Wall clock time and date at job start Fri Apr 10 2020 17:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50692 * 120.00234 * 2 1 4 4 C 1.53001 * 109.47048 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47265 * 240.00432 * 3 2 1 6 6 C 1.52994 * 109.47474 * 120.00191 * 3 2 1 7 7 C 1.50705 * 109.47601 * 180.02562 * 6 3 2 8 8 O 1.21276 * 119.99487 * 0.02562 * 7 6 3 9 9 N 1.34766 * 120.00041 * 179.97438 * 7 6 3 10 10 C 1.46507 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47024 * 186.55633 * 10 9 7 12 12 H 1.08998 * 110.00457 * 298.00512 * 11 10 9 13 13 C 1.54337 * 109.98758 * 176.96696 * 11 10 9 14 14 C 1.55160 * 103.01893 * 218.66760 * 13 11 10 15 15 C 1.54905 * 101.58194 * 35.30988 * 14 13 11 16 16 N 1.47019 * 109.88107 * 59.10573 * 11 10 9 17 17 C 1.36939 * 125.64650 * 298.38836 * 16 11 10 18 18 H 1.07995 * 120.00311 * 326.61379 * 17 16 11 19 19 C 1.38817 * 119.99958 * 146.61829 * 17 16 11 20 20 N 1.31621 * 119.99926 * 183.80020 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 3.79389 * 19 17 16 22 22 H 1.48498 * 109.47056 * 185.51895 * 21 19 17 23 23 H 1.48507 * 109.47213 * 65.51506 * 21 19 17 24 24 H 1.48500 * 109.47281 * 305.51810 * 21 19 17 25 25 H 1.08005 * 119.99895 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99719 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99719 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47084 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47541 * 299.99700 * 4 3 2 30 30 H 1.08995 * 109.47645 * 60.00024 * 4 3 2 31 31 H 1.09002 * 109.46756 * 299.99770 * 5 3 2 32 32 H 1.08999 * 109.47316 * 59.99580 * 5 3 2 33 33 H 1.09005 * 109.47290 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47119 * 59.99879 * 6 3 2 35 35 H 1.09007 * 109.47051 * 299.99845 * 6 3 2 36 36 H 0.97000 * 120.00147 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.46620 * 66.55848 * 10 9 7 38 38 H 1.09000 * 109.46875 * 306.56162 * 10 9 7 39 39 H 1.08996 * 110.84924 * 100.20179 * 13 11 10 40 40 H 1.08998 * 110.67107 * 337.05141 * 13 11 10 41 41 H 1.09000 * 111.00138 * 277.23020 * 14 13 11 42 42 H 1.09006 * 111.00118 * 153.38576 * 14 13 11 43 43 H 1.09005 * 110.36345 * 204.15031 * 15 14 13 44 44 H 1.09000 * 110.36832 * 81.83015 * 15 14 13 45 45 H 0.97000 * 119.99963 * 5.04891 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0694 2.4680 0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9432 1.3861 1.2491 7 6 3.6964 2.6915 1.2495 8 8 3.5441 3.4795 0.3403 9 7 4.5382 2.9834 2.2605 10 6 5.2708 4.2522 2.2606 11 6 6.2693 4.2645 3.4197 12 1 5.7393 4.1904 4.3693 13 6 7.1010 5.5642 3.3858 14 6 8.5191 5.0824 3.7911 15 6 8.5720 3.6818 3.1315 16 7 7.2085 3.1418 3.2824 17 6 6.8719 1.8144 3.2880 18 1 6.0469 1.4691 3.8932 19 6 7.5913 0.9127 2.5157 20 7 7.2219 -0.3495 2.4625 21 14 9.0833 1.4907 1.5519 22 1 9.5910 0.3771 0.7108 23 1 10.1456 1.9224 2.4957 24 1 8.6996 2.6322 0.6830 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.6144 3.4119 0.0002 29 1 0.4423 2.4105 -0.8891 30 1 0.4430 2.4101 0.8908 31 1 3.6514 0.5576 -1.2493 32 1 2.3165 1.3283 -2.1393 33 1 3.4879 2.3303 -1.2495 34 1 3.6515 0.5575 1.2491 35 1 2.3166 1.3284 2.1392 36 1 4.6597 2.3532 2.9879 37 1 4.5682 5.0773 2.3775 38 1 5.8068 4.3622 1.3179 39 1 6.7192 6.2879 4.1058 40 1 7.1102 5.9890 2.3821 41 1 8.6115 5.0078 4.8746 42 1 9.2868 5.7375 3.3793 43 1 9.2912 3.0461 3.6482 44 1 8.8309 3.7689 2.0763 45 1 6.4062 -0.6351 2.9029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567368540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:33 Heat of formation + Delta-G solvation = -18.969817 kcal Electronic energy + Delta-G solvation = -23382.529193 eV Core-core repulsion = 20207.183963 eV Total energy + Delta-G solvation = -3175.345230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16652 -39.65978 -38.00179 -35.36262 -34.77646 -32.26881 -31.64225 -31.11204 -28.89238 -28.19807 -26.32762 -25.17622 -23.37416 -22.53205 -21.33689 -20.70753 -19.55115 -19.07316 -17.86560 -17.34828 -16.85284 -16.66883 -16.28445 -16.13490 -15.40623 -15.36616 -15.05893 -14.96412 -14.57591 -14.13982 -13.94252 -13.60471 -13.36179 -13.05408 -12.89644 -12.76254 -12.68461 -12.66929 -12.20072 -12.12766 -12.03968 -11.94623 -11.85729 -11.52833 -11.47221 -11.25138 -11.16414 -10.70903 -10.41198 -10.24340 -9.78241 -9.01638 -8.39594 -5.55798 1.39189 1.40362 1.48419 1.66214 1.75664 2.48070 2.53909 3.20107 3.36030 3.73447 3.85013 3.88783 3.98006 4.02784 4.13498 4.23511 4.34460 4.38694 4.45258 4.46650 4.61266 4.67367 4.71259 4.75982 4.81950 4.82757 4.94488 5.01284 5.03335 5.05145 5.08284 5.15284 5.17063 5.27610 5.39902 5.47833 5.51901 5.72267 5.77953 5.80900 5.93527 6.25666 6.73788 6.88645 7.40429 7.48049 8.24598 8.94370 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.005657 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.039357 B = 4948.504588 C = 5796.240090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.158 4.158 3 C -0.016 4.016 4 C -0.145 4.145 5 C -0.145 4.145 6 C -0.123 4.123 7 C 0.506 3.494 8 O -0.574 6.574 9 N -0.706 5.706 10 C 0.121 3.879 11 C 0.142 3.858 12 H 0.048 0.952 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.081 3.919 16 N -0.623 5.623 17 C -0.293 4.293 18 H 0.051 0.949 19 C -0.057 4.057 20 N -0.958 5.958 21 Si 1.100 2.900 22 H -0.318 1.318 23 H -0.262 1.262 24 H -0.288 1.288 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.405 0.595 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.022 0.978 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 8.377 0.019 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C -0.017 4.017 4 C -0.202 4.202 5 C -0.202 4.202 6 C -0.163 4.163 7 C 0.294 3.706 8 O -0.456 6.456 9 N -0.357 5.357 10 C -0.005 4.005 11 C 0.035 3.965 12 H 0.065 0.935 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.043 4.043 16 N -0.350 5.350 17 C -0.422 4.422 18 H 0.069 0.931 19 C -0.253 4.253 20 N -0.601 5.601 21 Si 0.931 3.069 22 H -0.248 1.248 23 H -0.187 1.187 24 H -0.215 1.215 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.243 0.757 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.054 8.345 -1.519 11.032 hybrid contribution -0.987 -0.552 1.201 1.650 sum -8.041 7.793 -0.318 11.202 Atomic orbital electron populations 1.24154 0.95404 1.03035 0.99451 1.22903 0.96498 0.96923 1.01274 1.19321 0.94679 0.94359 0.93323 1.22062 0.98128 0.98335 1.01630 1.21973 0.99250 1.01963 0.97011 1.21669 0.99062 0.94657 1.00941 1.20933 0.79587 0.88729 0.81318 1.90481 1.66855 1.51899 1.36340 1.46208 1.42590 1.21509 1.25388 1.21808 0.94007 0.85374 0.99309 1.21505 0.90954 0.89085 0.94953 0.93460 1.22551 0.94796 0.95146 1.02824 1.22674 0.97476 0.94452 1.00902 1.22398 0.88193 0.96199 0.97487 1.44917 1.01749 1.01325 1.86978 1.19664 1.17756 0.83088 1.21688 0.93132 1.26919 1.06086 0.94493 0.97833 1.71003 1.25659 1.16903 1.46491 0.83403 0.74962 0.72783 0.75784 1.24767 1.18703 1.21519 0.87029 0.87208 0.87645 0.91800 0.91831 0.92172 0.94335 0.91906 0.92004 0.90245 0.87768 0.75743 0.91292 0.94705 0.88009 0.90781 0.90424 0.88718 0.93517 0.96074 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.82 13.70 67.77 0.93 -2.89 16 2 C -0.16 -4.01 8.76 25.64 0.22 -3.79 16 3 C -0.02 -0.49 0.74 -52.93 -0.04 -0.52 16 4 C -0.14 -3.95 6.83 71.98 0.49 -3.46 16 5 C -0.14 -4.77 8.16 71.98 0.59 -4.18 16 6 C -0.12 -4.08 4.75 29.85 0.14 -3.94 16 7 C 0.51 19.54 7.24 87.66 0.63 20.18 16 8 O -0.57 -23.97 11.33 -3.02 -0.03 -24.01 16 9 N -0.71 -27.61 4.79 -463.07 -2.22 -29.83 16 10 C 0.12 4.45 5.23 86.38 0.45 4.90 16 11 C 0.14 4.97 3.38 45.35 0.15 5.13 16 12 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 13 C -0.11 -3.06 6.48 31.79 0.21 -2.85 16 14 C -0.12 -3.25 7.09 31.99 0.23 -3.02 16 15 C 0.08 3.19 4.63 86.85 0.40 3.59 16 16 N -0.62 -27.29 2.91 -668.25 -1.94 -29.24 16 17 C -0.29 -15.10 8.37 84.03 0.70 -14.40 16 18 H 0.05 2.75 7.02 -2.91 -0.02 2.73 16 19 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 20 N -0.96 -57.88 13.70 21.65 0.30 -57.58 16 21 Si 1.10 53.77 24.69 68.60 1.69 55.47 16 22 H -0.32 -16.34 7.11 99.48 0.71 -15.63 16 23 H -0.26 -11.43 5.97 99.48 0.59 -10.84 16 24 H -0.29 -13.78 6.40 99.48 0.64 -13.15 16 25 H 0.11 1.91 8.06 -2.91 -0.02 1.88 16 26 H 0.11 2.11 5.69 -2.91 -0.02 2.10 16 27 H 0.11 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.06 2.08 5.51 -2.38 -0.01 2.07 16 29 H 0.06 1.53 7.50 -2.38 -0.02 1.51 16 30 H 0.06 1.45 7.50 -2.39 -0.02 1.43 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.06 2.37 5.52 -2.38 -0.01 2.36 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 36 H 0.40 16.42 5.92 -92.71 -0.55 15.87 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.03 1.46 8.09 -2.39 -0.02 1.44 16 39 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 1.91 7.83 -2.39 -0.02 1.89 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.05 1.94 6.26 -2.38 -0.01 1.93 16 44 H 0.02 0.89 5.13 -2.39 -0.01 0.88 16 45 H 0.25 15.08 8.73 -92.71 -0.81 14.27 16 Total: -1.00 -64.42 337.84 3.57 -60.85 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.19 Total: 32.32 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.58 Total: -7.99 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -3.87 Total: -116.64 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.03 Total: -24.01 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 1.69 Total: 55.47 kcal Total: -64.42 3.57 -60.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567368540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.883 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds