Wall clock time and date at job start Fri Apr 10 2020 17:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.53002 * 109.47173 * 239.99982 * 2 1 3 5 5 C 1.53003 * 109.47615 * 119.99902 * 2 1 3 6 6 C 1.50700 * 109.46669 * 59.99622 * 5 2 1 7 7 O 1.21275 * 120.00481 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00019 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00525 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47016 * 179.97438 * 9 8 6 11 11 C 1.29458 * 117.69367 * 95.00315 * 10 9 8 12 12 C 1.50320 * 123.65602 * 181.13583 * 11 10 9 13 13 N 1.47115 * 109.10396 * 348.53877 * 12 11 10 14 14 C 1.36936 * 121.51016 * 223.16054 * 13 12 11 15 15 H 1.08000 * 120.00184 * 156.31047 * 14 13 12 16 16 C 1.38809 * 120.00164 * 336.30464 * 14 13 12 17 17 N 1.31619 * 119.99792 * 344.28579 * 16 14 13 18 18 Si 1.86798 * 120.00198 * 164.29147 * 16 14 13 19 19 H 1.48497 * 109.47521 * 94.57233 * 18 16 14 20 20 H 1.48499 * 109.47129 * 214.57944 * 18 16 14 21 21 H 1.48502 * 109.46919 * 334.57033 * 18 16 14 22 22 C 1.47343 * 117.11206 * 43.34374 * 13 12 11 23 23 C 1.49968 * 117.69700 * 274.97718 * 10 9 8 24 24 H 1.09003 * 109.47098 * 300.00230 * 1 2 3 25 25 H 1.08994 * 109.47559 * 59.99874 * 1 2 3 26 26 H 1.09006 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47292 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46888 * 299.99742 * 3 2 1 29 29 H 1.08997 * 109.47348 * 60.00339 * 3 2 1 30 30 H 1.09005 * 109.47219 * 299.99926 * 4 2 1 31 31 H 1.09003 * 109.47000 * 59.99667 * 4 2 1 32 32 H 1.09002 * 109.47326 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46953 * 300.00555 * 5 2 1 34 34 H 1.08992 * 109.47317 * 179.97438 * 5 2 1 35 35 H 0.97004 * 119.99510 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46574 * 60.00163 * 9 8 6 37 37 H 1.08993 * 109.46830 * 300.00339 * 9 8 6 38 38 H 1.08005 * 118.16972 * 0.85690 * 11 10 9 39 39 H 1.08992 * 109.52154 * 108.64475 * 12 11 10 40 40 H 1.08998 * 109.52435 * 228.83966 * 12 11 10 41 41 H 0.97006 * 119.99832 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.77544 * 178.42646 * 22 13 12 43 43 H 1.09000 * 109.77364 * 57.62619 * 22 13 12 44 44 H 1.09002 * 109.31403 * 281.29267 * 23 10 9 45 45 H 1.08995 * 109.31485 * 40.72303 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5377 -2.1420 1.2492 7 8 0.8407 -2.5388 0.3395 8 7 1.8629 -2.9718 2.2603 9 6 1.3750 -4.3532 2.2601 10 6 1.8774 -5.0635 3.4906 11 6 1.0983 -5.1011 4.5238 12 6 1.4729 -5.7509 5.8265 13 7 2.6979 -6.5427 5.6348 14 6 2.8310 -7.7960 6.1702 15 1 3.5237 -8.4995 5.7323 16 6 2.0759 -8.1624 7.2758 17 7 1.4731 -7.2401 7.9958 18 14 1.9152 -9.9641 7.7417 19 1 2.9400 -10.3052 8.7609 20 1 0.5613 -10.2126 8.2987 21 1 2.1166 -10.8071 6.5359 22 6 3.7785 -5.9272 4.8447 23 6 3.2443 -5.6775 3.4318 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 2.4200 -2.6543 2.9881 36 1 1.7391 -4.8669 1.3704 37 1 0.2851 -4.3535 2.2594 38 1 0.1266 -4.6358 4.4469 39 1 1.6458 -4.9828 6.5802 40 1 0.6655 -6.4068 6.1519 41 1 0.9456 -7.4961 8.7687 42 1 4.6340 -6.6013 4.8018 43 1 4.0753 -4.9820 5.2992 44 1 3.1915 -6.6240 2.8938 45 1 3.9198 -5.0036 2.9049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677533253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:13 Heat of formation + Delta-G solvation = -33.476586 kcal Electronic energy + Delta-G solvation = -22169.161179 eV Core-core repulsion = 18993.186889 eV Total energy + Delta-G solvation = -3175.974290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13743 -39.46805 -37.57451 -36.19617 -34.51355 -32.67814 -31.45181 -29.85945 -28.06467 -28.02280 -27.94029 -25.66583 -24.36131 -22.86640 -21.65973 -19.92013 -19.47118 -18.21957 -17.33007 -17.09064 -16.79658 -16.47271 -15.79773 -15.51030 -15.29938 -15.25434 -15.15596 -15.01073 -14.55302 -13.99569 -13.72403 -13.63740 -13.26958 -13.06928 -12.90598 -12.83089 -12.78902 -12.62364 -12.58861 -12.27341 -12.17089 -12.06252 -11.97500 -11.70908 -11.59235 -11.49462 -11.26092 -10.69851 -10.49112 -9.96974 -9.62463 -8.75975 -7.89287 -5.29952 1.20416 1.46175 1.48177 1.57635 1.74288 2.50678 2.52520 3.28189 3.62432 3.76678 3.85768 3.95778 3.97202 3.99536 4.32919 4.44717 4.52977 4.62727 4.67188 4.69807 4.71938 4.77133 4.83942 4.89100 4.89900 4.92109 5.02088 5.10358 5.12442 5.20820 5.21109 5.25472 5.38544 5.40387 5.47705 5.48440 5.57296 5.60811 5.73644 5.77448 6.17053 6.33207 6.66240 7.12736 7.37187 7.82826 8.36694 9.19406 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044961 B = 0.002953 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.611760 B = 9478.383295 C = 9550.811375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.053 4.053 3 C -0.137 4.137 4 C -0.151 4.151 5 C -0.129 4.129 6 C 0.507 3.493 7 O -0.569 6.569 8 N -0.718 5.718 9 C 0.169 3.831 10 C -0.138 4.138 11 C -0.144 4.144 12 C 0.205 3.795 13 N -0.616 5.616 14 C -0.257 4.257 15 H 0.070 0.930 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.967 3.033 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.271 1.271 22 C 0.138 3.862 23 C -0.084 4.084 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.111 0.889 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 15.981 -14.399 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.053 4.053 3 C -0.194 4.194 4 C -0.208 4.208 5 C -0.168 4.168 6 C 0.296 3.704 7 O -0.449 6.449 8 N -0.369 5.369 9 C 0.045 3.955 10 C -0.139 4.139 11 C -0.164 4.164 12 C 0.080 3.920 13 N -0.340 5.340 14 C -0.387 4.387 15 H 0.088 0.912 16 C -0.249 4.249 17 N -0.586 5.586 18 Si 0.795 3.205 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.196 1.196 22 C 0.013 3.987 23 C -0.122 4.122 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.903 15.646 -14.917 21.701 hybrid contribution -0.215 -1.033 1.077 1.508 sum 1.688 14.613 -13.840 20.198 Atomic orbital electron populations 1.22064 0.95189 1.02451 1.01213 1.20294 0.95552 0.95644 0.93815 1.21852 1.01467 0.93777 1.02354 1.22059 1.00464 1.01439 0.96862 1.21855 1.03594 0.90374 1.01000 1.21291 0.79557 0.88747 0.80837 1.90575 1.39451 1.78149 1.36742 1.46153 1.53664 1.11502 1.25628 1.20153 0.97897 0.81669 0.95783 1.20628 0.97450 1.01265 0.94524 1.22930 0.99006 0.98547 0.95947 1.19414 0.89180 0.92587 0.90828 1.44452 1.12922 1.15709 1.60917 1.19511 1.22407 0.89521 1.07244 0.91205 1.25729 1.01783 1.01401 0.96029 1.70166 1.37500 1.32731 1.18187 0.85258 0.76707 0.80551 0.77939 1.21191 1.21961 1.19631 1.21146 0.90680 0.96162 0.90705 1.20687 0.93613 0.99927 0.98003 0.92842 0.92908 0.92454 0.91654 0.92332 0.91839 0.92408 0.92957 0.92606 0.87208 0.86856 0.75309 0.91666 0.92444 0.87138 0.96758 0.92580 0.94119 0.92289 0.95332 0.92013 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.18 71.98 0.59 -2.37 16 2 C -0.05 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.14 -1.63 8.47 71.98 0.61 -1.02 16 4 C -0.15 -2.86 8.18 71.98 0.59 -2.27 16 5 C -0.13 -1.97 4.77 29.85 0.14 -1.82 16 6 C 0.51 11.54 7.24 87.66 0.63 12.17 16 7 O -0.57 -16.93 11.35 -3.01 -0.03 -16.97 16 8 N -0.72 -15.93 5.55 -466.80 -2.59 -18.52 16 9 C 0.17 4.58 5.66 85.63 0.48 5.07 16 10 C -0.14 -4.38 5.22 -15.14 -0.08 -4.46 16 11 C -0.14 -5.31 9.47 27.10 0.26 -5.05 16 12 C 0.20 9.80 5.25 85.40 0.45 10.25 16 13 N -0.62 -30.58 3.01 -703.12 -2.12 -32.70 16 14 C -0.26 -14.07 9.71 84.03 0.82 -13.25 16 15 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 16 C -0.05 -3.05 5.01 84.86 0.43 -2.62 16 17 N -0.94 -55.15 11.07 21.65 0.24 -54.91 16 18 Si 0.97 44.89 29.58 68.60 2.03 46.92 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.14 5.42 6.57 86.25 0.57 5.98 16 23 C -0.08 -2.64 5.95 29.65 0.18 -2.47 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.46 5.51 -2.38 -0.01 1.45 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 1.44 5.51 -2.38 -0.01 1.42 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 7.58 8.46 -92.71 -0.78 6.79 16 36 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 37 H 0.06 1.67 7.78 -2.39 -0.02 1.66 16 38 H 0.11 3.67 7.73 -2.91 -0.02 3.65 16 39 H 0.01 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.06 3.06 6.39 -2.39 -0.02 3.05 16 41 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 42 H 0.06 2.25 7.96 -2.39 -0.02 2.24 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -65.55 351.83 3.32 -62.24 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.17 Total: 16.69 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.62 Total: -2.76 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -4.47 Total: -106.12 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.03 Total: -16.97 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.55 3.32 -62.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677533253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.759 kcal (2) G-P(sol) polarization free energy of solvation -65.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds