Wall clock time and date at job start Fri Apr 10 2020 17:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50696 * 120.00275 * 2 1 4 4 C 1.53004 * 109.47157 * 124.99958 * 3 2 1 5 5 C 1.50700 * 109.47237 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99804 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00300 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00579 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46824 * 325.00438 * 8 7 5 10 10 C 1.52998 * 109.47341 * 84.99728 * 8 7 5 11 11 C 1.53001 * 109.47586 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46855 * 300.00505 * 11 10 8 13 13 C 1.52998 * 109.47470 * 59.99798 * 12 11 10 14 14 C 1.52994 * 109.47443 * 204.99985 * 8 7 5 15 15 H 1.08995 * 109.47674 * 299.99764 * 14 8 7 16 16 C 1.52998 * 109.47095 * 59.99968 * 14 8 7 17 17 N 1.46506 * 109.47237 * 184.99775 * 16 14 8 18 18 C 1.36939 * 120.00073 * 179.72302 * 17 16 14 19 19 H 1.08004 * 119.99859 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99849 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00056 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00155 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46896 * 90.00225 * 22 20 18 24 24 H 1.48501 * 109.47275 * 210.00265 * 22 20 18 25 25 H 1.48499 * 109.47039 * 330.00065 * 22 20 18 26 26 H 1.08001 * 120.00209 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99926 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99519 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47172 * 5.00221 * 3 2 1 30 30 H 1.08993 * 109.47495 * 245.00045 * 3 2 1 31 31 H 1.08990 * 109.47201 * 60.00005 * 4 3 2 32 32 H 1.08999 * 109.47062 * 299.99984 * 4 3 2 33 33 H 0.97003 * 119.99751 * 359.97438 * 7 5 4 34 34 H 1.09001 * 109.47186 * 300.00830 * 10 8 7 35 35 H 1.08999 * 109.46837 * 60.00131 * 10 8 7 36 36 H 1.09008 * 109.46644 * 60.00133 * 11 10 8 37 37 H 1.08995 * 109.47001 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.47048 * 180.02562 * 12 11 10 39 39 H 1.09008 * 109.47190 * 299.99293 * 12 11 10 40 40 H 1.09000 * 109.46704 * 180.02562 * 13 12 11 41 41 H 1.08991 * 109.47281 * 59.99838 * 13 12 11 42 42 H 1.09001 * 109.47671 * 65.00115 * 16 14 8 43 43 H 1.08998 * 109.47454 * 305.00112 * 16 14 8 44 44 H 0.97005 * 119.99811 * 0.02562 * 17 16 14 45 45 H 0.97000 * 119.99835 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7882 2.6383 1.1820 6 8 3.5697 3.4647 0.3216 7 7 4.7051 2.8870 2.1379 8 6 5.4377 4.1556 2.1380 9 1 5.6190 4.4705 1.1103 10 6 4.6111 5.2219 2.8596 11 6 5.3759 6.5470 2.8592 12 6 6.7131 6.3642 3.5796 13 6 7.5398 5.2981 2.8579 14 6 6.7747 3.9725 2.8587 15 1 6.5935 3.6577 3.8864 16 6 7.6014 2.9064 2.1370 17 7 8.8287 2.6453 2.8932 18 6 9.7280 1.7174 2.4398 19 1 9.5326 1.1783 1.5245 20 6 10.8906 1.4697 3.1565 21 7 11.7547 0.5774 2.7210 22 14 11.2288 2.4026 4.7392 23 1 10.6571 1.6536 5.8870 24 1 12.6950 2.5484 4.9242 25 1 10.6032 3.7473 4.6645 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6212 1.4026 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2355 2.1130 33 1 4.8801 2.2259 2.8258 34 1 3.6585 5.3523 2.3461 35 1 4.4297 4.9070 3.8873 36 1 5.5569 6.8617 1.8313 37 1 4.7871 7.3064 3.3737 38 1 7.2578 7.3085 3.5797 39 1 6.5321 6.0496 4.6075 40 1 8.4923 5.1677 3.3715 41 1 7.7208 5.6127 1.8302 42 1 7.8582 3.2600 1.1385 43 1 7.0204 1.9875 2.0587 44 1 9.0023 3.1266 3.7174 45 1 12.5673 0.4046 3.2217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569157948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:27 Heat of formation + Delta-G solvation = -36.787115 kcal Electronic energy + Delta-G solvation = -22281.497735 eV Core-core repulsion = 19105.379890 eV Total energy + Delta-G solvation = -3176.117846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17301 -38.38485 -35.54426 -34.81602 -34.12153 -31.96118 -31.10835 -30.05065 -29.18695 -25.59361 -24.55759 -22.80707 -21.89243 -20.73971 -20.35429 -19.97827 -19.63865 -17.73544 -16.85527 -16.25970 -15.91600 -15.02496 -14.69634 -14.66448 -14.36047 -14.09290 -13.86249 -13.67078 -13.31130 -13.07882 -12.77517 -12.64794 -12.53504 -12.25584 -12.05217 -11.69218 -11.26583 -11.22479 -11.18937 -11.06392 -10.99297 -10.81971 -10.49416 -10.34912 -10.14089 -10.03960 -9.78117 -9.59102 -9.48713 -8.96638 -8.85172 -7.24078 -5.78257 -3.13714 2.04547 2.69809 3.23994 3.34711 3.36982 3.43195 4.56153 4.57087 4.67940 4.75380 4.81727 4.92945 4.95384 5.11861 5.12280 5.16592 5.26583 5.44201 5.47958 5.53127 5.53992 5.56712 5.62063 5.62551 5.76152 5.79559 5.82588 5.98552 6.04440 6.08820 6.14443 6.18541 6.26142 6.40990 6.43961 6.49338 6.55087 6.55622 6.66136 6.79805 7.57157 7.98263 8.28689 8.40821 9.19946 9.92170 10.12204 11.40292 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.004322 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.501731 B = 6476.432917 C = 8059.792068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.079 4.079 4 C -0.138 4.138 5 C 0.513 3.487 6 O -0.546 6.546 7 N -0.722 5.722 8 C 0.154 3.846 9 H 0.088 0.912 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.104 4.104 15 H 0.074 0.926 16 C 0.163 3.837 17 N -0.755 5.755 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.216 6.032 0.646 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.116 4.116 4 C -0.178 4.178 5 C 0.300 3.700 6 O -0.424 6.424 7 N -0.373 5.373 8 C 0.049 3.951 9 H 0.106 0.894 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.147 4.147 14 C -0.124 4.124 15 H 0.092 0.908 16 C 0.036 3.964 17 N -0.400 5.400 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.255 6.450 -0.128 21.257 hybrid contribution 0.545 0.130 1.548 1.646 sum -19.710 6.580 1.420 20.827 Atomic orbital electron populations 1.23857 0.95987 1.01770 1.01761 1.23021 0.96091 0.98550 0.99345 1.20495 0.97739 0.95196 0.98213 1.21636 0.99136 0.96050 1.00991 1.20670 0.79638 0.88778 0.80908 1.90686 1.65856 1.48447 1.37380 1.46130 1.40460 1.20021 1.30649 1.20954 0.90270 0.82962 1.00881 0.89356 1.21890 0.98924 0.95058 1.00556 1.21482 0.96192 0.96602 1.01015 1.21601 0.95841 0.99073 0.99422 1.21528 0.98653 0.93231 1.01327 1.21654 0.93723 0.96943 1.00038 0.90796 1.20641 0.87127 0.94441 0.94202 1.42720 1.21318 1.48650 1.27349 1.19058 0.98079 1.12922 1.07249 0.89317 1.24673 0.96911 0.98937 0.98666 1.69706 1.11842 1.36377 1.40340 0.86554 0.77340 0.79883 0.84765 1.21130 1.21742 1.20307 0.88580 0.88626 0.87212 0.90881 0.90106 0.88490 0.88965 0.76343 0.91747 0.91996 0.91787 0.92127 0.92038 0.92122 0.90898 0.91609 0.95583 0.95481 0.80660 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 14.32 29.02 0.42 -1.12 16 2 C -0.15 -1.29 9.52 -36.03 -0.34 -1.63 16 3 C -0.08 -0.77 4.95 -27.88 -0.14 -0.91 16 4 C -0.14 -1.30 5.68 -27.88 -0.16 -1.46 16 5 C 0.51 6.52 7.79 -10.99 -0.09 6.43 16 6 O -0.55 -8.85 15.64 5.55 0.09 -8.76 16 7 N -0.72 -8.62 4.30 -53.81 -0.23 -8.85 16 8 C 0.15 2.02 1.90 -67.94 -0.13 1.89 16 9 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 10 C -0.13 -1.44 5.49 -26.73 -0.15 -1.59 16 11 C -0.11 -1.23 5.92 -26.73 -0.16 -1.39 16 12 C -0.12 -1.40 5.92 -26.74 -0.16 -1.55 16 13 C -0.11 -1.55 5.08 -26.71 -0.14 -1.68 16 14 C -0.10 -1.51 1.80 -90.60 -0.16 -1.67 16 15 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 16 C 0.16 3.06 5.56 -4.04 -0.02 3.04 16 17 N -0.75 -17.48 5.13 -59.91 -0.31 -17.79 16 18 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 19 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 22 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 H 0.10 0.64 8.06 -52.49 -0.42 0.21 16 27 H 0.10 0.72 7.84 -52.48 -0.41 0.31 16 28 H 0.11 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 4.15 8.39 -40.82 -0.34 3.81 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.03 0.51 7.30 -51.93 -0.38 0.13 16 44 H 0.36 8.11 4.72 -40.82 -0.19 7.91 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -32.58 358.35 -8.47 -41.06 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.00 Total: 9.00 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.48 Total: -8.64 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.24 Total: -55.19 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.58 -8.47 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569157948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.268 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds