Wall clock time and date at job start Fri Apr 10 2020 17:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47214 * 2 1 4 4 C 1.50700 * 119.99815 * 264.67094 * 3 2 1 5 5 C 1.32992 * 119.99937 * 84.67301 * 3 2 1 6 6 C 1.47099 * 119.99992 * 352.65963 * 5 3 2 7 7 O 1.21619 * 120.00186 * 2.77931 * 6 5 3 8 8 N 1.34777 * 119.99801 * 182.78515 * 6 5 3 9 9 C 1.46917 * 120.63462 * 354.72966 * 8 6 5 10 10 C 1.53186 * 108.78184 * 126.37278 * 9 8 6 11 11 C 1.53040 * 109.33621 * 54.61741 * 10 9 8 12 12 H 1.09007 * 109.46091 * 178.63262 * 11 10 9 13 13 N 1.46498 * 109.45922 * 58.67806 * 11 10 9 14 14 C 1.36932 * 120.00373 * 84.99775 * 13 11 10 15 15 H 1.08002 * 119.99784 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00502 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99554 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00229 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47357 * 60.00090 * 18 16 14 20 20 H 1.48499 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47168 * 299.99842 * 18 16 14 22 22 C 1.53033 * 109.54156 * 298.68851 * 11 10 9 23 23 H 1.09005 * 109.50012 * 301.34885 * 22 11 10 24 24 C 1.53008 * 109.50022 * 181.28425 * 22 11 10 25 25 C 1.46932 * 120.62935 * 174.71235 * 8 6 5 26 26 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47031 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.46963 * 60.00006 * 1 2 3 29 29 H 1.09009 * 109.46872 * 239.99991 * 2 1 3 30 30 H 1.08993 * 109.47323 * 120.00264 * 2 1 3 31 31 H 1.08993 * 109.47492 * 269.99607 * 4 3 2 32 32 H 1.09002 * 109.47339 * 30.00472 * 4 3 2 33 33 H 1.09009 * 109.46710 * 150.00039 * 4 3 2 34 34 H 1.08002 * 119.99813 * 172.65938 * 5 3 2 35 35 H 1.09001 * 109.58706 * 6.58268 * 9 8 6 36 36 H 1.09009 * 109.59051 * 246.16622 * 9 8 6 37 37 H 1.08997 * 109.50639 * 174.58729 * 10 9 8 38 38 H 1.08997 * 109.49578 * 294.65610 * 10 9 8 39 39 H 0.97001 * 120.00036 * 264.99824 * 13 11 10 40 40 H 0.97007 * 119.99721 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.46792 * 300.13041 * 24 22 11 42 42 H 1.09002 * 109.46706 * 60.13130 * 24 22 11 43 43 H 1.08998 * 109.47287 * 180.12558 * 24 22 11 44 44 H 1.09003 * 109.58515 * 353.41090 * 25 8 6 45 45 H 1.09001 * 109.58465 * 113.69527 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3978 2.0908 -1.2995 5 6 2.1532 2.0834 1.1468 6 6 1.6472 1.4917 2.3949 7 8 1.1641 0.3756 2.3867 8 7 1.7189 2.1866 3.5475 9 6 2.4021 3.4863 3.5969 10 6 1.4445 4.5247 4.1897 11 6 0.9366 4.0297 5.5458 12 1 0.2739 4.7780 5.9806 13 7 2.0744 3.8066 6.4412 14 6 2.5924 4.8487 7.1630 15 1 2.1618 5.8350 7.0724 16 6 3.6702 4.6373 8.0118 17 7 4.1946 3.4352 8.1226 18 14 4.3762 6.0588 8.9968 19 1 3.3245 6.6165 9.8846 20 1 5.5134 5.5741 9.8197 21 1 4.8524 7.1158 8.0689 22 6 0.1716 2.7176 5.3581 23 1 -0.6613 2.8769 4.6732 24 6 -0.3630 2.2402 6.7099 25 6 1.1149 1.6588 4.7786 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.4506 1.9113 -1.5174 32 1 1.7855 1.6825 -2.1036 33 1 2.2215 3.1634 -1.2174 34 1 2.6229 3.0558 1.1617 35 1 2.6888 3.7869 2.5891 36 1 3.2905 3.4086 4.2238 37 1 1.9695 5.4708 4.3211 38 1 0.6002 4.6677 3.5153 39 1 2.4610 2.9207 6.5229 40 1 4.9476 3.2873 8.7161 41 1 0.4700 2.0822 7.3947 42 1 -1.0342 2.9939 7.1218 43 1 -0.9059 1.3046 6.5760 44 1 0.5521 0.7536 4.5505 45 1 1.8984 1.4297 5.5009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568354020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:00 Heat of formation + Delta-G solvation = -28.972527 kcal Electronic energy + Delta-G solvation = -23138.404138 eV Core-core repulsion = 19962.625158 eV Total energy + Delta-G solvation = -3175.778980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38137 -39.41957 -36.81916 -35.76956 -34.48899 -32.95976 -31.77222 -30.87292 -29.32972 -27.36755 -26.31461 -25.26620 -24.48226 -23.04061 -21.65443 -19.89723 -19.29467 -18.79508 -18.27705 -16.74966 -16.56190 -16.14952 -16.00385 -15.56483 -15.51649 -15.07147 -14.77584 -14.54057 -14.26611 -14.11593 -13.83332 -13.68929 -13.51848 -13.10227 -12.99241 -12.83000 -12.82117 -12.77982 -12.62938 -12.40696 -12.15752 -11.95171 -11.93487 -11.87676 -11.65093 -11.45923 -11.14581 -10.84453 -10.33214 -10.05210 -9.41175 -8.91033 -7.87617 -5.13997 0.45868 1.50205 1.51612 1.57517 2.14979 2.35309 2.60765 3.45917 3.63851 3.80910 3.90199 3.91162 4.06974 4.12482 4.17429 4.36741 4.41568 4.49183 4.57116 4.60511 4.65887 4.68651 4.70465 4.77581 4.86864 4.87028 4.98463 5.00612 5.05898 5.11270 5.14128 5.24125 5.28914 5.30072 5.38098 5.42661 5.49610 5.57310 5.60949 5.68807 5.79082 6.33823 6.60119 7.29948 7.41229 8.18020 8.41679 9.35575 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.004322 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.071635 B = 6477.578520 C = 6981.210384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C -0.020 4.020 4 C -0.123 4.123 5 C -0.251 4.251 6 C 0.535 3.465 7 O -0.573 6.573 8 N -0.602 5.602 9 C 0.120 3.880 10 C -0.141 4.141 11 C 0.171 3.829 12 H 0.047 0.953 13 N -0.725 5.725 14 C -0.229 4.229 15 H 0.075 0.925 16 C -0.073 4.073 17 N -0.970 5.970 18 Si 0.965 3.035 19 H -0.282 1.282 20 H -0.302 1.302 21 H -0.279 1.279 22 C -0.097 4.097 23 H 0.084 0.916 24 C -0.131 4.131 25 C 0.127 3.873 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 -1.471 -18.402 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C -0.022 4.022 4 C -0.179 4.179 5 C -0.272 4.272 6 C 0.329 3.671 7 O -0.456 6.456 8 N -0.333 5.333 9 C -0.002 4.002 10 C -0.182 4.182 11 C 0.063 3.937 12 H 0.065 0.935 13 N -0.366 5.366 14 C -0.361 4.361 15 H 0.093 0.907 16 C -0.265 4.265 17 N -0.621 5.621 18 Si 0.795 3.205 19 H -0.208 1.208 20 H -0.229 1.229 21 H -0.205 1.205 22 C -0.117 4.117 23 H 0.103 0.897 24 C -0.189 4.189 25 C 0.004 3.996 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.248 -1.853 -18.306 19.776 hybrid contribution 0.949 0.371 1.384 1.719 sum -6.299 -1.482 -16.922 18.117 Atomic orbital electron populations 1.21483 0.94292 1.01586 1.00972 1.20935 0.97095 0.93224 1.02866 1.22896 0.88926 0.95043 0.95348 1.21063 1.03200 1.00931 0.92737 1.22525 1.09535 1.03584 0.91526 1.19087 0.78839 0.84702 0.84490 1.90671 1.48371 1.19993 1.86563 1.48051 1.55229 1.21230 1.08794 1.21683 0.94851 0.81782 1.01889 1.22387 0.99386 0.98278 0.98123 1.20448 0.88681 0.94742 0.89848 0.93517 1.42586 1.35621 1.08897 1.49484 1.19554 1.09440 0.90777 1.16291 0.90665 1.25398 1.00240 0.98479 1.02397 1.69812 1.27442 1.21904 1.42986 0.85332 0.77364 0.79170 0.78600 1.20836 1.22900 1.20483 1.21611 0.97367 0.95159 0.97543 0.89729 1.21599 1.00395 1.01019 0.95887 1.21405 0.95947 0.97068 0.85199 0.92697 0.94232 0.92023 0.90230 0.90910 0.89161 0.89540 0.90062 0.83775 0.87770 0.93511 0.91538 0.90661 0.79403 0.94426 0.94285 0.92165 0.91766 0.90049 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.34 71.98 0.67 -2.16 16 2 C -0.10 -2.36 5.34 29.85 0.16 -2.20 16 3 C -0.02 -0.42 5.36 -17.62 -0.09 -0.51 16 4 C -0.12 -1.54 10.01 71.24 0.71 -0.83 16 5 C -0.25 -6.18 8.95 23.43 0.21 -5.97 16 6 C 0.54 17.19 7.39 86.57 0.64 17.83 16 7 O -0.57 -20.72 10.67 -4.09 -0.04 -20.76 16 8 N -0.60 -19.97 2.97 -823.18 -2.45 -22.41 16 9 C 0.12 3.83 6.09 86.36 0.53 4.35 16 10 C -0.14 -4.49 5.78 30.67 0.18 -4.31 16 11 C 0.17 6.37 2.53 45.02 0.11 6.48 16 12 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 13 N -0.72 -34.22 3.64 -322.82 -1.17 -35.40 16 14 C -0.23 -12.05 9.93 84.03 0.83 -11.22 16 15 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 17 N -0.97 -58.46 13.06 21.65 0.28 -58.18 16 18 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 C -0.10 -3.18 2.67 -10.72 -0.03 -3.21 16 23 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 24 C -0.13 -4.27 9.06 71.98 0.65 -3.62 16 25 C 0.13 4.50 5.40 86.36 0.47 4.96 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 1.10 6.39 -2.39 -0.02 1.09 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.40 8.09 -2.38 -0.02 1.38 16 30 H 0.07 2.14 5.85 -2.39 -0.01 2.13 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.08 0.88 8.07 -2.38 -0.02 0.86 16 34 H 0.14 2.96 5.86 -2.91 -0.02 2.94 16 35 H 0.10 2.61 5.30 -2.39 -0.01 2.60 16 36 H 0.05 1.84 7.74 -2.38 -0.02 1.82 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.37 19.39 5.93 -92.71 -0.55 18.84 16 40 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 41 H 0.04 1.52 7.53 -2.39 -0.02 1.50 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.08 2.88 7.04 -2.39 -0.02 2.86 16 45 H 0.04 1.80 6.65 -2.39 -0.02 1.78 16 Total: -1.00 -64.32 346.49 4.57 -59.75 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.42 Total: 33.60 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.51 Total: -4.01 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -3.34 Total: -115.99 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.04 Total: -20.76 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -64.32 4.57 -59.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568354020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.773 kcal (2) G-P(sol) polarization free energy of solvation -64.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds