Wall clock time and date at job start Fri Apr 10 2020 17:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50698 * 120.00008 * 2 1 4 4 C 1.31005 * 119.99904 * 180.02562 * 2 1 3 5 5 C 1.50700 * 119.99646 * 185.96620 * 4 2 1 6 6 C 1.50704 * 120.00083 * 5.97237 * 4 2 1 7 7 C 1.50694 * 109.47085 * 94.47212 * 6 4 2 8 8 O 1.21277 * 120.00536 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99630 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00037 * 180.02562 * 9 7 6 11 11 C 1.53781 * 113.61404 * 254.13945 * 10 9 7 12 12 C 1.54047 * 86.98713 * 270.83455 * 11 10 9 13 13 C 1.52994 * 113.62307 * 220.01859 * 12 11 10 14 14 N 1.46498 * 109.47785 * 272.49631 * 13 12 11 15 15 C 1.36926 * 120.00684 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00524 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99747 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00494 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47542 * 89.99691 * 19 17 15 21 21 H 1.48501 * 109.47449 * 210.00175 * 19 17 15 22 22 H 1.48506 * 109.46622 * 330.00012 * 19 17 15 23 23 C 1.53778 * 87.07866 * 334.56910 * 12 11 10 24 24 H 1.08996 * 109.46807 * 236.21156 * 1 2 3 25 25 H 1.08997 * 109.46994 * 356.21336 * 1 2 3 26 26 H 1.08998 * 109.46791 * 116.21808 * 1 2 3 27 27 H 1.08998 * 109.47264 * 272.78574 * 3 2 1 28 28 H 1.08998 * 109.47245 * 32.78854 * 3 2 1 29 29 H 1.09002 * 109.46742 * 152.78284 * 3 2 1 30 30 H 1.09007 * 109.46894 * 184.67976 * 5 4 2 31 31 H 1.08994 * 109.47601 * 304.67673 * 5 4 2 32 32 H 1.09001 * 109.47005 * 64.68642 * 5 4 2 33 33 H 1.09000 * 109.46687 * 334.46960 * 6 4 2 34 34 H 1.08998 * 109.46483 * 214.47753 * 6 4 2 35 35 H 0.96998 * 120.00152 * 0.02562 * 9 7 6 36 36 H 1.08997 * 112.85145 * 25.33635 * 10 9 7 37 37 H 1.08997 * 113.61541 * 25.43206 * 11 10 9 38 38 H 1.09005 * 113.61348 * 156.33332 * 11 10 9 39 39 H 1.09002 * 113.68687 * 89.12608 * 12 11 10 40 40 H 1.08997 * 109.47192 * 32.49958 * 13 12 11 41 41 H 1.09007 * 109.47478 * 152.49461 * 13 12 11 42 42 H 0.97004 * 119.99383 * 0.02562 * 14 13 12 43 43 H 0.97004 * 120.00189 * 180.02562 * 18 17 15 44 44 H 1.08998 * 113.61433 * 270.87992 * 23 12 11 45 45 H 1.08998 * 113.61500 * 139.97260 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 3.6629 -1.1381 0.1351 6 6 1.4147 -2.4361 -0.1369 7 6 1.3889 -2.8511 -1.5853 8 8 1.9250 -2.1586 -2.4243 9 7 0.7709 -3.9925 -1.9483 10 6 0.7462 -4.3964 -3.3563 11 6 -0.6220 -4.1988 -4.0299 12 6 -0.9683 -5.6244 -3.5599 13 6 -1.7447 -6.4398 -4.5957 14 7 -3.1797 -6.1910 -4.4374 15 6 -4.0779 -6.8159 -5.2606 16 1 -3.7285 -7.4926 -6.0264 17 6 -5.4376 -6.5798 -5.1110 18 7 -5.8634 -5.7547 -4.1781 19 14 -6.6630 -7.4328 -6.2335 20 1 -7.0734 -8.7249 -5.6275 21 1 -7.8570 -6.5679 -6.4112 22 1 -6.0326 -7.6837 -7.5545 23 6 0.5433 -5.9070 -3.5605 24 1 -0.3633 -0.5715 0.8541 25 1 -0.3633 1.0254 0.0679 26 1 -0.3633 -0.4540 -0.9219 27 1 2.3990 1.6447 -1.0264 28 1 1.6940 2.0517 0.5565 29 1 3.2336 1.1627 0.4700 30 1 4.0348 -2.1574 0.0308 31 1 4.0995 -0.5108 -0.6420 32 1 3.9401 -0.7488 1.1148 33 1 0.3937 -2.3081 0.2227 34 1 1.9138 -3.2050 0.4527 35 1 0.3424 -4.5466 -1.2773 36 1 1.5781 -3.9863 -3.9289 37 1 -1.2304 -3.4239 -3.5637 38 1 -0.5646 -4.0984 -5.1138 39 1 -1.4189 -5.6611 -2.5681 40 1 -1.4332 -6.1451 -5.5978 41 1 -1.5416 -7.5008 -4.4495 42 1 -3.4935 -5.5830 -3.7499 43 1 -6.8135 -5.5899 -4.0732 44 1 0.9187 -6.2727 -4.5162 45 1 0.8750 -6.5102 -2.7154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674569778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:44 Heat of formation + Delta-G solvation = -30.403654 kcal Electronic energy + Delta-G solvation = -21658.020954 eV Core-core repulsion = 18482.179916 eV Total energy + Delta-G solvation = -3175.841038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31034 -39.72406 -37.88159 -36.32110 -34.40698 -32.86050 -31.88227 -30.43027 -28.55867 -27.41030 -26.63257 -25.33170 -24.66452 -22.95530 -21.87264 -20.30133 -19.06787 -18.16950 -17.84791 -16.91999 -16.65643 -16.64214 -15.85243 -15.73465 -15.44878 -15.18233 -15.10167 -14.98307 -14.43760 -14.33936 -13.74494 -13.60142 -13.40791 -13.23015 -13.13114 -13.01370 -12.96288 -12.82323 -12.69193 -12.60619 -12.19375 -12.14767 -11.93087 -11.75150 -11.60318 -11.35376 -11.14722 -10.93219 -10.85219 -9.99982 -9.34389 -8.98364 -7.95484 -5.23777 1.14681 1.46574 1.48418 1.56856 1.66612 2.32866 2.55765 3.37413 3.59597 3.60388 3.74981 3.93950 3.94401 3.98400 4.09585 4.22007 4.33232 4.42918 4.54814 4.57178 4.64974 4.69908 4.76663 4.82780 4.84246 4.87548 4.92006 4.92898 4.98526 5.00914 5.03213 5.12000 5.12733 5.15731 5.21301 5.27988 5.38227 5.49216 5.70205 5.76864 6.10677 6.27418 6.60353 7.30333 7.33261 8.11143 8.33691 9.28169 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026547 B = 0.002894 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.490272 B = 9672.326004 C =10399.386248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C -0.116 4.116 4 C -0.133 4.133 5 C -0.106 4.106 6 C -0.103 4.103 7 C 0.516 3.484 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.127 3.873 11 C -0.144 4.144 12 C -0.110 4.110 13 C 0.159 3.841 14 N -0.745 5.745 15 C -0.246 4.246 16 H 0.074 0.926 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.974 3.026 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.270 1.270 23 C -0.115 4.115 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.018 0.982 41 H 0.023 0.977 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.104 0.896 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.448 7.659 12.206 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C -0.172 4.172 4 C -0.134 4.134 5 C -0.162 4.162 6 C -0.142 4.142 7 C 0.304 3.696 8 O -0.458 6.458 9 N -0.356 5.356 10 C 0.021 3.979 11 C -0.183 4.183 12 C -0.129 4.129 13 C 0.033 3.967 14 N -0.388 5.388 15 C -0.378 4.378 16 H 0.092 0.908 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.803 3.197 20 H -0.212 1.212 21 H -0.222 1.222 22 H -0.195 1.195 23 C -0.154 4.154 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.122 0.878 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.806 8.029 11.459 24.250 hybrid contribution -1.523 -0.329 -0.360 1.599 sum 18.284 7.701 11.100 22.733 Atomic orbital electron populations 1.20852 0.92304 1.02944 1.01443 1.21651 0.95942 0.95444 1.00867 1.20866 1.00260 0.94300 1.01782 1.21014 0.96184 0.93175 1.02999 1.20720 0.91492 1.02234 1.01802 1.20767 1.03774 0.97732 0.91944 1.21125 0.76749 0.79969 0.91764 1.90677 1.46868 1.53750 1.54460 1.45683 1.56767 1.24437 1.08698 1.21711 0.97207 0.96380 0.82620 1.23458 0.97134 0.96983 1.00704 1.22722 0.95898 0.95297 0.98939 1.20829 0.82999 0.96692 0.96158 1.42583 1.01630 1.54129 1.40442 1.19659 0.88248 1.19398 1.10483 0.90760 1.25580 0.98881 1.01414 1.01097 1.69815 1.13867 1.41305 1.37091 0.85135 0.78445 0.77464 0.78701 1.21197 1.22202 1.19533 1.23206 0.93618 0.94269 1.04275 0.90124 0.91364 0.93665 0.92230 0.91088 0.90762 0.92290 0.92711 0.90078 0.86920 0.85782 0.74919 0.89254 0.93248 0.90031 0.89469 0.96391 0.95954 0.79540 0.94021 0.87765 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.65 71.24 0.62 -1.56 16 2 C -0.14 -2.68 6.04 -16.49 -0.10 -2.78 16 3 C -0.12 -1.87 9.46 71.24 0.67 -1.20 16 4 C -0.13 -2.54 4.54 -16.49 -0.07 -2.61 16 5 C -0.11 -1.74 8.63 71.24 0.61 -1.12 16 6 C -0.10 -1.73 5.44 29.10 0.16 -1.57 16 7 C 0.52 12.38 7.82 87.65 0.69 13.06 16 8 O -0.58 -19.00 15.65 -3.02 -0.05 -19.04 16 9 N -0.70 -14.93 5.26 -440.05 -2.32 -17.24 16 10 C 0.13 3.11 4.30 45.52 0.20 3.31 16 11 C -0.14 -4.37 7.45 31.21 0.23 -4.14 16 12 C -0.11 -3.30 3.64 -10.18 -0.04 -3.34 16 13 C 0.16 6.28 6.10 86.38 0.53 6.81 16 14 N -0.75 -38.35 5.60 -343.47 -1.92 -40.27 16 15 C -0.25 -13.96 9.99 84.04 0.84 -13.12 16 16 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 18 N -0.97 -59.96 13.06 21.65 0.28 -59.67 16 19 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C -0.12 -2.52 7.38 31.12 0.23 -2.29 16 24 H 0.08 1.21 7.42 -2.39 -0.02 1.19 16 25 H 0.07 1.12 7.96 -2.39 -0.02 1.10 16 26 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 0.96 8.07 -2.39 -0.02 0.94 16 29 H 0.07 1.02 6.41 -2.39 -0.02 1.01 16 30 H 0.06 0.92 8.01 -2.38 -0.02 0.90 16 31 H 0.05 1.01 7.73 -2.39 -0.02 0.99 16 32 H 0.08 1.01 7.83 -2.39 -0.02 0.99 16 33 H 0.11 1.63 6.21 -2.39 -0.01 1.61 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.41 6.60 8.70 -92.71 -0.81 5.79 16 36 H 0.09 2.40 7.50 -2.39 -0.02 2.39 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 2.58 7.90 -2.38 -0.02 2.56 16 39 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.02 0.72 7.85 -2.39 -0.02 0.71 16 41 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.37 20.38 7.67 -92.71 -0.71 19.67 16 43 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -72.02 365.83 2.51 -69.51 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.54 Total: 32.73 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 5.03 Total: -14.60 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -3.96 Total: -117.19 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -72.02 2.51 -69.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674569778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.109 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds