Wall clock time and date at job start Fri Apr 10 2020 17:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47128 * 2 1 4 4 C 1.32998 * 120.00110 * 125.43190 * 3 2 1 5 5 C 1.50701 * 119.99795 * 185.66717 * 4 3 2 6 6 C 1.47101 * 119.99977 * 5.66321 * 4 3 2 7 7 O 1.21615 * 119.99942 * 255.47583 * 6 4 3 8 8 N 1.34781 * 119.99634 * 75.47513 * 6 4 3 9 9 C 1.46499 * 119.99719 * 179.97438 * 8 6 4 10 10 H 1.08999 * 110.01421 * 33.61104 * 9 8 6 11 11 C 1.54268 * 110.03311 * 272.16781 * 9 8 6 12 12 C 1.54882 * 104.19481 * 264.32580 * 11 9 8 13 13 C 1.54968 * 102.77942 * 322.08167 * 12 11 9 14 14 C 1.53876 * 110.03130 * 154.99832 * 9 8 6 15 15 H 1.09002 * 110.03049 * 359.95682 * 14 9 8 16 16 C 1.52999 * 110.03386 * 238.56829 * 14 9 8 17 17 N 1.46501 * 109.46951 * 175.69200 * 16 14 9 18 18 C 1.36940 * 119.99738 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00257 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99657 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99656 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46897 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.47147 * 299.99308 * 22 20 18 25 25 H 1.48491 * 109.47309 * 59.99784 * 22 20 18 26 26 H 1.09008 * 109.46895 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46945 * 299.99920 * 1 2 3 28 28 H 1.08995 * 109.47040 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.47158 * 240.00366 * 2 1 3 30 30 H 1.08998 * 109.46973 * 120.00171 * 2 1 3 31 31 H 1.08002 * 119.99909 * 305.43456 * 3 2 1 32 32 H 1.09003 * 109.46961 * 269.99539 * 5 4 3 33 33 H 1.08999 * 109.47299 * 29.99629 * 5 4 3 34 34 H 1.08999 * 109.46811 * 150.00116 * 5 4 3 35 35 H 0.96997 * 120.00041 * 0.02562 * 8 6 4 36 36 H 1.08998 * 110.48639 * 23.00488 * 11 9 8 37 37 H 1.09004 * 110.48403 * 145.51312 * 11 9 8 38 38 H 1.09000 * 110.75812 * 80.37314 * 12 11 9 39 39 H 1.09001 * 110.75524 * 203.74328 * 12 11 9 40 40 H 1.09000 * 110.48036 * 279.23725 * 13 12 11 41 41 H 1.08996 * 110.52910 * 156.56675 * 13 12 11 42 42 H 1.08998 * 109.46986 * 55.69591 * 16 14 9 43 43 H 1.08999 * 109.47050 * 295.69296 * 16 14 9 44 44 H 0.97002 * 119.99930 * 0.02562 * 17 16 14 45 45 H 0.96998 * 120.00338 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8836 1.8252 0.9385 5 6 3.2867 3.2752 1.0157 6 6 3.4314 0.8571 1.9011 7 8 3.0153 0.8337 3.0436 8 7 4.3944 -0.0040 1.5168 9 6 4.9404 -0.9677 2.4756 10 1 4.1628 -1.2835 3.1710 11 6 6.1168 -0.3360 3.2481 12 6 7.3743 -0.8035 2.4741 13 6 7.0108 -2.2562 2.0752 14 6 5.5086 -2.1883 1.7305 15 1 5.3775 -2.0638 0.6556 16 6 4.8051 -3.4632 2.2000 17 7 5.2814 -4.6024 1.4116 18 6 4.7889 -5.8568 1.6544 19 1 4.0496 -6.0065 2.4274 20 6 5.2406 -6.9363 0.9077 21 7 6.1419 -6.7540 -0.0340 22 14 4.5693 -8.6477 1.2395 23 1 5.2075 -9.6178 0.3137 24 1 4.8665 -9.0326 2.6426 25 1 3.0999 -8.6531 1.0253 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7011 2.1106 -0.7621 32 1 4.1712 3.4397 0.4002 33 1 2.4702 3.8992 0.6526 34 1 3.5106 3.5354 2.0503 35 1 4.7265 0.0150 0.6056 36 1 6.0425 0.7514 3.2340 37 1 6.1399 -0.7025 4.2744 38 1 7.5334 -0.1887 1.5882 39 1 8.2528 -0.7882 3.1191 40 1 7.1801 -2.9349 2.9111 41 1 7.5880 -2.5695 1.2053 42 1 3.7287 -3.3541 2.0672 43 1 5.0258 -3.6329 3.2538 44 1 5.9457 -4.4680 0.7176 45 1 6.4908 -5.8655 -0.2060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568519436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:14 Heat of formation + Delta-G solvation = -58.982150 kcal Electronic energy + Delta-G solvation = -22461.540603 eV Core-core repulsion = 19284.460309 eV Total energy + Delta-G solvation = -3177.080295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37550 -39.46582 -36.82944 -36.64047 -34.57279 -33.29409 -33.13195 -30.06971 -29.00329 -27.85493 -26.18637 -24.78230 -23.80690 -22.96617 -21.66853 -21.19722 -19.92646 -19.30710 -17.75841 -17.31004 -16.84008 -16.64327 -15.97002 -15.85514 -15.69715 -15.19986 -15.06351 -14.94093 -14.63899 -14.30414 -13.94189 -13.80265 -13.58413 -13.33167 -12.95854 -12.89663 -12.74203 -12.62290 -12.55920 -12.07970 -12.03975 -11.96379 -11.91437 -11.87022 -11.84574 -11.59074 -11.29379 -10.97464 -10.91633 -10.14872 -9.92242 -9.14930 -8.43136 -5.36872 0.74015 1.57012 1.57739 1.66554 1.83546 2.20406 2.68641 3.33227 3.37197 3.56353 3.63130 3.78301 3.85550 3.97578 4.06751 4.27184 4.32875 4.35677 4.39850 4.48206 4.50951 4.51692 4.54610 4.67179 4.73898 4.79329 4.88064 4.89320 4.94342 4.95656 5.03914 5.06919 5.14279 5.16192 5.22877 5.23597 5.39332 5.40352 5.50475 5.54668 5.62883 6.45953 6.47802 7.06250 7.14854 7.96195 8.07896 9.09063 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.004287 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.726609 B = 6529.047062 C = 7706.868799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.094 4.094 4 C -0.186 4.186 5 C -0.098 4.098 6 C 0.556 3.444 7 O -0.588 6.588 8 N -0.703 5.703 9 C 0.151 3.849 10 H 0.064 0.936 11 C -0.124 4.124 12 C -0.109 4.109 13 C -0.111 4.111 14 C -0.090 4.090 15 H 0.080 0.920 16 C 0.169 3.831 17 N -0.750 5.750 18 C -0.341 4.341 19 H 0.060 0.940 20 C -0.098 4.098 21 N -0.970 5.970 22 Si 1.127 2.873 23 H -0.289 1.289 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.159 0.841 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.412 0.588 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.005 0.995 43 H 0.015 0.985 44 H 0.364 0.636 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 21.451 -1.189 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.112 4.112 4 C -0.189 4.189 5 C -0.155 4.155 6 C 0.344 3.656 7 O -0.469 6.469 8 N -0.353 5.353 9 C 0.046 3.954 10 H 0.082 0.918 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.149 4.149 14 C -0.109 4.109 15 H 0.099 0.901 16 C 0.042 3.958 17 N -0.395 5.395 18 C -0.473 4.473 19 H 0.078 0.922 20 C -0.289 4.289 21 N -0.618 5.618 22 Si 0.951 3.049 23 H -0.214 1.214 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.177 0.823 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.197 0.803 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.165 19.810 -0.636 20.253 hybrid contribution 0.170 1.186 0.134 1.206 sum -3.996 20.997 -0.502 21.379 Atomic orbital electron populations 1.21651 0.93555 1.02109 1.02648 1.20826 0.97724 0.94636 1.01935 1.23606 0.94402 0.97377 0.95833 1.21618 1.03052 0.97105 0.97139 1.20679 1.03335 0.88857 1.02609 1.19046 0.78285 0.80590 0.87644 1.90782 1.61442 1.72409 1.22252 1.46154 1.39042 1.34960 1.15180 1.21431 0.95794 0.87620 0.90604 0.91755 1.22679 0.94006 1.00449 0.99088 1.22476 0.97281 0.94430 1.00419 1.22336 0.93610 0.97870 1.01122 1.22066 0.96221 0.92524 1.00137 0.90144 1.20732 0.94994 0.86402 0.93693 1.42453 1.50370 1.04052 1.42584 1.20370 1.21325 0.87665 1.17893 0.92205 1.27181 0.99004 1.06674 0.96077 1.70992 1.32475 1.23608 1.34716 0.82648 0.75288 0.71075 0.75894 1.21448 1.20488 1.20531 0.92769 0.93280 0.90134 0.89579 0.94486 0.82335 0.89332 0.89137 0.92712 0.75170 0.90905 0.91034 0.89976 0.90077 0.92801 0.91686 0.97728 0.96703 0.80330 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.89 71.98 0.71 -1.92 16 2 C -0.11 -2.37 6.18 29.85 0.18 -2.19 16 3 C -0.09 -1.57 9.20 24.52 0.23 -1.34 16 4 C -0.19 -3.70 5.74 -18.70 -0.11 -3.81 16 5 C -0.10 -1.38 10.03 71.24 0.71 -0.66 16 6 C 0.56 15.27 5.26 86.57 0.46 15.73 16 7 O -0.59 -21.54 16.76 -4.08 -0.07 -21.61 16 8 N -0.70 -17.31 4.98 -442.69 -2.20 -19.51 16 9 C 0.15 4.33 2.90 45.72 0.13 4.46 16 10 H 0.06 2.24 7.09 -2.39 -0.02 2.22 16 11 C -0.12 -3.03 6.54 31.67 0.21 -2.82 16 12 C -0.11 -2.38 6.91 31.91 0.22 -2.15 16 13 C -0.11 -3.26 6.05 31.70 0.19 -3.07 16 14 C -0.09 -2.86 2.73 -10.07 -0.03 -2.89 16 15 H 0.08 2.49 7.62 -2.39 -0.02 2.47 16 16 C 0.17 7.17 5.31 86.38 0.46 7.63 16 17 N -0.75 -38.77 5.44 -343.45 -1.87 -40.64 16 18 C -0.34 -19.84 9.99 84.03 0.84 -19.00 16 19 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 20 C -0.10 -5.74 5.50 84.86 0.47 -5.28 16 21 N -0.97 -60.65 13.70 21.65 0.30 -60.36 16 22 Si 1.13 52.58 29.92 68.60 2.05 54.63 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.02 6.31 -2.39 -0.02 1.00 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.91 8.07 -2.39 -0.02 0.90 16 34 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 35 H 0.41 8.17 8.30 -92.71 -0.77 7.40 16 36 H 0.07 1.71 8.04 -2.39 -0.02 1.69 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.79 7.77 -2.39 -0.02 1.77 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.02 0.66 8.02 -2.39 -0.02 0.64 16 44 H 0.36 19.01 6.36 -92.71 -0.59 18.42 16 45 H 0.25 15.17 6.77 -92.71 -0.63 14.54 16 Total: -1.00 -73.73 364.15 2.63 -71.10 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.25 Total: 33.69 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.67 Total: -17.30 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -3.77 Total: -120.51 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.07 Total: -21.61 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.05 Total: 54.63 kcal Total: -73.73 2.63 -71.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568519436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.117 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds