Wall clock time and date at job start Fri Apr 10 2020 17:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32993 * 119.99539 * 2 1 4 4 C 1.50699 * 119.99468 * 179.97438 * 3 2 1 5 5 C 1.47102 * 120.00417 * 0.02562 * 3 2 1 6 6 O 1.21612 * 119.99726 * 333.80239 * 5 3 2 7 7 N 1.34771 * 120.00357 * 153.80959 * 5 3 2 8 8 C 1.46925 * 120.63432 * 174.75111 * 7 5 3 9 9 C 1.53194 * 108.77607 * 126.66330 * 8 7 5 10 10 C 1.53039 * 109.31284 * 54.63862 * 9 8 7 11 11 C 1.53038 * 109.53688 * 298.63334 * 10 9 8 12 12 H 1.08999 * 109.49871 * 301.41631 * 11 10 9 13 13 C 1.52999 * 109.52397 * 181.33502 * 11 10 9 14 14 N 1.46504 * 109.47259 * 175.14495 * 13 11 10 15 15 C 1.46504 * 120.00091 * 270.00017 * 14 13 11 16 16 C 1.36939 * 120.00076 * 89.99640 * 14 13 11 17 17 H 1.08002 * 119.99600 * 19.01467 * 16 14 13 18 18 C 1.38810 * 120.00268 * 199.01821 * 16 14 13 19 19 N 1.31619 * 119.99635 * 359.70019 * 18 16 14 20 20 Si 1.86796 * 120.00268 * 179.70390 * 18 16 14 21 21 H 1.48503 * 109.47316 * 89.99515 * 20 18 16 22 22 H 1.48499 * 109.47387 * 209.99729 * 20 18 16 23 23 H 1.48502 * 109.47137 * 329.99747 * 20 18 16 24 24 C 1.46929 * 120.62952 * 355.02788 * 7 5 3 25 25 H 1.08998 * 109.46798 * 59.99608 * 1 2 3 26 26 H 1.09001 * 109.46515 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47144 * 299.99391 * 1 2 3 28 28 H 1.07997 * 119.99908 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47532 * 276.92418 * 4 3 2 30 30 H 1.08999 * 109.47157 * 36.93100 * 4 3 2 31 31 H 1.09003 * 109.47260 * 156.93444 * 4 3 2 32 32 H 1.08999 * 109.58293 * 246.45337 * 8 7 5 33 33 H 1.09003 * 109.58349 * 6.87381 * 8 7 5 34 34 H 1.09005 * 109.49714 * 294.68406 * 9 8 7 35 35 H 1.08997 * 109.49500 * 174.58834 * 9 8 7 36 36 H 1.08999 * 109.45978 * 178.61678 * 10 9 8 37 37 H 1.09003 * 109.45143 * 58.64729 * 10 9 8 38 38 H 1.09007 * 109.47016 * 295.14148 * 13 11 10 39 39 H 1.08998 * 109.47042 * 55.14509 * 13 11 10 40 40 H 1.09003 * 109.46807 * 95.67920 * 15 14 13 41 41 H 1.08994 * 109.47019 * 215.68189 * 15 14 13 42 42 H 1.08994 * 109.46899 * 335.68290 * 15 14 13 43 43 H 0.97001 * 119.99700 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.58552 * 353.12327 * 24 7 5 45 45 H 1.09000 * 109.58533 * 113.54584 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.3138 2.4799 -0.4639 7 7 2.0066 3.5329 0.5157 8 6 1.3332 4.8353 0.4208 9 6 1.2382 5.4446 1.8231 10 6 2.6353 5.5035 2.4451 11 6 3.1993 4.0864 2.5714 12 1 2.5316 3.4825 3.1858 13 6 4.5821 4.1428 3.2237 14 7 5.0713 2.7805 3.4499 15 6 4.7747 2.0955 4.7105 16 6 5.8057 2.1473 2.4830 17 1 6.2843 2.7232 1.7047 18 6 5.9349 0.7654 2.5030 19 7 5.3564 0.0641 3.4549 20 14 6.9298 -0.0991 1.1793 21 1 8.3449 -0.2089 1.6161 22 1 6.3754 -1.4576 0.9511 23 1 6.8603 0.6822 -0.0817 24 6 3.3165 3.4616 1.1776 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 2.0471 -0.9353 -0.0004 29 1 4.0420 1.0281 1.0209 30 1 4.0425 0.3302 -0.6166 31 1 4.0425 2.0972 -0.4021 32 1 1.9076 5.4972 -0.2272 33 1 0.3316 4.6997 0.0126 34 1 0.5889 4.8279 2.4446 35 1 0.8276 6.4520 1.7549 36 1 2.5739 5.9593 3.4333 37 1 3.2905 6.0998 1.8101 38 1 5.2724 4.6723 2.5669 39 1 4.5131 4.6670 4.1769 40 1 3.8926 1.4677 4.5841 41 1 5.6244 1.4752 4.9956 42 1 4.5864 2.8340 5.4897 43 1 5.4471 -0.9015 3.4691 44 1 3.6235 2.4197 1.2689 45 1 4.0526 4.0116 0.5913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690187121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:36 Heat of formation + Delta-G solvation = 1.981356 kcal Electronic energy + Delta-G solvation = -24231.319089 eV Core-core repulsion = 21056.882370 eV Total energy + Delta-G solvation = -3174.436719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48681 -39.03525 -37.19075 -36.15294 -34.39817 -33.31158 -31.93547 -30.65464 -27.98951 -27.37705 -26.96150 -25.16739 -24.16087 -23.05651 -21.68041 -20.87865 -19.41774 -18.55741 -17.56971 -16.80994 -16.52160 -16.29955 -15.88186 -15.49152 -15.31513 -15.08697 -14.88269 -14.62864 -14.33472 -14.10755 -13.86439 -13.69669 -13.62100 -13.27976 -13.04673 -12.95537 -12.74796 -12.59921 -12.49432 -12.32868 -12.12898 -12.00000 -11.92777 -11.74072 -11.47725 -11.44734 -11.03696 -10.58189 -10.45065 -9.93438 -9.46190 -8.70550 -7.68963 -5.13230 0.45916 1.47739 1.53270 1.57450 2.02423 2.25502 2.55738 3.41756 3.57580 3.73615 3.93147 4.01900 4.04526 4.15136 4.17492 4.31418 4.41747 4.45027 4.64011 4.67782 4.74429 4.76482 4.85133 4.88069 4.90685 4.94235 4.96453 5.04272 5.07488 5.09776 5.17219 5.28078 5.29440 5.45992 5.52613 5.56846 5.57700 5.61176 5.74142 5.76849 5.91078 6.43525 6.45477 7.16655 7.27657 7.99206 8.43556 9.32462 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.008707 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.467702 B = 3215.037938 C = 4537.455361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.199 4.199 4 C -0.123 4.123 5 C 0.551 3.449 6 O -0.577 6.577 7 N -0.604 5.604 8 C 0.105 3.895 9 C -0.123 4.123 10 C -0.108 4.108 11 C -0.111 4.111 12 H 0.036 0.964 13 C 0.157 3.843 14 N -0.619 5.619 15 C 0.181 3.819 16 C -0.236 4.236 17 H 0.076 0.924 18 C -0.034 4.034 19 N -0.936 5.936 20 Si 0.926 3.074 21 H -0.298 1.298 22 H -0.296 1.296 23 H -0.257 1.257 24 C 0.086 3.914 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.136 0.864 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.056 0.944 40 H -0.008 1.008 41 H 0.035 0.965 42 H 0.013 0.987 43 H 0.243 0.757 44 H 0.124 0.876 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 7.972 -4.438 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.179 4.179 5 C 0.342 3.658 6 O -0.460 6.460 7 N -0.335 5.335 8 C -0.017 4.017 9 C -0.161 4.161 10 C -0.146 4.146 11 C -0.133 4.133 12 H 0.054 0.946 13 C 0.031 3.969 14 N -0.342 5.342 15 C 0.036 3.964 16 C -0.366 4.366 17 H 0.094 0.906 18 C -0.228 4.228 19 N -0.584 5.584 20 Si 0.755 3.245 21 H -0.226 1.226 22 H -0.222 1.222 23 H -0.181 1.181 24 C -0.035 4.035 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.011 0.989 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.141 0.859 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.253 7.880 -4.650 11.082 hybrid contribution 0.671 -1.024 -0.363 1.277 sum -5.581 6.856 -5.013 10.163 Atomic orbital electron populations 1.20916 0.91485 1.02435 1.02443 1.23746 0.97411 0.97042 0.92211 1.21589 0.96923 0.93311 1.08373 1.21303 0.90428 1.02293 1.03843 1.18701 0.85195 0.84659 0.77257 1.90653 1.19748 1.86112 1.49447 1.48256 1.21480 1.07888 1.55874 1.21747 0.98321 0.83219 0.98392 1.21842 0.97664 1.01711 0.94922 1.21540 0.95865 0.95497 1.01708 1.22043 0.99172 0.96436 0.95681 0.94582 1.20991 0.92112 0.85608 0.98236 1.44193 1.61138 1.13577 1.15325 1.20604 0.98238 0.92574 0.84951 1.19427 1.22592 0.89218 1.05323 0.90624 1.25365 1.00903 0.97069 0.99478 1.70272 1.48629 1.05184 1.34325 0.85922 0.78311 0.78780 0.81474 1.22556 1.22217 1.18132 1.22816 0.82036 1.06412 0.92224 0.90431 0.90184 0.93061 0.84642 0.88683 0.92009 0.91378 0.90044 0.90428 0.93543 0.88137 0.90676 0.90552 0.92624 0.92566 0.98947 0.94654 0.96826 0.94664 0.85866 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 8.54 71.24 0.61 -2.93 16 2 C -0.08 -2.82 9.97 24.52 0.24 -2.57 16 3 C -0.20 -7.36 5.63 -18.70 -0.11 -7.47 16 4 C -0.12 -4.60 7.42 71.24 0.53 -4.08 16 5 C 0.55 20.89 7.23 86.57 0.63 21.51 16 6 O -0.58 -23.27 13.26 -4.07 -0.05 -23.33 16 7 N -0.60 -20.54 2.97 -823.16 -2.45 -22.99 16 8 C 0.10 2.88 6.44 86.36 0.56 3.43 16 9 C -0.12 -2.91 6.08 30.67 0.19 -2.72 16 10 C -0.11 -2.64 5.17 30.62 0.16 -2.48 16 11 C -0.11 -3.68 2.54 -10.72 -0.03 -3.71 16 12 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 13 C 0.16 5.56 5.22 86.38 0.45 6.01 16 14 N -0.62 -27.80 2.82 -726.92 -2.05 -29.86 16 15 C 0.18 8.57 9.00 127.77 1.15 9.72 16 16 C -0.24 -11.27 7.25 84.03 0.61 -10.66 16 17 H 0.08 3.50 7.81 -2.91 -0.02 3.47 16 18 C -0.03 -1.69 3.88 84.86 0.33 -1.36 16 19 N -0.94 -50.88 9.91 21.65 0.21 -50.66 16 20 Si 0.93 41.13 28.58 68.60 1.96 43.09 16 21 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 C 0.09 3.01 3.39 86.36 0.29 3.30 16 25 H 0.08 2.51 6.73 -2.39 -0.02 2.49 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 1.70 7.93 -2.39 -0.02 1.68 16 28 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.10 4.18 3.77 -2.39 -0.01 4.17 16 30 H 0.06 2.14 8.12 -2.39 -0.02 2.13 16 31 H 0.07 2.44 6.33 -2.39 -0.02 2.42 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.86 8.03 -2.38 -0.02 1.84 16 39 H 0.06 1.82 7.86 -2.39 -0.02 1.80 16 40 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 41 H 0.03 1.84 6.67 -2.39 -0.02 1.82 16 42 H 0.01 0.55 7.83 -2.39 -0.02 0.53 16 43 H 0.24 13.21 8.31 -92.71 -0.77 12.44 16 44 H 0.12 5.00 1.90 -3.08 -0.01 4.99 16 45 H 0.06 2.09 8.04 -2.39 -0.02 2.07 16 Total: -1.00 -58.25 335.59 4.19 -54.06 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.96 Total: 23.68 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.61 Total: 6.00 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -4.28 Total: -103.51 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.33 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.96 Total: 43.09 kcal Total: -58.25 4.19 -54.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690187121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.046 kcal (2) G-P(sol) polarization free energy of solvation -58.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds