Wall clock time and date at job start Fri Apr 10 2020 17:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47167 * 2 1 4 4 C 1.32994 * 119.99637 * 94.99890 * 3 2 1 5 5 C 1.47103 * 119.99665 * 172.01871 * 4 3 2 6 6 O 1.21609 * 120.00123 * 353.62575 * 5 4 3 7 7 N 1.34780 * 120.00023 * 173.63304 * 5 4 3 8 8 C 1.46500 * 119.99935 * 359.97438 * 7 5 4 9 9 C 1.46497 * 120.00117 * 179.97438 * 7 5 4 10 10 C 1.53784 * 113.61264 * 239.99945 * 9 7 5 11 11 C 1.53777 * 87.07900 * 220.01685 * 10 9 7 12 12 N 1.46511 * 113.61249 * 139.98081 * 11 10 9 13 13 C 1.36936 * 119.99775 * 154.99841 * 12 11 10 14 14 H 1.07995 * 120.00405 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99681 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99858 * 180.02562 * 15 13 12 18 18 H 1.48510 * 109.46940 * 60.00423 * 17 15 13 19 19 H 1.48501 * 109.47012 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47170 * 300.00333 * 17 15 13 21 21 C 1.53779 * 87.08466 * 25.43537 * 11 10 9 22 22 C 1.50698 * 120.00030 * 275.00247 * 3 2 1 23 23 C 1.53002 * 109.46934 * 272.79125 * 22 3 2 24 24 H 1.08992 * 109.47032 * 299.99829 * 1 2 3 25 25 H 1.09003 * 109.46632 * 60.00074 * 1 2 3 26 26 H 1.09001 * 109.47294 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47160 * 239.99907 * 2 1 3 28 28 H 1.08995 * 109.46927 * 119.99873 * 2 1 3 29 29 H 1.07996 * 120.00340 * 352.01165 * 4 3 2 30 30 H 1.09000 * 109.47310 * 269.99984 * 8 7 5 31 31 H 1.09006 * 109.47107 * 29.99783 * 8 7 5 32 32 H 1.08996 * 109.47689 * 150.00007 * 8 7 5 33 33 H 1.09001 * 112.90829 * 11.24415 * 9 7 5 34 34 H 1.09004 * 113.61591 * 105.46967 * 10 9 7 35 35 H 1.08998 * 113.61522 * 334.56443 * 10 9 7 36 36 H 1.09000 * 113.61681 * 270.88248 * 11 10 9 37 37 H 0.96998 * 120.00094 * 334.99841 * 12 11 10 38 38 H 0.96999 * 119.99998 * 179.97438 * 16 15 13 39 39 H 1.09000 * 113.61580 * 89.10885 * 21 11 10 40 40 H 1.09004 * 113.61531 * 220.02124 * 21 11 10 41 41 H 1.08996 * 109.47580 * 32.79283 * 22 3 2 42 42 H 1.08996 * 109.47101 * 152.79482 * 22 3 2 43 43 H 1.08994 * 109.47478 * 179.97438 * 23 22 3 44 44 H 1.09005 * 109.47208 * 300.00403 * 23 22 3 45 45 H 1.09008 * 109.46878 * 59.99907 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3486 2.0142 1.1474 5 6 3.0021 3.3321 1.1382 6 8 3.3579 3.8270 0.0859 7 7 3.2066 3.9911 2.2960 8 6 2.7775 3.3951 3.5636 9 6 3.8578 5.3033 2.2868 10 6 5.1628 5.3490 3.0992 11 6 4.7205 6.7400 3.5831 12 7 5.0052 6.9867 4.9990 13 6 5.1587 8.2695 5.4530 14 1 5.0695 9.0993 4.7676 15 6 5.4290 8.5032 6.7944 16 7 5.5372 7.4919 7.6298 17 14 5.6377 10.2530 7.4140 18 1 4.3915 11.0200 7.1602 19 1 5.9168 10.2317 8.8724 20 1 6.7698 10.8985 6.7021 21 6 3.2754 6.2873 3.3153 22 6 2.1763 2.1692 -1.3001 23 6 3.5550 1.8876 -1.9007 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1257 1.5287 2.0859 30 1 1.7544 3.7016 3.7814 31 1 2.8231 2.3086 3.4881 32 1 3.4358 3.7316 4.3646 33 1 3.9520 5.7233 1.2854 34 1 6.0610 5.3667 2.4819 35 1 5.2087 4.6044 3.8939 36 1 5.0504 7.5528 2.9361 37 1 5.0849 6.2415 5.6147 38 1 5.7264 7.6553 8.5671 39 1 2.8054 5.7991 4.1690 40 1 2.6500 7.0624 2.8723 41 1 1.4034 1.8417 -1.9954 42 1 2.0711 3.2385 -1.1173 43 1 3.6590 2.4285 -2.8412 44 1 4.3280 2.2151 -1.2054 45 1 3.6602 0.8181 -2.0834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677389846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:04 Heat of formation + Delta-G solvation = 8.140598 kcal Electronic energy + Delta-G solvation = -22094.860826 eV Core-core repulsion = 18920.691192 eV Total energy + Delta-G solvation = -3174.169634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23306 -38.40734 -36.44384 -34.73763 -33.10212 -32.04845 -30.36253 -29.66098 -26.91425 -25.39267 -25.04527 -24.06973 -23.44467 -22.31356 -19.94634 -18.81570 -18.01908 -17.27370 -17.07223 -16.04826 -15.43273 -15.00934 -14.84937 -14.42214 -14.27460 -13.98465 -13.63778 -13.20991 -13.04161 -12.93901 -12.83120 -12.68384 -12.23105 -12.06471 -11.91601 -11.87527 -11.74083 -11.49972 -11.23095 -11.00639 -10.88598 -10.74401 -10.54621 -10.42387 -10.24364 -9.96146 -9.61512 -9.33354 -9.16763 -8.89031 -8.28295 -6.98743 -5.80250 -3.09000 1.31163 3.21189 3.34931 3.42978 3.47441 3.48350 4.43668 4.55112 4.58204 4.85772 4.94708 4.99384 5.14699 5.20610 5.22532 5.24945 5.37437 5.42851 5.46159 5.47229 5.55157 5.57300 5.61502 5.63049 5.80549 5.83526 5.87796 5.87969 5.98782 6.10207 6.17385 6.28878 6.31522 6.35935 6.40514 6.48785 6.57362 6.60709 6.86662 7.08140 7.65040 7.68165 8.36813 8.38563 9.49568 10.06501 10.41288 11.42145 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039506 B = 0.002984 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.584880 B = 9380.988613 C = 9759.137280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.029 4.029 4 C -0.228 4.228 5 C 0.542 3.458 6 O -0.542 6.542 7 N -0.596 5.596 8 C 0.076 3.924 9 C 0.118 3.882 10 C -0.163 4.163 11 C 0.169 3.831 12 N -0.710 5.710 13 C -0.244 4.244 14 H 0.071 0.929 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.174 4.174 22 C -0.104 4.104 23 C -0.130 4.130 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.926 -15.800 -14.701 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.031 4.031 4 C -0.249 4.249 5 C 0.333 3.667 6 O -0.423 6.423 7 N -0.326 5.326 8 C -0.067 4.067 9 C 0.014 3.986 10 C -0.203 4.203 11 C 0.056 3.944 12 N -0.348 5.348 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.216 4.216 22 C -0.141 4.141 23 C -0.188 4.188 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.694 -15.323 -15.142 23.231 hybrid contribution 0.032 0.566 0.914 1.075 sum -8.662 -14.757 -14.229 22.254 Atomic orbital electron populations 1.21724 0.94337 1.01934 1.02445 1.20748 0.96576 0.92855 1.03183 1.22529 0.90718 0.94565 0.95265 1.22545 1.06694 0.96871 0.98753 1.18567 0.79378 0.85301 0.83405 1.90683 1.52146 1.69379 1.30043 1.47762 1.58924 1.19520 1.06442 1.21800 1.00437 0.98072 0.86408 1.22560 0.93973 0.82092 0.99953 1.23920 0.96642 1.00360 0.99373 1.21348 0.91805 0.93460 0.87738 1.42351 1.83697 1.06026 1.02708 1.19272 1.40863 0.84784 0.92600 0.91062 1.24760 1.02528 0.97362 0.96210 1.69645 1.55673 1.29253 1.03587 0.86255 0.77969 0.84232 0.77660 1.21222 1.21689 1.21198 1.24314 1.01563 0.97893 0.97870 1.20987 0.97679 1.02570 0.92843 1.21519 0.96860 0.99769 1.00623 0.92346 0.92392 0.92224 0.90460 0.90791 0.85586 0.92629 0.91273 0.90224 0.86907 0.91849 0.90162 0.90315 0.78126 0.93406 0.89935 0.92249 0.92470 0.87823 0.92831 0.91714 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.90 37.16 0.37 -0.59 16 2 C -0.10 -0.71 6.11 -27.88 -0.17 -0.88 16 3 C -0.03 -0.29 4.61 -101.17 -0.47 -0.76 16 4 C -0.23 -2.56 8.82 -37.81 -0.33 -2.89 16 5 C 0.54 7.79 7.46 -12.66 -0.09 7.70 16 6 O -0.54 -8.97 11.17 5.27 0.06 -8.91 16 7 N -0.60 -8.47 3.08 -174.39 -0.54 -9.01 16 8 C 0.08 0.89 8.80 59.85 0.53 1.42 16 9 C 0.12 1.87 4.20 -67.12 -0.28 1.59 16 10 C -0.16 -2.77 7.37 -25.92 -0.19 -2.97 16 11 C 0.17 3.35 4.48 -67.12 -0.30 3.05 16 12 N -0.71 -17.58 5.40 -52.64 -0.28 -17.87 16 13 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 17 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.17 -3.03 7.30 -25.92 -0.19 -3.22 16 22 C -0.10 -1.14 5.32 -27.88 -0.15 -1.29 16 23 C -0.13 -1.42 9.45 37.16 0.35 -1.07 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 29 H 0.13 1.16 6.17 -52.49 -0.32 0.83 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 6.02 -51.93 -0.31 0.33 16 32 H 0.08 1.02 6.34 -51.93 -0.33 0.69 16 33 H 0.11 1.87 7.23 -51.93 -0.38 1.49 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.38 6.90 -51.93 -0.36 1.02 16 36 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 37 H 0.38 10.03 7.92 -40.82 -0.32 9.71 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.08 1.47 6.72 -51.93 -0.35 1.12 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 1.40 5.57 -51.93 -0.29 1.11 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.85 6.91 -51.93 -0.36 0.49 16 45 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -30.71 356.35 -8.50 -39.21 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.63 Total: 8.36 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.18 Total: -7.23 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.10 Total: -54.02 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.06 Total: -8.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.71 -8.50 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677389846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.347 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds