Wall clock time and date at job start Fri Apr 10 2020 17:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.53002 * 109.47173 * 239.99982 * 2 1 3 5 5 C 1.53003 * 109.47615 * 119.99902 * 2 1 3 6 6 C 1.50700 * 109.46669 * 59.99622 * 5 2 1 7 7 O 1.21275 * 120.00481 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00019 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00525 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47016 * 179.97438 * 9 8 6 11 11 C 1.29458 * 117.69367 * 95.00315 * 10 9 8 12 12 C 1.50320 * 123.65602 * 181.13583 * 11 10 9 13 13 N 1.47115 * 109.10396 * 348.53877 * 12 11 10 14 14 C 1.36936 * 121.51016 * 223.16054 * 13 12 11 15 15 H 1.08000 * 120.00184 * 156.31047 * 14 13 12 16 16 C 1.38809 * 120.00164 * 336.30464 * 14 13 12 17 17 N 1.31619 * 119.99792 * 344.28579 * 16 14 13 18 18 Si 1.86798 * 120.00198 * 164.29147 * 16 14 13 19 19 H 1.48497 * 109.47521 * 94.57233 * 18 16 14 20 20 H 1.48499 * 109.47129 * 214.57944 * 18 16 14 21 21 H 1.48502 * 109.46919 * 334.57033 * 18 16 14 22 22 C 1.47343 * 117.11206 * 43.34374 * 13 12 11 23 23 C 1.49968 * 117.69700 * 274.97718 * 10 9 8 24 24 H 1.09003 * 109.47098 * 300.00230 * 1 2 3 25 25 H 1.08994 * 109.47559 * 59.99874 * 1 2 3 26 26 H 1.09006 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47292 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46888 * 299.99742 * 3 2 1 29 29 H 1.08997 * 109.47348 * 60.00339 * 3 2 1 30 30 H 1.09005 * 109.47219 * 299.99926 * 4 2 1 31 31 H 1.09003 * 109.47000 * 59.99667 * 4 2 1 32 32 H 1.09002 * 109.47326 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46953 * 300.00555 * 5 2 1 34 34 H 1.08992 * 109.47317 * 179.97438 * 5 2 1 35 35 H 0.97004 * 119.99510 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46574 * 60.00163 * 9 8 6 37 37 H 1.08993 * 109.46830 * 300.00339 * 9 8 6 38 38 H 1.08005 * 118.16972 * 0.85690 * 11 10 9 39 39 H 1.08992 * 109.52154 * 108.64475 * 12 11 10 40 40 H 1.08998 * 109.52435 * 228.83966 * 12 11 10 41 41 H 0.97006 * 119.99832 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.77544 * 178.42646 * 22 13 12 43 43 H 1.09000 * 109.77364 * 57.62619 * 22 13 12 44 44 H 1.09002 * 109.31403 * 281.29267 * 23 10 9 45 45 H 1.08995 * 109.31485 * 40.72303 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5377 -2.1420 1.2492 7 8 0.8407 -2.5388 0.3395 8 7 1.8629 -2.9718 2.2603 9 6 1.3750 -4.3532 2.2601 10 6 1.8774 -5.0635 3.4906 11 6 1.0983 -5.1011 4.5238 12 6 1.4729 -5.7509 5.8265 13 7 2.6979 -6.5427 5.6348 14 6 2.8310 -7.7960 6.1702 15 1 3.5237 -8.4995 5.7323 16 6 2.0759 -8.1624 7.2758 17 7 1.4731 -7.2401 7.9958 18 14 1.9152 -9.9641 7.7417 19 1 2.9400 -10.3052 8.7609 20 1 0.5613 -10.2126 8.2987 21 1 2.1166 -10.8071 6.5359 22 6 3.7785 -5.9272 4.8447 23 6 3.2443 -5.6775 3.4318 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 2.4200 -2.6543 2.9881 36 1 1.7391 -4.8669 1.3704 37 1 0.2851 -4.3535 2.2594 38 1 0.1266 -4.6358 4.4469 39 1 1.6458 -4.9828 6.5802 40 1 0.6655 -6.4068 6.1519 41 1 0.9456 -7.4961 8.7687 42 1 4.6340 -6.6013 4.8018 43 1 4.0753 -4.9820 5.2992 44 1 3.1915 -6.6240 2.8938 45 1 3.9198 -5.0036 2.9049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677533253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:14 Heat of formation + Delta-G solvation = -16.351749 kcal Electronic energy + Delta-G solvation = -22168.418591 eV Core-core repulsion = 18993.186889 eV Total energy + Delta-G solvation = -3175.231702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16453 -37.98407 -36.62766 -34.83174 -32.92732 -31.00351 -29.81252 -28.79485 -27.33732 -27.26687 -26.47533 -24.04843 -22.75641 -21.19571 -20.66011 -19.10016 -17.71646 -17.12942 -15.98294 -15.69574 -15.51465 -15.05252 -14.54227 -14.49148 -14.38821 -13.88056 -13.73055 -13.49424 -13.13139 -12.82757 -12.43405 -12.24481 -12.21674 -12.05473 -11.88279 -11.59154 -11.49926 -11.22831 -11.18450 -10.95179 -10.87326 -10.77956 -10.74837 -10.40759 -10.33302 -9.85814 -9.66044 -9.48025 -8.90007 -8.70614 -8.07894 -6.78435 -5.83070 -3.21469 2.59168 2.68795 3.35933 3.43284 3.45736 3.57223 4.46908 4.51078 4.68376 4.71702 5.04818 5.18639 5.29556 5.34112 5.35646 5.38228 5.40473 5.48106 5.56085 5.62959 5.74299 5.78376 5.81350 5.92393 5.96853 5.98946 6.03955 6.11435 6.14258 6.30470 6.35841 6.38972 6.47314 6.64085 6.70942 6.83454 7.13383 7.22828 7.29707 7.62194 7.70093 7.79367 8.31940 8.34492 9.15979 9.78839 10.36906 11.27509 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044961 B = 0.002953 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.611760 B = 9478.383295 C = 9550.811375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.153 4.153 5 C -0.134 4.134 6 C 0.510 3.490 7 O -0.539 6.539 8 N -0.723 5.723 9 C 0.157 3.843 10 C -0.166 4.166 11 C -0.125 4.125 12 C 0.194 3.806 13 N -0.595 5.595 14 C -0.246 4.246 15 H 0.069 0.931 16 C -0.002 4.002 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.144 3.856 23 C -0.090 4.090 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 14.702 -13.042 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.210 4.210 5 C -0.174 4.174 6 C 0.297 3.703 7 O -0.417 6.417 8 N -0.373 5.373 9 C 0.035 3.965 10 C -0.167 4.167 11 C -0.145 4.145 12 C 0.069 3.931 13 N -0.318 5.318 14 C -0.375 4.375 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.017 3.983 23 C -0.129 4.129 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.692 14.345 -13.542 19.739 hybrid contribution 0.099 -0.668 0.732 0.996 sum 0.791 13.677 -12.810 18.756 Atomic orbital electron populations 1.22108 0.94133 1.04186 1.00639 1.20255 0.96386 0.94358 0.94130 1.21903 1.00820 0.95438 1.01789 1.22109 0.99896 1.02974 0.96063 1.21799 1.02328 0.92889 1.00385 1.20682 0.80283 0.87665 0.81689 1.90558 1.38146 1.77400 1.35595 1.46282 1.53510 1.12508 1.25048 1.20427 0.98277 0.80491 0.97343 1.20503 0.98175 1.03370 0.94654 1.23277 0.97399 0.96644 0.97226 1.19775 0.90493 0.93944 0.88926 1.44164 1.11282 1.15892 1.60509 1.19180 1.22764 0.88184 1.07386 0.91338 1.24983 1.01506 0.97761 0.95693 1.70009 1.36608 1.31105 1.17786 0.86241 0.77214 0.84910 0.78210 1.21484 1.21546 1.20464 1.20954 0.91528 0.96220 0.89605 1.20749 0.93027 0.99121 0.99988 0.93609 0.93248 0.89674 0.92731 0.92499 0.92712 0.89674 0.93253 0.93630 0.89051 0.89070 0.76518 0.91730 0.91788 0.88829 0.94125 0.88860 0.93601 0.92463 0.95961 0.91776 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.18 37.15 0.30 -1.30 16 2 C -0.05 -0.48 0.77 -154.51 -0.12 -0.60 16 3 C -0.14 -1.08 8.47 37.16 0.31 -0.76 16 4 C -0.15 -1.58 8.18 37.16 0.30 -1.28 16 5 C -0.13 -1.24 4.77 -27.88 -0.13 -1.37 16 6 C 0.51 6.34 7.24 -10.98 -0.08 6.26 16 7 O -0.54 -8.26 11.35 5.56 0.06 -8.19 16 8 N -0.72 -8.96 5.55 -61.48 -0.34 -9.30 16 9 C 0.16 2.30 5.66 -5.19 -0.03 2.27 16 10 C -0.17 -2.79 5.22 -100.99 -0.53 -3.32 16 11 C -0.12 -2.32 9.47 -35.78 -0.34 -2.66 16 12 C 0.19 4.50 5.25 -5.04 -0.03 4.47 16 13 N -0.60 -14.64 3.01 -173.59 -0.52 -15.16 16 14 C -0.25 -6.66 9.71 -15.06 -0.15 -6.81 16 15 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 16 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 17 N -0.91 -25.91 11.07 55.49 0.61 -25.29 16 18 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C 0.14 2.89 6.57 -3.53 -0.02 2.87 16 23 C -0.09 -1.53 5.95 -28.18 -0.17 -1.69 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.10 5.51 -51.93 -0.29 0.81 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.09 5.51 -51.93 -0.29 0.80 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 4.34 8.46 -40.82 -0.35 4.00 16 36 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.06 0.98 7.78 -51.93 -0.40 0.58 16 38 H 0.09 1.58 7.73 -52.48 -0.41 1.17 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 2.43 6.39 -51.93 -0.33 2.10 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -29.63 351.83 -8.61 -38.24 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.94 Total: 1.94 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.76 Total: -4.04 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.25 Total: -49.75 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.06 Total: -8.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.63 -8.61 -38.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677533253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.885 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds