Wall clock time and date at job start Fri Apr 10 2020 17:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00329 * 2 1 4 4 C 1.53000 * 109.47176 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47501 * 239.99760 * 3 2 1 6 6 C 1.52997 * 109.47289 * 119.99672 * 3 2 1 7 7 C 1.50701 * 109.47363 * 180.02562 * 6 3 2 8 8 O 1.21283 * 119.99838 * 359.97438 * 7 6 3 9 9 N 1.34781 * 120.00013 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99786 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47135 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47499 * 180.02562 * 11 10 9 13 13 C 1.36943 * 120.00274 * 270.00442 * 12 11 10 14 14 H 1.07997 * 120.00300 * 144.92526 * 13 12 11 15 15 C 1.38817 * 119.99408 * 324.92321 * 13 12 11 16 16 N 1.31620 * 120.00119 * 337.93451 * 15 13 12 17 17 Si 1.86796 * 119.99584 * 157.93810 * 15 13 12 18 18 H 1.48491 * 109.47473 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47099 * 120.00190 * 17 15 13 20 20 H 1.48498 * 109.47119 * 239.99265 * 17 15 13 21 21 C 1.46504 * 120.00237 * 89.99677 * 12 11 10 22 22 C 1.53000 * 117.49921 * 183.24237 * 21 12 11 23 23 C 1.52998 * 117.49703 * 114.57839 * 21 12 11 24 24 H 1.07996 * 119.99714 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00245 * 179.97438 * 1 2 3 26 26 H 1.08008 * 120.00005 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47192 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47213 * 300.00243 * 4 3 2 29 29 H 1.09008 * 109.47014 * 60.00074 * 4 3 2 30 30 H 1.09005 * 109.46925 * 299.99968 * 5 3 2 31 31 H 1.08998 * 109.46944 * 59.99333 * 5 3 2 32 32 H 1.08995 * 109.47526 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47455 * 60.00164 * 6 3 2 34 34 H 1.09002 * 109.47515 * 300.00034 * 6 3 2 35 35 H 0.96999 * 120.00208 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.47192 * 60.00004 * 10 9 7 37 37 H 1.09004 * 109.47527 * 300.00074 * 10 9 7 38 38 H 1.09005 * 109.47091 * 59.99924 * 11 10 9 39 39 H 1.08998 * 109.47356 * 300.00379 * 11 10 9 40 40 H 0.96995 * 119.99672 * 175.91349 * 16 15 13 41 41 H 1.09004 * 115.54877 * 328.91115 * 21 12 11 42 42 H 1.08998 * 117.50153 * 359.97438 * 22 21 12 43 43 H 1.08995 * 117.49708 * 145.02504 * 22 21 12 44 44 H 1.08995 * 117.49988 * 214.98174 * 23 21 12 45 45 H 1.08997 * 117.49880 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9430 1.3861 1.2492 7 6 3.6962 2.6914 1.2496 8 8 3.5447 3.4791 0.3399 9 7 4.5388 2.9830 2.2603 10 6 5.2713 4.2517 2.2603 11 6 6.1518 4.3323 3.5089 12 7 6.8838 5.6012 3.5093 13 6 8.1152 5.6815 2.9155 14 1 8.4120 6.5875 2.4080 15 6 8.9820 4.5984 2.9659 16 7 8.8431 3.6876 3.9059 17 14 10.3454 4.4337 1.6998 18 1 10.2870 5.5797 0.7574 19 1 11.6614 4.4245 2.3879 20 1 10.1717 3.1652 0.9475 21 6 6.2986 6.7844 4.1448 22 6 7.0775 8.0976 4.0458 23 6 7.0075 7.3472 5.3783 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.6144 3.4120 -0.0002 28 1 0.4430 2.4101 -0.8908 29 1 0.4423 2.4105 0.8892 30 1 3.6515 0.5575 -1.2491 31 1 2.3166 1.3282 -2.1392 32 1 3.4886 2.3298 -1.2490 33 1 3.6514 0.5576 1.2494 34 1 2.3164 1.3284 2.1393 35 1 4.6603 2.3529 2.9876 36 1 4.5630 5.0803 2.2606 37 1 5.8978 4.3097 1.3701 38 1 6.8601 3.5038 3.5081 39 1 5.5257 4.2742 4.3993 40 1 9.4103 2.9008 3.9063 41 1 5.2103 6.8416 4.1198 42 1 8.0256 8.0812 3.5083 43 1 6.5017 9.0187 3.9563 44 1 6.3858 7.7751 6.1647 45 1 7.9090 6.8369 5.7172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567442862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:46 Heat of formation + Delta-G solvation = 23.758471 kcal Electronic energy + Delta-G solvation = -22312.981961 eV Core-core repulsion = 19139.489569 eV Total energy + Delta-G solvation = -3173.492392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.92866 -37.39771 -36.88910 -34.68720 -33.22514 -31.39012 -30.81719 -28.71108 -27.20908 -26.84448 -24.37623 -22.64715 -21.64439 -21.24914 -20.10975 -19.70839 -18.20391 -16.94100 -16.18337 -15.62417 -15.57323 -15.28633 -15.09815 -14.58570 -14.27248 -13.97759 -13.83518 -13.37603 -12.88267 -12.67791 -12.58093 -12.02069 -11.94084 -11.69765 -11.58293 -11.24956 -11.08937 -11.04341 -10.89975 -10.76718 -10.73473 -10.63338 -10.30176 -10.12599 -9.84291 -9.66805 -9.48111 -9.36089 -9.15128 -8.56564 -8.45355 -6.66875 -5.87678 -3.47949 2.17540 2.98113 3.30524 3.40352 3.43732 3.61949 4.40600 4.70035 4.75689 4.89697 4.93200 5.18835 5.21017 5.26389 5.30018 5.40157 5.56479 5.63657 5.72468 5.83599 5.87783 6.01645 6.03118 6.06278 6.09788 6.14229 6.19926 6.28326 6.44117 6.47513 6.49207 6.52003 6.57339 6.62770 6.73224 6.93437 6.96873 7.06802 7.19077 7.51492 7.74214 7.95366 8.38676 8.64042 9.06161 9.68872 10.23629 11.08616 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.003960 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.667197 B = 7068.404038 C = 7882.511681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C -0.019 4.019 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.130 4.130 7 C 0.508 3.492 8 O -0.540 6.540 9 N -0.721 5.721 10 C 0.100 3.900 11 C 0.136 3.864 12 N -0.548 5.548 13 C -0.258 4.258 14 H 0.069 0.931 15 C 0.011 3.989 16 N -0.884 5.884 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.287 1.287 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.397 0.603 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.031 0.969 40 H 0.254 0.746 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.093 -6.136 -3.208 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.160 4.160 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.207 4.207 6 C -0.170 4.170 7 C 0.294 3.706 8 O -0.419 6.419 9 N -0.372 5.372 10 C -0.026 4.026 11 C 0.009 3.991 12 N -0.265 5.265 13 C -0.387 4.387 14 H 0.086 0.914 15 C -0.189 4.189 16 N -0.526 5.526 17 Si 0.725 3.275 18 H -0.199 1.199 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.261 4.261 24 H 0.122 0.878 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.033 -5.683 -3.798 14.717 hybrid contribution 0.816 -0.608 -0.145 1.028 sum -12.217 -6.291 -3.943 14.296 Atomic orbital electron populations 1.23988 0.96188 1.01920 1.01691 1.22996 0.95933 0.97759 0.99270 1.19356 0.94918 0.92994 0.94695 1.22181 0.98471 0.99992 1.00555 1.22060 0.99158 1.03848 0.95601 1.21714 0.99235 0.96349 0.99727 1.20546 0.79698 0.88309 0.82021 1.90550 1.64970 1.50836 1.35513 1.46152 1.44239 1.22108 1.24682 1.22277 0.94337 0.83086 1.02859 1.21103 0.94065 0.92440 0.91503 1.43247 1.16683 1.04710 1.61844 1.19147 0.91021 1.01583 1.26947 0.91385 1.25117 0.97082 0.99607 0.97079 1.70043 1.40691 1.11871 1.30026 0.86337 0.81653 0.78007 0.81518 1.19914 1.21579 1.21336 1.21232 0.93408 0.88057 0.96277 1.23041 1.03531 0.94976 1.01769 1.23359 1.04840 1.06433 0.91462 0.87842 0.88906 0.87600 0.89294 0.93039 0.93389 0.93473 0.93235 0.89189 0.89053 0.89181 0.76985 0.93267 0.91693 0.87702 0.95103 0.93568 0.89504 0.88422 0.90680 0.91182 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 13.70 29.02 0.40 -1.43 16 2 C -0.14 -1.40 8.76 -36.03 -0.32 -1.72 16 3 C -0.02 -0.22 0.74 -155.66 -0.11 -0.34 16 4 C -0.16 -1.88 6.83 37.16 0.25 -1.63 16 5 C -0.15 -1.90 8.16 37.16 0.30 -1.59 16 6 C -0.13 -1.50 4.75 -27.88 -0.13 -1.63 16 7 C 0.51 7.84 7.24 -10.98 -0.08 7.76 16 8 O -0.54 -9.97 11.35 5.55 0.06 -9.91 16 9 N -0.72 -11.43 5.56 -60.29 -0.33 -11.76 16 10 C 0.10 1.95 6.00 -4.04 -0.02 1.93 16 11 C 0.14 2.94 5.45 -4.05 -0.02 2.91 16 12 N -0.55 -13.05 2.78 -165.66 -0.46 -13.51 16 13 C -0.26 -6.74 8.63 -15.05 -0.13 -6.87 16 14 H 0.07 1.80 6.55 -52.49 -0.34 1.46 16 15 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 16 N -0.88 -24.07 11.33 55.49 0.63 -23.44 16 17 Si 0.90 21.07 29.61 -169.99 -5.03 16.04 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.12 2.50 6.56 -67.93 -0.45 2.05 16 22 C -0.19 -3.81 9.80 -26.69 -0.26 -4.07 16 23 C -0.22 -4.40 10.36 -26.69 -0.28 -4.68 16 24 H 0.10 0.94 5.69 -52.49 -0.30 0.64 16 25 H 0.09 0.71 8.06 -52.48 -0.42 0.29 16 26 H 0.11 0.94 8.06 -52.48 -0.42 0.51 16 27 H 0.09 1.31 5.51 -51.93 -0.29 1.03 16 28 H 0.05 0.57 7.50 -51.93 -0.39 0.19 16 29 H 0.05 0.53 7.50 -51.92 -0.39 0.14 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.39 5.51 -51.93 -0.29 1.10 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 5.32 8.47 -40.82 -0.35 4.97 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.11 2.54 5.36 -51.93 -0.28 2.26 16 39 H 0.03 0.62 8.07 -51.93 -0.42 0.21 16 40 H 0.25 6.69 8.32 -40.82 -0.34 6.35 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -28.56 356.25 -8.28 -36.84 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.58 Total: 9.46 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.93 Total: -9.08 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.17 Total: -48.71 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.06 Total: -9.91 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.56 -8.28 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567442862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.596 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds