Wall clock time and date at job start Fri Apr 10 2020 17:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00265 * 2 1 4 4 C 1.52996 * 109.47491 * 124.99773 * 3 2 1 5 5 C 1.50702 * 109.47159 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 10 10 C 1.52997 * 109.47288 * 275.00460 * 8 7 5 11 11 C 1.53000 * 109.47350 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46939 * 59.99752 * 11 10 8 13 13 C 1.52997 * 109.47302 * 300.00277 * 12 11 10 14 14 C 1.52995 * 109.47319 * 59.99629 * 13 12 11 15 15 H 1.09007 * 109.46796 * 59.99739 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 17 17 N 1.46503 * 109.47261 * 295.00326 * 16 14 13 18 18 C 1.36936 * 120.00013 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00096 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99810 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99893 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00217 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47213 * 90.00025 * 22 20 18 24 24 H 1.48504 * 109.47165 * 210.00176 * 22 20 18 25 25 H 1.48505 * 109.47339 * 330.00033 * 22 20 18 26 26 H 1.07998 * 119.99700 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99902 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00083 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46801 * 4.99812 * 3 2 1 30 30 H 1.09000 * 109.47461 * 245.00344 * 3 2 1 31 31 H 1.09004 * 109.47066 * 60.00201 * 4 3 2 32 32 H 1.08994 * 109.47405 * 300.00031 * 4 3 2 33 33 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 34 34 H 1.08993 * 109.47268 * 299.99834 * 10 8 7 35 35 H 1.09006 * 109.47495 * 60.00048 * 10 8 7 36 36 H 1.09001 * 109.47157 * 299.99986 * 11 10 8 37 37 H 1.09000 * 109.47626 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.46918 * 180.02562 * 12 11 10 39 39 H 1.08993 * 109.46833 * 60.00389 * 12 11 10 40 40 H 1.09001 * 109.46979 * 299.99879 * 13 12 11 41 41 H 1.09000 * 109.47470 * 180.02562 * 13 12 11 42 42 H 1.08994 * 109.47304 * 55.00229 * 16 14 13 43 43 H 1.09001 * 109.47098 * 175.00443 * 16 14 13 44 44 H 0.97001 * 119.99848 * 359.97438 * 17 16 14 45 45 H 0.97004 * 119.99582 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6379 1.1812 6 8 3.5705 3.4643 0.3208 7 7 4.7018 2.8891 2.1404 8 6 5.4304 4.1600 2.1435 9 1 4.7745 4.9557 1.7903 10 6 6.6457 4.0534 1.2202 11 6 7.4064 5.3810 1.2230 12 6 7.8726 5.6986 2.6452 13 6 6.6573 5.8052 3.5685 14 6 5.8967 4.4778 3.5657 15 1 6.5529 3.6823 3.9191 16 6 4.6817 4.5841 4.4895 17 7 5.1333 4.7692 5.8709 18 6 4.2162 4.8897 6.8806 19 1 3.1601 4.8478 6.6588 20 6 4.6441 5.0656 8.1894 21 7 3.7626 5.1819 9.1599 22 14 6.4708 5.1372 8.5732 23 1 6.9385 6.5444 8.4937 24 1 6.7100 4.6126 9.9418 25 1 7.2162 4.3115 7.5893 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5065 1.0921 32 1 2.4773 1.2357 2.1130 33 1 4.8764 2.2283 2.8288 34 1 7.3016 3.2578 1.5734 35 1 6.3136 3.8276 0.2069 36 1 6.7502 6.1764 0.8695 37 1 8.2725 5.3049 0.5656 38 1 8.4141 6.6446 2.6472 39 1 8.5287 4.9033 2.9986 40 1 6.0012 6.6006 3.2151 41 1 6.9894 6.0320 4.5816 42 1 4.0709 5.4356 4.1898 43 1 4.0911 3.6707 4.4196 44 1 6.0818 4.8057 6.0703 45 1 4.0617 5.3044 10.0745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569157949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:29 Heat of formation + Delta-G solvation = -57.264699 kcal Electronic energy + Delta-G solvation = -22293.792805 eV Core-core repulsion = 19116.786984 eV Total energy + Delta-G solvation = -3177.005820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23705 -39.48923 -36.61192 -36.25096 -35.16752 -33.84795 -31.93539 -31.61329 -30.17796 -27.15502 -25.44170 -24.44026 -23.03409 -22.10788 -21.37896 -20.69157 -20.64746 -19.72607 -17.87957 -17.36856 -16.76079 -16.57048 -16.10226 -15.76490 -15.54742 -15.34395 -14.83774 -14.81671 -14.64138 -14.60370 -14.04588 -13.79563 -13.68757 -13.44560 -13.06132 -12.98975 -12.78729 -12.67500 -12.19101 -12.13497 -11.99134 -11.94551 -11.88494 -11.84826 -11.52413 -11.35676 -11.16649 -10.99720 -10.76173 -10.20004 -9.96408 -9.30263 -8.03383 -5.37399 1.37246 1.40270 1.41883 1.49183 1.69528 2.28464 2.48203 3.28006 3.41783 3.72330 3.78401 3.86029 3.97997 4.00814 4.19915 4.24179 4.30060 4.37335 4.44528 4.45505 4.47269 4.53644 4.55869 4.71639 4.84305 4.86645 4.95773 5.03166 5.08113 5.09390 5.16971 5.22142 5.23572 5.28038 5.30065 5.39393 5.50910 5.62342 5.74197 5.76401 5.92221 6.20219 6.60529 7.07239 7.30589 7.82150 8.03440 9.18383 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.004497 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.456216 B = 6224.707715 C = 7966.745425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.077 4.077 4 C -0.130 4.130 5 C 0.509 3.491 6 O -0.586 6.586 7 N -0.718 5.718 8 C 0.159 3.841 9 H 0.062 0.938 10 C -0.117 4.117 11 C -0.113 4.113 12 C -0.114 4.114 13 C -0.111 4.111 14 C -0.089 4.089 15 H 0.089 0.911 16 C 0.162 3.838 17 N -0.752 5.752 18 C -0.237 4.237 19 H 0.050 0.950 20 C -0.063 4.063 21 N -0.985 5.985 22 Si 0.956 3.044 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.245 1.245 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.412 0.588 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.007 0.993 43 H 0.028 0.972 44 H 0.368 0.632 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -9.462 -19.955 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.175 4.175 3 C -0.115 4.115 4 C -0.170 4.170 5 C 0.297 3.703 6 O -0.467 6.467 7 N -0.368 5.368 8 C 0.054 3.946 9 H 0.080 0.920 10 C -0.155 4.155 11 C -0.151 4.151 12 C -0.151 4.151 13 C -0.150 4.150 14 C -0.109 4.109 15 H 0.107 0.893 16 C 0.036 3.964 17 N -0.398 5.398 18 C -0.368 4.368 19 H 0.068 0.932 20 C -0.255 4.255 21 N -0.635 5.635 22 Si 0.783 3.217 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.170 1.170 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.146 0.854 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.122 0.878 33 H 0.249 0.751 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.046 0.954 44 H 0.202 0.798 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.409 -8.871 -20.482 23.223 hybrid contribution 0.335 0.160 1.194 1.250 sum 6.744 -8.711 -19.288 22.213 Atomic orbital electron populations 1.24045 0.96243 1.02375 1.00887 1.23029 0.96139 0.98253 1.00081 1.20434 0.97566 0.95606 0.97854 1.21658 0.99239 0.94636 1.01471 1.21273 0.79014 0.89600 0.80388 1.90668 1.67125 1.49750 1.39132 1.46115 1.40639 1.19768 1.30320 1.20812 0.93260 0.85975 0.94564 0.91993 1.21813 0.95898 0.99045 0.98775 1.21484 1.00092 0.96409 0.97072 1.21551 0.96620 1.02580 0.94395 1.21521 0.97418 0.95895 1.00123 1.21505 0.96539 0.99578 0.93250 0.89316 1.20750 0.95267 0.97509 0.82884 1.42646 1.04517 1.89455 1.03230 1.19005 0.89629 1.40736 0.87476 0.93174 1.25540 1.02396 1.02266 0.95252 1.69901 1.34930 1.58566 1.00151 0.85392 0.80438 0.78455 0.77416 1.20471 1.22197 1.16969 0.89243 0.86997 0.85383 0.92867 0.91015 0.85868 0.87826 0.75143 0.90348 0.92509 0.92605 0.89989 0.90840 0.90896 0.92632 0.92455 0.97517 0.95358 0.79808 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 14.32 67.78 0.97 -2.13 16 2 C -0.16 -2.43 9.52 25.65 0.24 -2.18 16 3 C -0.08 -1.47 4.95 29.85 0.15 -1.32 16 4 C -0.13 -2.27 5.68 29.85 0.17 -2.10 16 5 C 0.51 12.62 7.79 87.66 0.68 13.31 16 6 O -0.59 -19.30 15.64 -3.04 -0.05 -19.34 16 7 N -0.72 -16.26 4.31 -442.54 -1.91 -18.17 16 8 C 0.16 3.99 1.90 44.99 0.09 4.08 16 9 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 10 C -0.12 -2.39 5.49 30.59 0.17 -2.23 16 11 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 12 C -0.11 -2.24 5.92 30.59 0.18 -2.05 16 13 C -0.11 -2.94 5.08 30.59 0.16 -2.79 16 14 C -0.09 -2.45 1.80 -10.80 -0.02 -2.47 16 15 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 16 C 0.16 6.09 5.57 86.38 0.48 6.57 16 17 N -0.75 -34.46 5.13 -343.46 -1.76 -36.22 16 18 C -0.24 -13.62 10.47 84.03 0.88 -12.74 16 19 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 21 N -0.99 -63.32 13.97 21.65 0.30 -63.02 16 22 Si 0.96 44.59 27.74 68.60 1.90 46.49 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.25 -10.04 6.52 99.48 0.65 -9.39 16 26 H 0.09 1.50 7.84 -2.91 -0.02 1.48 16 27 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.05 1.23 7.75 -2.38 -0.02 1.21 16 30 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 31 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.41 7.67 8.40 -92.71 -0.78 6.89 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.69 7.18 -2.39 -0.02 1.67 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.03 1.06 7.31 -2.39 -0.02 1.05 16 44 H 0.37 15.77 4.71 -92.71 -0.44 15.33 16 45 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -72.56 358.35 2.96 -69.59 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.32 Total: 31.90 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 4.79 Total: -11.22 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -3.37 Total: -117.41 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Total: -72.56 2.96 -69.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569157949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.329 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds