1.23935 0.96132 1.01693 1.02631 1.23052 0.95898 0.98034 0.98389 1.19342 0.94808 0.92757 0.94949 1.22162 0.98386 1.00115 1.00253 1.22039 0.99124 1.04058 0.95302 1.21658 0.99183 0.96971 0.99046 1.20463 0.79683 0.88043 0.81833 1.90480 1.66352 1.51109 1.35971 1.46102 1.42336 1.21256 1.25337 1.21824 0.93632 0.84905 1.00454 1.21302 0.91135 0.88582 0.95189 0.94083 1.22519 0.95943 0.96507 1.01256 1.22705 0.96225 0.97382 1.00522 1.22300 0.89712 0.93417 0.97633 1.44734 0.99664 1.01508 1.87134 1.19767 1.19783 0.81418 1.24247 0.91577 1.26122 1.03809 0.94397 0.96330 1.70943 1.25120 1.15600 1.44001 0.83742 0.75739 0.73695 0.76239 1.22895 1.21673 1.21673 0.89008 0.88011 0.87474 0.89401 0.93258 0.93602 0.93195 0.93524 0.89306 0.88477 0.89721 0.75237 0.93451 0.92119 0.91556 0.91406 0.91508 0.91750 0.92129 0.95163 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.44 13.70 29.01 0.40 -2.05 16 2 C -0.14 -1.81 8.76 -36.03 -0.32 -2.13 16 3 C -0.02 -0.27 0.74 -155.67 -0.11 -0.39 16 4 C -0.15 -2.18 6.83 37.16 0.25 -1.93 16 5 C -0.15 -2.40 8.16 37.16 0.30 -2.10 16 6 C -0.13 -2.10 4.75 -27.88 -0.13 -2.23 16 7 C 0.51 9.74 7.24 -10.99 -0.08 9.66 16 8 O -0.56 -11.47 11.33 5.56 0.06 -11.41 16 9 N -0.70 -13.55 4.79 -60.29 -0.29 -13.84 16 10 C 0.12 2.22 5.23 -4.04 -0.02 2.20 16 11 C 0.15 2.70 3.38 -66.95 -0.23 2.47 16 12 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.12 -1.89 6.48 -24.89 -0.16 -2.05 16 14 C -0.13 -2.06 7.09 -24.58 -0.17 -2.24 16 15 C 0.09 1.93 4.63 -2.53 -0.01 1.92 16 16 N -0.60 -13.49 2.91 -162.57 -0.47 -13.96 16 17 C -0.32 -8.26 8.37 -15.06 -0.13 -8.38 16 18 H 0.07 1.75 7.02 -52.49 -0.37 1.38 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.71 13.70 55.49 0.76 -25.94 16 21 Si 1.07 26.18 24.69 -169.99 -4.20 21.98 16 22 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.29 -6.54 5.97 56.52 0.34 -6.20 16 24 H -0.29 -6.95 6.40 56.52 0.36 -6.59 16 25 H 0.09 0.94 8.06 -52.48 -0.42 0.52 16 26 H 0.10 1.15 5.69 -52.49 -0.30 0.86 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.09 1.46 5.51 -51.93 -0.29 1.17 16 29 H 0.05 0.64 7.50 -51.93 -0.39 0.26 16 30 H 0.04 0.60 7.50 -51.93 -0.39 0.21 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.65 5.52 -51.93 -0.29 1.36 16 34 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.41 8.14 5.92 -40.82 -0.24 7.90 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.28 8.09 -51.93 -0.42 0.86 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.31 6.26 -51.93 -0.33 0.98 16 44 H 0.03 0.66 5.13 -51.93 -0.27 0.39 16 45 H 0.26 7.45 8.73 -40.82 -0.36 7.10 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -28.91 337.84 -7.13 -36.04 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.59 Total: 9.48 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.50 Total: -7.44 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.00 Total: -53.74 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.06 Total: -11.41 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.20 Total: 21.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.91 -7.13 -36.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567368540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.785 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds