Wall clock time and date at job start Fri Apr 10 2020 17:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32993 * 119.99539 * 2 1 4 4 C 1.50699 * 119.99468 * 179.97438 * 3 2 1 5 5 C 1.47102 * 120.00417 * 0.02562 * 3 2 1 6 6 O 1.21612 * 119.99726 * 333.80239 * 5 3 2 7 7 N 1.34771 * 120.00357 * 153.80959 * 5 3 2 8 8 C 1.46925 * 120.63432 * 174.75111 * 7 5 3 9 9 C 1.53194 * 108.77607 * 126.66330 * 8 7 5 10 10 C 1.53039 * 109.31284 * 54.63862 * 9 8 7 11 11 C 1.53038 * 109.53688 * 298.63334 * 10 9 8 12 12 H 1.08999 * 109.49871 * 301.41631 * 11 10 9 13 13 C 1.52999 * 109.52397 * 181.33502 * 11 10 9 14 14 N 1.46504 * 109.47259 * 175.14495 * 13 11 10 15 15 C 1.46504 * 120.00091 * 270.00017 * 14 13 11 16 16 C 1.36939 * 120.00076 * 89.99640 * 14 13 11 17 17 H 1.08002 * 119.99600 * 19.01467 * 16 14 13 18 18 C 1.38810 * 120.00268 * 199.01821 * 16 14 13 19 19 N 1.31619 * 119.99635 * 359.70019 * 18 16 14 20 20 Si 1.86796 * 120.00268 * 179.70390 * 18 16 14 21 21 H 1.48503 * 109.47316 * 89.99515 * 20 18 16 22 22 H 1.48499 * 109.47387 * 209.99729 * 20 18 16 23 23 H 1.48502 * 109.47137 * 329.99747 * 20 18 16 24 24 C 1.46929 * 120.62952 * 355.02788 * 7 5 3 25 25 H 1.08998 * 109.46798 * 59.99608 * 1 2 3 26 26 H 1.09001 * 109.46515 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47144 * 299.99391 * 1 2 3 28 28 H 1.07997 * 119.99908 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47532 * 276.92418 * 4 3 2 30 30 H 1.08999 * 109.47157 * 36.93100 * 4 3 2 31 31 H 1.09003 * 109.47260 * 156.93444 * 4 3 2 32 32 H 1.08999 * 109.58293 * 246.45337 * 8 7 5 33 33 H 1.09003 * 109.58349 * 6.87381 * 8 7 5 34 34 H 1.09005 * 109.49714 * 294.68406 * 9 8 7 35 35 H 1.08997 * 109.49500 * 174.58834 * 9 8 7 36 36 H 1.08999 * 109.45978 * 178.61678 * 10 9 8 37 37 H 1.09003 * 109.45143 * 58.64729 * 10 9 8 38 38 H 1.09007 * 109.47016 * 295.14148 * 13 11 10 39 39 H 1.08998 * 109.47042 * 55.14509 * 13 11 10 40 40 H 1.09003 * 109.46807 * 95.67920 * 15 14 13 41 41 H 1.08994 * 109.47019 * 215.68189 * 15 14 13 42 42 H 1.08994 * 109.46899 * 335.68290 * 15 14 13 43 43 H 0.97001 * 119.99700 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.58552 * 353.12327 * 24 7 5 45 45 H 1.09000 * 109.58533 * 113.54584 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.3138 2.4799 -0.4639 7 7 2.0066 3.5329 0.5157 8 6 1.3332 4.8353 0.4208 9 6 1.2382 5.4446 1.8231 10 6 2.6353 5.5035 2.4451 11 6 3.1993 4.0864 2.5714 12 1 2.5316 3.4825 3.1858 13 6 4.5821 4.1428 3.2237 14 7 5.0713 2.7805 3.4499 15 6 4.7747 2.0955 4.7105 16 6 5.8057 2.1473 2.4830 17 1 6.2843 2.7232 1.7047 18 6 5.9349 0.7654 2.5030 19 7 5.3564 0.0641 3.4549 20 14 6.9298 -0.0991 1.1793 21 1 8.3449 -0.2089 1.6161 22 1 6.3754 -1.4576 0.9511 23 1 6.8603 0.6822 -0.0817 24 6 3.3165 3.4616 1.1776 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 2.0471 -0.9353 -0.0004 29 1 4.0420 1.0281 1.0209 30 1 4.0425 0.3302 -0.6166 31 1 4.0425 2.0972 -0.4021 32 1 1.9076 5.4972 -0.2272 33 1 0.3316 4.6997 0.0126 34 1 0.5889 4.8279 2.4446 35 1 0.8276 6.4520 1.7549 36 1 2.5739 5.9593 3.4333 37 1 3.2905 6.0998 1.8101 38 1 5.2724 4.6723 2.5669 39 1 4.5131 4.6670 4.1769 40 1 3.8926 1.4677 4.5841 41 1 5.6244 1.4752 4.9956 42 1 4.5864 2.8340 5.4897 43 1 5.4471 -0.9015 3.4691 44 1 3.6235 2.4197 1.2689 45 1 4.0526 4.0116 0.5913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690187121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:37 Heat of formation + Delta-G solvation = 15.451606 kcal Electronic energy + Delta-G solvation = -24230.734975 eV Core-core repulsion = 21056.882370 eV Total energy + Delta-G solvation = -3173.852605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.08854 -37.60273 -35.56718 -34.69085 -32.95410 -31.81207 -30.35171 -29.25651 -26.22248 -25.80746 -25.48954 -23.79957 -22.71762 -21.54180 -20.23627 -19.51623 -17.99481 -16.73803 -16.14956 -15.13856 -15.05281 -14.78203 -14.57868 -14.02967 -13.90301 -13.62686 -13.29839 -13.06001 -12.98873 -12.69532 -12.40564 -12.26166 -12.14876 -11.79569 -11.66517 -11.42464 -11.17507 -11.06281 -10.95413 -10.73553 -10.68598 -10.47680 -10.26811 -10.12981 -9.94385 -9.88517 -9.60586 -9.10630 -8.65907 -8.44917 -8.08939 -6.85256 -5.76988 -3.21597 1.86776 3.29338 3.36995 3.39126 3.41412 3.65390 4.39893 4.91055 5.07408 5.17427 5.28855 5.33021 5.35858 5.49140 5.56234 5.59784 5.74226 5.79835 5.91218 5.93137 6.06580 6.07012 6.12234 6.19639 6.24024 6.27006 6.31877 6.34175 6.41230 6.53227 6.56263 6.73352 6.79594 6.83458 6.90380 6.96597 7.02629 7.15898 7.51668 7.67553 7.85177 7.88031 8.33850 8.59827 9.18981 9.81770 10.30487 11.24484 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.008707 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.467702 B = 3215.037938 C = 4537.455361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 C -0.174 4.174 4 C -0.136 4.136 5 C 0.558 3.442 6 O -0.558 6.558 7 N -0.605 5.605 8 C 0.111 3.889 9 C -0.131 4.131 10 C -0.115 4.115 11 C -0.121 4.121 12 H 0.065 0.935 13 C 0.159 3.841 14 N -0.607 5.607 15 C 0.166 3.834 16 C -0.246 4.246 17 H 0.070 0.930 18 C 0.004 3.996 19 N -0.907 5.907 20 Si 0.885 3.115 21 H -0.289 1.289 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.084 3.916 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.020 0.980 41 H 0.062 0.938 42 H -0.012 1.012 43 H 0.252 0.748 44 H 0.146 0.854 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 6.127 -3.681 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.112 4.112 3 C -0.177 4.177 4 C -0.191 4.191 5 C 0.349 3.651 6 O -0.439 6.439 7 N -0.336 5.336 8 C -0.012 4.012 9 C -0.169 4.169 10 C -0.154 4.154 11 C -0.143 4.143 12 H 0.084 0.916 13 C 0.031 3.969 14 N -0.330 5.330 15 C 0.021 3.979 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.553 5.553 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.036 4.036 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.007 0.993 43 H 0.063 0.937 44 H 0.163 0.837 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.073 5.978 -3.881 9.363 hybrid contribution 0.637 -0.498 -0.616 1.017 sum -5.436 5.480 -4.497 8.933 Atomic orbital electron populations 1.20959 0.92451 1.00885 1.03580 1.23400 0.96535 0.96851 0.94431 1.21501 0.96973 0.92747 1.06445 1.21497 0.90133 1.01976 1.05515 1.18554 0.85265 0.84063 0.77194 1.90673 1.19086 1.85768 1.48355 1.48192 1.21653 1.07153 1.56633 1.21513 0.98621 0.84189 0.96898 1.21877 0.98193 1.00327 0.96506 1.21588 0.95525 0.97986 1.00261 1.22240 1.00595 0.94489 0.96961 0.91610 1.20825 0.91393 0.87720 0.97003 1.44001 1.60912 1.12261 1.15828 1.20929 1.00677 0.92545 0.83732 1.19231 1.23524 0.89191 1.05664 0.91196 1.24946 0.99728 0.96426 0.98236 1.70115 1.46738 1.05761 1.32689 0.86590 0.80074 0.79721 0.82202 1.21579 1.21325 1.19954 1.22958 0.81615 1.07460 0.91596 0.89669 0.93074 0.91717 0.86092 0.85927 0.92663 0.91547 0.92129 0.89661 0.91883 0.91527 0.92250 0.92287 0.93757 0.94128 0.96192 0.91945 0.99345 0.93672 0.83671 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.54 36.01 0.31 -1.60 16 2 C -0.09 -1.57 9.97 -36.12 -0.36 -1.93 16 3 C -0.17 -3.23 5.63 -102.85 -0.58 -3.81 16 4 C -0.14 -2.56 7.42 36.01 0.27 -2.29 16 5 C 0.56 10.67 7.23 -12.67 -0.09 10.58 16 6 O -0.56 -11.31 13.26 5.27 0.07 -11.24 16 7 N -0.60 -10.61 2.97 -174.16 -0.52 -11.12 16 8 C 0.11 1.64 6.44 -3.71 -0.02 1.62 16 9 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 10 C -0.12 -1.61 5.17 -26.69 -0.14 -1.75 16 11 C -0.12 -2.09 2.54 -90.50 -0.23 -2.32 16 12 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 13 C 0.16 2.98 5.22 -4.04 -0.02 2.95 16 14 N -0.61 -13.82 2.82 -181.11 -0.51 -14.33 16 15 C 0.17 3.88 9.00 59.85 0.54 4.42 16 16 C -0.25 -5.95 7.25 -15.06 -0.11 -6.06 16 17 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.00 0.10 3.88 -17.43 -0.07 0.04 16 19 N -0.91 -24.02 9.91 55.49 0.55 -23.47 16 20 Si 0.88 20.02 28.58 -169.99 -4.86 15.17 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C 0.08 1.52 3.39 -3.71 -0.01 1.51 16 25 H 0.08 1.40 6.73 -51.93 -0.35 1.05 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 28 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.12 2.67 3.77 -51.93 -0.20 2.48 16 30 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.07 1.21 6.33 -51.93 -0.33 0.88 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.81 8.03 -51.92 -0.42 0.39 16 39 H 0.04 0.71 7.86 -51.93 -0.41 0.31 16 40 H 0.02 0.50 7.58 -51.93 -0.39 0.11 16 41 H 0.06 1.60 6.67 -51.93 -0.35 1.25 16 42 H -0.01 -0.25 7.83 -51.93 -0.41 -0.66 16 43 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 44 H 0.15 2.96 1.90 -52.67 -0.10 2.86 16 45 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -26.80 335.59 -8.38 -35.18 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.49 Total: 5.31 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.68 Total: -0.54 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.48 Total: -48.93 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.86 Total: 15.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.80 -8.38 -35.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690187121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.630 kcal (2) G-P(sol) polarization free energy of solvation -26.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds